Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007209.1

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Reverse (-)

74356 .. 78210

Gene Structure 3855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007209.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgagaccatgtcccatccttgcccgccgatacactgtcatgacaattgttgatgaactcttgcttgttctcgagagtatcacacctcaacattttccctccgccaatatattcacagctcctgtgtcagagactataactccaacccagagcaagcgcgcaaagcccgagcaactcctcgcggcgacgccgtttcagactatctccgaccactctccgatggctttttccggcccgcccaggtttggaagggcaagtcaaagtaatgacccagatcagatagatcctgctaaacccatattgaatgtggcaccgttaaatagcatgccatatattcccccaaccacagagccatcagcagccagaaagtccagtgaacaagaaaaagtgaagccagctatggtgcttttaccttcactcgcaacaagagaagagcgggataagattttggaaaccaccaaaggggttgtattgactggagttgctgcaacgggacaggtgggacccataataggaaaggttgacattggtgaagctgatgactcgtacttatttcgtgtctccctgcctggtgtatctagagatgagaattttagttgttccattgaggctgatggagaagtgaaaattaaaggaacaactacaacaggcgagaaaacagtgtgcaagaactccatggtctttcagatgctctcacagaatcttgccccagcaggtcacttctctatctccttccaccttcctggcccagttgatttccagcagttcactggctcttttgagactgatgggattctcgagggcattgtgaagaagaagatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

274

Amino Acids

29.62

Weight (kDa)

