Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Reverse (-)

28751236 .. 28758196

Gene Structure 6961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G328400.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTGCCTCCGGGCCAACTAGGTTTGCAGGAGCAAGTAAAACTAATGAACCAGATCATTTTGATCCTCAACAACCCATACTTGATGTGAAACCTCTCAATAGCATGCCTTATATTGGTCCACCTACAATGCATCCATCAACAACTACAGACTCTGATGCACGAGAGAAACTGAAGCCAACTGTGATTATTCTACCTCCTGACTCAACAAGGGAACAGTGGAATAAGGCTTTGGAAACCAACAAATCAGGGATTGTTTTGACTGGAGCTGCTGCGAGGGGACAGGTGGGACCAATAATAGGATTAGTTGATATTGGCGAGAACGAAGACTCATACTTATTTCGTGTCAATCTACCAGGGGTTTTAAGGGATGAGAATTTTGAATGCAGCGTTGACATTGATGGAGAAGTATTTATAAAAGGAGTAACTACAACAGGAGAGAAAACAGTGTGCAAAAACTCCCAAGTCTTTAAGATGCAAACACAAAATCTGTGCCCCCCAGGTCACTTCTCTATCTCGTTCCAGCTTCCTGGTCCAGTTGAGTGCCAAAAAGTTACTCTCTCTTTTGAGACTGATGGGATTTTGGAGGCCATTGTGCAGAAAAAATTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

205

Amino Acids

22.15

Weight (kDa)

