Rh7DG002000

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014449
Physical Location & Seq
Forward (+)
220159 .. 220923
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG002000.1

Sequence Viewer

Length: 765 bp
ATGGTGCCTCATGGACACCAGAATTCTTCAACAATTACACAAAAAGAGATGAAAGAGAGAGGTATAGGTACTAGTCCAGTTGATCAACAGCATCGCCCTCCATTAGGTTTAAGACCATCACAAGTTGCGCGTGCCATTCCGGTAATCCCTGCAGAGCCGGAGCAACCAGAAAAGAGGAGCTCATCATCTACTTATTGCAGATGTATGTGTTGGGCACTGAGCATCCTTCTCCTTGTATCGATCACAATAGGAGCCACCGGTGGAATACTTTATATTATCTTCCGCCCGAAACTTCCAAGCTACTCTGTTAATAGCTTGAGGATAAGCGATTTAAGGCTCAAATTGGACATGAGCCTATATGCCGAATTCGATGTTAAGATAACAGCTAACAACCCAAACAAGAAGATTGGGATTTATTATGAGCAAGGTGGCCGGTTGAGCGTGTGGTATATAAACATGAGGCTTTGTGAAGGGGCACTGCCAAAGTTTTACCAAGGTCACCAGAACAAAACAGTACTCAATGTGGTCTTGACGGGCCAAAACCAATACGGAAACACATTGATGAATGCACTGCAACAGCAACAACAAACTGGAAGCATCCCCTTGGATCTTAAGGTTGATGCACCGGTAGCAATTCAAGTGGGGACACTGAAGCTCAGGAAGGTCAGGATATTGGGGCAGTGTTTGTTGGTTGTGGATAGCCTCACCGCTAATAATTTCATTAGCATAAAAGCTAATAATTGTAGATTTAGATTGAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

254

Amino Acids

28.32

Weight (kDa)

