Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Forward (+)

20454389 .. 20456220

Gene Structure 1832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGGTCTTCAAGTGGTCTAAATGGGATGAGGGAAAACAACAGTTTTCCGGATAACACAAGGAACCCACAAATTCTTGAAGTGACTCCATTGAACAGTATGCCTTACATTGGTCCAGTAACTCATGCATCCATGTCGAGTAACAGGATGAATGATAGTGTAGAGAAAGTAGGAGGGCCTGCGATGATATTTCTGCCTTCTGACTCAAGTTCAGAGTTTTCTAACCTTATCAGTCAAACGAAAACCGGAGTTGCTCTCACGGGAAGTGCTGCAATGGGGAAGATTGGACTAACGATTGGGTTGGTTGATATTGCTGAATCCGAAGACTCATATTACTTTCGTGTTGCATTGCCTGGTGTTTCAAGGGATGAGAAGGAATTCAGCTGCGAAATAGAACCAGACGGTAAGATTATGATAAAGGGAGCAACAACGACGGGGGAGCAGACAGTTTGCAAACACAATCAGATCTTCAAAATGCTAACACAGAACTTATGCCCACCAGGCCACTTCACCATCAACTTTCAGCTTCCTGGTCCTGTGAGCAATGAAGAATTTAACGGTAATTTTGGGTCAGATGGTGTACTTGAAGGCGTAGTGAAGAAGGTGTACTACGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

206

Amino Acids

22.3

Weight (kDa)

