Rmu_sc0005310.1_g000040

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005310.1
OG0014449
Physical Location & Seq
Reverse (-)
208689 .. 208997
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005310.1_g000040.1.cds

Sequence Viewer

Length: 309 bp
atgaggctttgtgaaggggcactgccaaagttttaccaaggtcaccagaacaaaacagtactcaatgtggtcttgacgggccaaaaccaatacggaaacacattgatgaatgcactacaacagcaacaacaaactggaagcatccccttggatcttaaggttgatgcaccggtagcaattcaagtggggacactgaagctcaggaaggtcaggatactggggcagtgtttgttggttgtggatagcctcaccgctaataatttcattagcataaaagctaataattgtagatttagattgaagccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

102

Amino Acids

11.32

Weight (kDa)

9.95

Isoelectric Point (pI)

17.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 60
AflII CTTAAG 1 cut(s) 155
AgeI ACCGGT 1 cut(s) 169
AgsI TTSAA 2 cut(s) 182, 301
AluBI AGCT 2 cut(s) 199, 278
AluI AGCT 2 cut(s) 199, 278
AlwI GGATC 1 cut(s) 159
AoxI GGCC 1 cut(s) 79
AsiGI ACCGGT 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 35, 241
BaeGI GKGCMC 1 cut(s) 22
BciVI GTATCC 1 cut(s) 207
BfrI CTTAAG 1 cut(s) 155
BfuI GTATCC 1 cut(s) 207
BmcAI AGTACT 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 150, 154
BmuI ACTGGG 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 37, 147
BsaWI WCCGGW 1 cut(s) 169
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 139, 222
BseDI CCNNGG 2 cut(s) 37, 147
BseGI GGATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 2 cut(s) 139, 222
BseSI GKGCMC 1 cut(s) 22
BshFI GGCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 169
BsiSI CCGG 1 cut(s) 170
BslFI GGGAC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 202
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 151
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 213
BspPI GGATC 1 cut(s) 159
BspTI CTTAAG 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 2 cut(s) 139, 222
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 37, 147
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 37, 147
Bst4CI ACNGT 1 cut(s) 58
BstAFI CTTAAG 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 200
BstEII GGTNACC 1 cut(s) 41
BstF5I GGATG 1 cut(s) 141
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstPI GGTNACC 1 cut(s) 41
BstSLI GKGCMC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 141
BtsI GCAGTG 2 cut(s) 20, 230
BtsIMutI CAGTG 3 cut(s) 20, 191, 230
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 59
CspAI ACCGGT 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviJI RGCY 6 cut(s) 7, 81, 199, 246, 278, 304
CviKI_1 RGCY 6 cut(s) 7, 81, 199, 246, 278, 304
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 37, 147
Eco57I CTGAAG 1 cut(s) 215
Eco91I GGTNACC 1 cut(s) 41
EcoO65I GGTNACC 1 cut(s) 41
EcoT14I CCWWGG 2 cut(s) 37, 147
ErhI CCWWGG 2 cut(s) 37, 147
FaiI YATR 1 cut(s) 272
FaqI GGGAC 1 cut(s) 202
FokI GGATG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 81
HapII CCGG 1 cut(s) 170
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 35, 241
Hpy188III TCNNGA 3 cut(s) 73, 202, 211
HpyAV CCTTC 2 cut(s) 8, 199
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 113, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 6 cut(s) 59, 120, 183, 187, 196, 203
LweI GCATC 2 cut(s) 150, 154
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 3 cut(s) 177, 259, 283
MnlI CCTC 1 cut(s) 257
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 104
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 41
PctI GAATGC 1 cut(s) 115
PinAI ACCGGT 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 151
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 156
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 60
SduI GDGCHC 1 cut(s) 22
SetI ASST 5 cut(s) 43, 162, 201, 210, 280
SfaNI GCATC 2 cut(s) 150, 154
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 3 cut(s) 177, 259, 283
SsiI CCGC 1 cut(s) 252
StyI CCWWGG 2 cut(s) 37, 147
TaaI ACNGT 1 cut(s) 58
TasI AATT 3 cut(s) 177, 259, 283
TatI WGTACW 1 cut(s) 58
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 3 cut(s) 27, 198, 230
TseFI GTSAC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 122, 253
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 3 cut(s) 27, 198, 230
Vha464I CTTAAG 1 cut(s) 155
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.