9.76

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 127 - 222 4.4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 130
AciI CCGC 2 cut(s) 283, 708
AclWI GGATC 1 cut(s) 615
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 2 cut(s) 22, 365
AcuI CTGAAG 1 cut(s) 671
AfaI GTAC 2 cut(s) 70, 516
AfiI CCNNNNNNNGG 1 cut(s) 104
AflII CTTAAG 1 cut(s) 611
AgeI ACCGGT 2 cut(s) 257, 625
AgsI TTSAA 3 cut(s) 30, 638, 757
AhlI ACTAGT 1 cut(s) 71
AluBI AGCT 6 cut(s) 180, 300, 315, 386, 655, 734
AluI AGCT 6 cut(s) 180, 300, 315, 386, 655, 734
Alw21I GWGCWC 1 cut(s) 182
AlwI GGATC 1 cut(s) 615
AoxI GGCC 2 cut(s) 430, 535
ApoI RAATTY 2 cut(s) 22, 365
AsiGI ACCGGT 2 cut(s) 257, 625
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 535
AsuHPI GGTGA 2 cut(s) 491, 697
BaeGI GKGCMC 2 cut(s) 217, 478
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 182
BccI CCATC 1 cut(s) 124
BclI TGATCA 1 cut(s) 82
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 150
BfrI CTTAAG 1 cut(s) 611
BmcAI AGTACT 1 cut(s) 516
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 2 cut(s) 6, 253
BmsI GCATC 4 cut(s) 100, 231, 606, 610
Bpu10I CCTNAGC 1 cut(s) 656
BpuEI CTTGAG 1 cut(s) 337
Bsa29I ATCGAT 1 cut(s) 239
BsaJI CCNNGG 2 cut(s) 493, 603
BsaWI WCCGGW 3 cut(s) 139, 257, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 3 cut(s) 257, 432, 625
Bse1I ACTGG 2 cut(s) 77, 595
BseCI ATCGAT 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 493, 603
BseGI GGATG 2 cut(s) 222, 597
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 2 cut(s) 209, 670
BseNI ACTGG 2 cut(s) 77, 595
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 2 cut(s) 217, 478
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 432, 537
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 2 cut(s) 257, 625
BshVI ATCGAT 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 5 cut(s) 140, 158, 258, 433, 626
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 658
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 432, 537
Bsp1286I GDGCHC 3 cut(s) 182, 217, 478
Bsp143I GATC 3 cut(s) 82, 240, 607
BspACI CCGC 2 cut(s) 283, 708
BspANI GGCC 2 cut(s) 432, 537
BspCNI CTCAG 2 cut(s) 210, 669
BspDI ATCGAT 1 cut(s) 239
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 6, 253
BspMAI CTGCAG 1 cut(s) 154
BspPI GGATC 1 cut(s) 615
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 611
BsrFI RCCGGY 3 cut(s) 257, 432, 625
BsrI ACTGG 2 cut(s) 77, 595
BssAI RCCGGY 3 cut(s) 257, 432, 625
BssECI CCNNGG 2 cut(s) 493, 603
BssMI GATC 3 cut(s) 82, 240, 607
BssT1I CCWWGG 2 cut(s) 493, 603
Bst4CI ACNGT 1 cut(s) 514
BstAFI CTTAAG 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 218, 656
BstEII GGTNACC 1 cut(s) 497
BstENI CCTNNNNNAGG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 222, 597
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 3 cut(s) 85, 243, 610
BstMBI GATC 3 cut(s) 82, 240, 607
BstMWI GCNNNNNNNGC 2 cut(s) 438, 629
BstPI GGTNACC 1 cut(s) 497
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 2 cut(s) 217, 478
BstUI CGCG 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
Bsu15I ATCGAT 1 cut(s) 239
BsuRI GGCC 2 cut(s) 432, 537
BsuTUI ATCGAT 1 cut(s) 239
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 222, 597
BtsI GCAGTG 3 cut(s) 476, 569, 686
BtsIMutI CAGTG 5 cut(s) 215, 476, 569, 647, 686
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 3 cut(s) 257, 432, 625
Cfr13I GGNCC 1 cut(s) 535
ClaI ATCGAT 1 cut(s) 239
Csp6I GTAC 2 cut(s) 69, 515
CspAI ACCGGT 2 cut(s) 257, 625
CspCI CAANNNNNGTGG 2 cut(s) 621, 656
CviAII CATG 3 cut(s) 11, 349, 457
CviQI GTAC 2 cut(s) 69, 515
DdeI CTNAG 2 cut(s) 218, 656
DpnI GATC 3 cut(s) 84, 242, 609
DpnII GATC 3 cut(s) 82, 240, 607
EaeI YGGCCR 1 cut(s) 430
EciI GGCGGA 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 180
Eco130I CCWWGG 2 cut(s) 493, 603
Eco24I GRGCYC 1 cut(s) 182
Eco53kI GAGCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 671
Eco91I GGTNACC 1 cut(s) 497
EcoICRI GAGCTC 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 102
EcoO65I GGTNACC 1 cut(s) 497
EcoRI GAATTC 2 cut(s) 22, 365
EcoT14I CCWWGG 2 cut(s) 493, 603
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 2 cut(s) 493, 603
FaeI CATG 3 cut(s) 14, 352, 460
FaqI GGGAC 1 cut(s) 658
FatI CATG 3 cut(s) 10, 348, 456
FbaI TGATCA 1 cut(s) 82
FokI GGATG 2 cut(s) 209, 584
FriOI GRGCYC 1 cut(s) 182
FspBI CTAG 1 cut(s) 72
GlaI GCGC 1 cut(s) 129
HaeIII GGCC 2 cut(s) 432, 537
HapII CCGG 5 cut(s) 140, 158, 258, 433, 626
HhaI GCGC 1 cut(s) 130
Hin1II CATG 3 cut(s) 14, 352, 460
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HpaII CCGG 5 cut(s) 140, 158, 258, 433, 626
HphI GGTGA 2 cut(s) 491, 697
Hpy188III TCNNGA 3 cut(s) 529, 658, 667
HpyAV CCTTC 3 cut(s) 236, 464, 655
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4V TGCA 5 cut(s) 152, 198, 569, 574, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 438, 629
HpyF3I CTNAG 2 cut(s) 218, 656
Hsp92II CATG 3 cut(s) 14, 352, 460
HspAI GCGC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 3 cut(s) 82, 240, 607
LmnI GCTCC 3 cut(s) 160, 177, 251
LweI GCATC 4 cut(s) 100, 231, 606, 610
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 497
MalI GATC 3 cut(s) 84, 242, 609
MboI GATC 3 cut(s) 82, 240, 607
MboII GAAGA 3 cut(s) 18, 271, 415
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 3 cut(s) 182, 217, 478
MluCI AATT 7 cut(s) 22, 33, 341, 365, 633, 715, 739
MnlI CCTC 7 cut(s) 18, 53, 108, 168, 312, 453, 713
MseI TTAA 5 cut(s) 110, 309, 332, 375, 612
MslI CAYNNNNRTG 1 cut(s) 560
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 5 cut(s) 140, 158, 258, 433, 626
Mva1269I GAATGC 1 cut(s) 571
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 438, 629
NdeII GATC 3 cut(s) 82, 240, 607
NlaIII CATG 3 cut(s) 14, 352, 460
NlaIV GGNNCC 2 cut(s) 6, 253
NmuCI GTSAC 1 cut(s) 497
PctI GAATGC 1 cut(s) 571
PinAI ACCGGT 2 cut(s) 257, 625
Psp124BI GAGCTC 1 cut(s) 182
PspEI GGTNACC 1 cut(s) 497
PspN4I GGNNCC 2 cut(s) 6, 253
PspPI GGNCC 1 cut(s) 535
PstI CTGCAG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 607
RsaI GTAC 2 cut(s) 70, 516
RsaNI GTAC 2 cut(s) 69, 515
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 182
SaqAI TTAA 5 cut(s) 110, 309, 332, 375, 612
Sau3AI GATC 3 cut(s) 82, 240, 607
Sau96I GGNCC 1 cut(s) 535
ScaI AGTACT 1 cut(s) 516
SduI GDGCHC 3 cut(s) 182, 217, 478
SfaNI GCATC 4 cut(s) 100, 231, 606, 610
SfcI CTRYAG 1 cut(s) 150
SgrAI CRCCGGYG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 2 cut(s) 316, 611
SmoI CTYRAG 2 cut(s) 316, 611
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 7 cut(s) 22, 33, 341, 365, 633, 715, 739
SsiI CCGC 2 cut(s) 283, 708
SspMI CTAG 1 cut(s) 72
SstI GAGCTC 1 cut(s) 182
StyI CCWWGG 2 cut(s) 493, 603
TaaI ACNGT 1 cut(s) 514
TaqI TCGA 2 cut(s) 239, 369
TasI AATT 7 cut(s) 22, 33, 341, 365, 633, 715, 739
TatI WGTACW 1 cut(s) 514
Tru1I TTAA 5 cut(s) 110, 309, 332, 375, 612
Tru9I TTAA 5 cut(s) 110, 309, 332, 375, 612
TscAI CASTG 5 cut(s) 222, 483, 576, 654, 686
TseFI GTSAC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 3 cut(s) 65, 578, 709
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 5 cut(s) 222, 483, 576, 654, 686
Vha464I CTTAAG 1 cut(s) 611
XagI CCTNNNNNAGG 1 cut(s) 102
XapI RAATTY 2 cut(s) 22, 365
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.