4.91

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	49
AcsI	RAATTY	3 cut(s)	72, 377, 551
AfaI	GTAC	2 cut(s)	582, 608
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	6 cut(s)	12, 80, 94, 363, 472, 587
AjnI	CCWGG	3 cut(s)	352, 499, 529
AluBI	AGCT	2 cut(s)	384, 526
AluI	AGCT	2 cut(s)	384, 526
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	2 cut(s)	176, 502
ApeKI	GCWGC	2 cut(s)	269, 384
ApoI	RAATTY	3 cut(s)	72, 377, 551
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	113, 176, 533
AsuHPI	GGTGA	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	113, 533
BarI	GAAGNNNNNNTAC	2 cut(s)	590, 593
BbsI	GAAGAC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	256, 371
BccI	CCATC	2 cut(s)	521, 569
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciT130I	CCWGG	3 cut(s)	354, 501, 531
BglI	GCCNNNNNGGC	1 cut(s)	501
BglII	AGATCT	1 cut(s)	465
BisI	GCNGC	2 cut(s)	270, 385
BlsI	GCNGC	2 cut(s)	271, 386
Bme1390I	CCNGG	3 cut(s)	354, 501, 531
Bme18I	GGWCC	2 cut(s)	113, 533
BmgT120I	GGNCC	3 cut(s)	113, 176, 533
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	3 cut(s)	354, 501, 531
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	240, 272
BpuEI	CTTGAG	1 cut(s)	190
BsaWI	WCCGGW	2 cut(s)	49, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	116
Bse3DI	GCAATG	3 cut(s)	279, 347, 550
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	3 cut(s)	354, 501, 531
BseGI	GGATG	4 cut(s)	33, 128, 153, 373
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	3 cut(s)	279, 347, 550
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	256, 371
BshFI	GGCC	2 cut(s)	178, 504
BsiSI	CCGG	2 cut(s)	50, 246
BslI	CCNNNNNNNGG	1 cut(s)	110
BsnI	GGCC	2 cut(s)	178, 504
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	465
BspANI	GGCC	2 cut(s)	178, 504
BspEI	TCCGGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	65
BsrDI	GCAATG	3 cut(s)	279, 347, 550
BsrI	ACTGG	1 cut(s)	116
BssMI	GATC	1 cut(s)	465
Bst2UI	CCWGG	3 cut(s)	354, 501, 531
Bst4CI	ACNGT	5 cut(s)	44, 98, 404, 448, 560
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	4 cut(s)	33, 128, 153, 373
BstKTI	GATC	1 cut(s)	468
BstMBI	GATC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstNI	CCWGG	3 cut(s)	354, 501, 531
BstSCI	CCNGG	3 cut(s)	352, 499, 529
BstV1I	GCAGC	2 cut(s)	256, 371
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	178, 504
BtgZI	GCGATG	1 cut(s)	197
BtsCI	GGATG	4 cut(s)	33, 128, 153, 373
Cac8I	GCNNGC	1 cut(s)	180
Cfr13I	GGNCC	3 cut(s)	113, 176, 533
Csp6I	GTAC	2 cut(s)	581, 607
CviAII	CATG	2 cut(s)	125, 133
CviJI	RGCY	4 cut(s)	178, 384, 504, 526
CviKI_1	RGCY	4 cut(s)	178, 384, 504, 526
CviQI	GTAC	2 cut(s)	581, 607
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
Eco47I	GGWCC	2 cut(s)	113, 533
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	3 cut(s)	352, 499, 529
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	2 cut(s)	128, 136
FaiI	YATR	6 cut(s)	101, 126, 134, 331, 413, 493
FatI	CATG	2 cut(s)	124, 132
Fnu4HI	GCNGC	2 cut(s)	270, 385
FokI	GGATG	4 cut(s)	40, 115, 160, 380
Fsp4HI	GCNGC	2 cut(s)	270, 385
GluI	GCNGC	2 cut(s)	270, 385
HaeIII	GGCC	2 cut(s)	178, 504
HapII	CCGG	2 cut(s)	50, 246
Hin1II	CATG	2 cut(s)	128, 136
HinfI	GANTC	4 cut(s)	85, 203, 317, 326
HpaII	CCGG	2 cut(s)	50, 246
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	2 cut(s)	581, 607
Hpy188I	TCNGA	5 cut(s)	202, 214, 322, 465, 574
Hpy188III	TCNNGA	2 cut(s)	50, 77
Hpy8I	GTNNAC	2 cut(s)	581, 607
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	4 cut(s)	207, 367, 581, 595
HpyCH4III	ACNGT	5 cut(s)	44, 98, 404, 448, 560
HpyCH4V	TGCA	4 cut(s)	128, 272, 347, 453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	128, 136
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	422, 439
Lsp1109I	GCAGC	2 cut(s)	256, 371
LweI	GCATC	1 cut(s)	137
MaeIII	GTNAC	3 cut(s)	82, 118, 140
MalI	GATC	1 cut(s)	467
MboI	GATC	1 cut(s)	465
MboII	GAAGA	5 cut(s)	292, 335, 460, 560, 610
MflI	RGATCY	1 cut(s)	465
MluCI	AATT	4 cut(s)	72, 377, 551, 562
MlyI	GAGTC	3 cut(s)	79, 197, 320
MnlI	CCTC	2 cut(s)	24, 167
Mph1103I	ATGCAT	1 cut(s)	130
MroI	TCCGGA	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	384
MspI	CCGG	2 cut(s)	50, 246
MspR9I	CCNGG	3 cut(s)	354, 501, 531
MvaI	CCWGG	3 cut(s)	354, 501, 531
MwoI	GCNNNNNNNGC	1 cut(s)	501
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	2 cut(s)	128, 136
NlaIV	GGNNCC	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	82
NsiI	ATGCAT	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	271, 386
PleI	GAGTC	3 cut(s)	79, 197, 320
PpsI	GAGTC	3 cut(s)	79, 197, 320
Psp6I	CCWGG	3 cut(s)	352, 499, 529
PspGI	CCWGG	3 cut(s)	352, 499, 529
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	3 cut(s)	113, 176, 533
PsuI	RGATCY	1 cut(s)	465
PvuII	CAGCTG	1 cut(s)	384
RsaI	GTAC	2 cut(s)	582, 608
RsaNI	GTAC	2 cut(s)	581, 607
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	2 cut(s)	270, 385
Sau3AI	GATC	1 cut(s)	465
Sau96I	GGNCC	3 cut(s)	113, 176, 533
SchI	GAGTC	3 cut(s)	79, 197, 320
ScrFI	CCNGG	3 cut(s)	354, 501, 531
SetI	ASST	5 cut(s)	8, 228, 386, 528, 606
SfaNI	GCATC	1 cut(s)	137
SinI	GGWCC	2 cut(s)	113, 533
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	4 cut(s)	72, 377, 551, 562
StyD4I	CCNGG	3 cut(s)	352, 499, 529
TaaI	ACNGT	5 cut(s)	44, 98, 404, 448, 560
TaqI	TCGA	1 cut(s)	137
TasI	AATT	4 cut(s)	72, 377, 551, 562
TatI	WGTACW	2 cut(s)	580, 606
TfiI	GAWTC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	269, 384
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	164, 561
VpaK11BI	GGWCC	2 cut(s)	113, 533
XapI	RAATTY	3 cut(s)	72, 377, 551
XmnI	GAANNNNTTC	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.