5.1

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	116, 299
AgsI	TTSAA	1 cut(s)	383
AjnI	CCWGG	3 cut(s)	355, 499, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AluBI	AGCT	2 cut(s)	269, 526
AluI	AGCT	2 cut(s)	269, 526
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	14, 588
ApeKI	GCWGC	4 cut(s)	5, 269, 272, 387
ApoI	RAATTY	1 cut(s)	376
AspS9I	GGNCC	4 cut(s)	14, 119, 290, 533
AsuC2I	CCSGG	1 cut(s)	13
AvaII	GGWCC	3 cut(s)	119, 290, 533
BaeGI	GKGCMC	1 cut(s)	497
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	256, 259, 399
BccI	CCATC	3 cut(s)	145, 395, 569
BciT130I	CCWGG	3 cut(s)	357, 501, 531
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	4 cut(s)	6, 270, 273, 388
BlsI	GCNGC	4 cut(s)	7, 271, 274, 389
Bme1390I	CCNGG	4 cut(s)	13, 357, 501, 531
Bme18I	GGWCC	3 cut(s)	119, 290, 533
BmgT120I	GGNCC	4 cut(s)	14, 119, 290, 533
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	4 cut(s)	13, 357, 501, 531
BmsI	GCATC	3 cut(s)	142, 148, 465
BpiI	GAAGAC	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	356, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 299
Bse1I	ACTGG	2 cut(s)	268, 536
BseBI	CCWGG	3 cut(s)	357, 501, 531
BseDI	CCNNGG	2 cut(s)	356, 499
BseGI	GGATG	2 cut(s)	133, 376
BseLI	CCNNNNNNNGG	2 cut(s)	116, 299
BseNI	ACTGG	2 cut(s)	268, 536
BseSI	GKGCMC	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	256, 259, 399
BshFI	GGCC	2 cut(s)	16, 590
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	294, 303
BslI	CCNNNNNNNGG	2 cut(s)	116, 299
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	2 cut(s)	294, 303
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	16, 590
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	55, 64
BspANI	GGCC	2 cut(s)	16, 590
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	268, 536
BssECI	CCNNGG	2 cut(s)	356, 499
BssMI	GATC	2 cut(s)	55, 64
BssSI	CACGAG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	3 cut(s)	357, 501, 531
Bst4CI	ACNGT	3 cut(s)	184, 219, 448
BstC8I	GCNNGC	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	133, 376
BstKTI	GATC	2 cut(s)	58, 67
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	2 cut(s)	55, 64
BstNI	CCWGG	3 cut(s)	357, 501, 531
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	4 cut(s)	11, 355, 499, 529
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	497
BstV1I	GCAGC	3 cut(s)	256, 259, 399
BstV2I	GAAGAC	1 cut(s)	333
BstXI	CCANNNNNNTGG	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	16, 590
BtsCI	GGATG	2 cut(s)	133, 376
BtsIMutI	CAGTG	2 cut(s)	224, 453
Cac8I	GCNNGC	1 cut(s)	107
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr13I	GGNCC	4 cut(s)	14, 119, 290, 533
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	7 cut(s)	5, 16, 178, 230, 269, 526, 590
CviKI_1	RGCY	7 cut(s)	5, 16, 178, 230, 269, 526, 590
DpnI	GATC	2 cut(s)	57, 66
DpnII	GATC	2 cut(s)	55, 64
Eco47I	GGWCC	3 cut(s)	119, 290, 533
Eco57I	CTGAAG	1 cut(s)	194
EcoRII	CCWGG	3 cut(s)	355, 499, 529
EcoT22I	ATGCAT	1 cut(s)	135
FaeI	CATG	1 cut(s)	109
FaiI	YATR	6 cut(s)	80, 107, 114, 334, 416, 613
FaqI	GGGAC	2 cut(s)	294, 303
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	6, 270, 273, 388
FokI	GGATG	2 cut(s)	120, 383
Fsp4HI	GCNGC	4 cut(s)	6, 270, 273, 388
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	4 cut(s)	6, 270, 273, 388
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	2 cut(s)	16, 590
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	3 cut(s)	152, 203, 329
HpaII	CCGG	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	122, 394
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	2 cut(s)	122, 394
HpyCH4III	ACNGT	3 cut(s)	184, 219, 448
HpyCH4V	TGCA	7 cut(s)	29, 133, 161, 387, 453, 478, 598
Hsp92II	CATG	1 cut(s)	109
Kzo9I	GATC	2 cut(s)	55, 64
LmnI	GCTCC	2 cut(s)	32, 266
Lsp1109I	GCAGC	3 cut(s)	256, 259, 399
LweI	GCATC	3 cut(s)	142, 148, 465
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	424, 503, 553
MalI	GATC	2 cut(s)	57, 66
MboI	GATC	2 cut(s)	55, 64
MboII	GAAGA	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	2 cut(s)	376, 605
MlyI	GAGTC	3 cut(s)	146, 197, 323
MnlI	CCTC	6 cut(s)	19, 78, 105, 207, 270, 580
Mph1103I	ATGCAT	1 cut(s)	135
MseI	TTAA	2 cut(s)	365, 471
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	4 cut(s)	13, 357, 501, 531
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	3 cut(s)	357, 501, 531
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	55, 64
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	503
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	1 cut(s)	109
PaeI	GCATGC	1 cut(s)	109
PctI	GAATGC	1 cut(s)	389
PkrI	GCNGC	4 cut(s)	7, 271, 274, 389
PleI	GAGTC	3 cut(s)	146, 197, 323
PpsI	GAGTC	3 cut(s)	146, 197, 323
PsiI	TTATAA	1 cut(s)	416
Psp6I	CCWGG	3 cut(s)	355, 499, 529
PspGI	CCWGG	3 cut(s)	355, 499, 529
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	4 cut(s)	14, 119, 290, 533
PstNI	CAGNNNCTG	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	365, 471
SatI	GCNGC	4 cut(s)	6, 270, 273, 388
Sau3AI	GATC	2 cut(s)	55, 64
Sau96I	GGNCC	4 cut(s)	14, 119, 290, 533
SchI	GAGTC	3 cut(s)	146, 197, 323
ScrFI	CCNGG	4 cut(s)	13, 357, 501, 531
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	8 cut(s)	26, 97, 127, 199, 271, 288, 505, 528
SfaNI	GCATC	3 cut(s)	142, 148, 465
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	3 cut(s)	119, 290, 533
SphI	GCATGC	1 cut(s)	109
Sse9I	AATT	2 cut(s)	376, 605
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	4 cut(s)	11, 355, 499, 529
TaaI	ACNGT	3 cut(s)	184, 219, 448
TasI	AATT	2 cut(s)	376, 605
Tru1I	TTAA	2 cut(s)	365, 471
Tru9I	TTAA	2 cut(s)	365, 471
TscAI	CASTG	2 cut(s)	224, 453
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	4 cut(s)	5, 269, 272, 387
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	224, 453
VpaK11BI	GGWCC	3 cut(s)	119, 290, 533
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.