5.87

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	704
AccB1I	GGYRCC	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	436
AccII	CGCG	2 cut(s)	159, 182
AciI	CCGC	5 cut(s)	25, 102, 182, 236, 436
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	589
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	3 cut(s)	245, 462, 512
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	239, 568, 742
AluBI	AGCT	3 cut(s)	119, 398, 536
AluI	AGCT	3 cut(s)	119, 398, 536
Alw26I	GTCTC	3 cut(s)	125, 565, 776
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	3 cut(s)	71, 167, 797
AoxI	GGCC	2 cut(s)	232, 745
ApeKI	GCWGC	2 cut(s)	359, 485
ApoI	RAATTY	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	159, 161
AspS9I	GGNCC	3 cut(s)	233, 503, 746
AsuHPI	GGTGA	1 cut(s)	542
AvaI	CYCGRG	3 cut(s)	71, 167, 797
AvaII	GGWCC	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	371, 472
BccI	CCATC	5 cut(s)	23, 214, 361, 608, 782
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	3 cut(s)	241, 570, 744
BcoDI	GTCTC	3 cut(s)	125, 565, 776
BfaI	CTAG	1 cut(s)	579
BfuAI	ACCTGC	1 cut(s)	704
BisI	GCNGC	3 cut(s)	183, 360, 486
BlsI	GCNGC	3 cut(s)	184, 361, 487
Bme1390I	CCNGG	3 cut(s)	241, 570, 744
Bme18I	GGWCC	1 cut(s)	503
BmeT110I	CYCGRG	3 cut(s)	71, 167, 797
BmgT120I	GGNCC	3 cut(s)	233, 503, 746
BmiI	GGNNCC	3 cut(s)	312, 504, 505
BmrFI	CCNGG	3 cut(s)	241, 570, 744
BmrI	ACTGGG	1 cut(s)	743
BmsI	GCATC	1 cut(s)	678
BmuI	ACTGGG	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	239, 675
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 462, 512
Bse1I	ACTGG	4 cut(s)	372, 481, 749, 775
BseBI	CCWGG	3 cut(s)	241, 570, 744
BseDI	CCNNGG	2 cut(s)	239, 675
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	3 cut(s)	245, 462, 512
BseNI	ACTGG	4 cut(s)	372, 481, 749, 775
BsePI	GCGCGC	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	371, 472
BseYI	CCCAGC	1 cut(s)	709
Bsh1236I	CGCG	2 cut(s)	159, 182
BshFI	GGCC	2 cut(s)	234, 747
BshNI	GGYRCC	1 cut(s)	310
BsiHKCI	CYCGRG	3 cut(s)	71, 167, 797
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	2 cut(s)	507, 516
BslI	CCNNNNNNNGG	3 cut(s)	245, 462, 512
BsmAI	GTCTC	3 cut(s)	125, 565, 776
BsmFI	GGGAC	2 cut(s)	507, 516
BsnI	GGCC	2 cut(s)	234, 747
BsoBI	CYCGRG	3 cut(s)	71, 167, 797
Bsp143I	GATC	2 cut(s)	274, 283
Bsp19I	CCATGG	1 cut(s)	675
BspACI	CCGC	5 cut(s)	25, 102, 182, 236, 436
BspANI	GGCC	2 cut(s)	234, 747
BspFNI	CGCG	2 cut(s)	159, 182
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	312, 504, 505
BspMI	ACCTGC	1 cut(s)	704
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	310
BsrBI	CCGCTC	1 cut(s)	436
BsrI	ACTGG	4 cut(s)	372, 481, 749, 775
BssECI	CCNNGG	2 cut(s)	239, 675
BssHII	GCGCGC	1 cut(s)	157
BssMI	GATC	2 cut(s)	274, 283
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	675
Bst2UI	CCWGG	3 cut(s)	241, 570, 744
Bst4CI	ACNGT	3 cut(s)	37, 315, 661
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	6 cut(s)	25, 155, 159, 236, 326, 396
BstDSI	CCRYGG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	15
BstFNI	CGCG	2 cut(s)	159, 182
BstHHI	GCGC	2 cut(s)	159, 161
BstKTI	GATC	2 cut(s)	277, 286
BstMAI	GTCTC	3 cut(s)	125, 565, 776
BstMBI	GATC	2 cut(s)	274, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	3 cut(s)	241, 570, 744
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	3 cut(s)	239, 568, 742
BstUI	CGCG	2 cut(s)	159, 182
BstV1I	GCAGC	2 cut(s)	371, 472
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	234, 747
BtgI	CCRYGG	1 cut(s)	675
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	4 cut(s)	33, 379, 666, 768
BveI	ACCTGC	1 cut(s)	704
Cac8I	GCNNGC	6 cut(s)	25, 155, 159, 236, 326, 396
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	2 cut(s)	159, 161
Cfr13I	GGNCC	3 cut(s)	233, 503, 746
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	9, 40, 325, 676
CviQI	GTAC	1 cut(s)	547
DpnI	GATC	2 cut(s)	276, 285
DpnII	GATC	2 cut(s)	274, 283
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	675
Eco47I	GGWCC	1 cut(s)	503
Eco88I	CYCGRG	3 cut(s)	71, 167, 797
EcoO109I	RGGNCCY	1 cut(s)	503
EcoRII	CCWGG	3 cut(s)	239, 568, 742
EcoT14I	CCWWGG	1 cut(s)	675
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	4 cut(s)	12, 43, 328, 679
FaqI	GGGAC	2 cut(s)	507, 516
FatI	CATG	4 cut(s)	8, 39, 324, 675
FauI	CCCGC	3 cut(s)	32, 243, 429
Fnu4HI	GCNGC	3 cut(s)	183, 360, 486
FokI	GGATG	1 cut(s)	2
Fsp4HI	GCNGC	3 cut(s)	183, 360, 486
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	2 cut(s)	158, 160
GluI	GCNGC	3 cut(s)	183, 360, 486
GsaI	CCCAGC	1 cut(s)	713
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	234, 747
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	159, 161
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	12, 43, 328, 679
Hin6I	GCGC	2 cut(s)	157, 159
HinP1I	GCGC	2 cut(s)	157, 159
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	3 cut(s)	542, 700, 793
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	3 cut(s)	377, 523, 768
Hpy188I	TCNGA	6 cut(s)	130, 198, 208, 219, 279, 687
Hpy188III	TCNNGA	5 cut(s)	40, 71, 73, 579, 797
Hpy8I	GTNNAC	3 cut(s)	377, 523, 768
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	243, 423, 742, 749
HpyCH4III	ACNGT	3 cut(s)	37, 315, 661
HpyCH4V	TGCA	2 cut(s)	488, 666
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	12, 43, 328, 679
HspAI	GCGC	2 cut(s)	157, 159
KflI	GGGWCCC	1 cut(s)	503
Kzo9I	GATC	2 cut(s)	274, 283
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	2 cut(s)	371, 472
LweI	GCATC	1 cut(s)	678
MaeI	CTAG	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	2 cut(s)	276, 285
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	2 cut(s)	274, 283
MboII	GAAGA	2 cut(s)	443, 823
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	3 cut(s)	45, 589, 627
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	2 cut(s)	167, 231
MnlI	CCTC	5 cut(s)	96, 109, 188, 601, 793
MseI	TTAA	2 cut(s)	317, 630
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	3 cut(s)	241, 570, 744
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	3 cut(s)	241, 570, 744
MvnI	CGCG	2 cut(s)	159, 182
MwoI	GCNNNNNNNGC	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	675
NdeII	GATC	2 cut(s)	274, 283
NlaIII	CATG	4 cut(s)	12, 43, 328, 679
NlaIV	GGNNCC	3 cut(s)	312, 504, 505
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	328
PaeR7I	CTCGAG	2 cut(s)	71, 797
PagI	TCATGA	1 cut(s)	39
PauI	GCGCGC	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	2 cut(s)	700, 793
PflFI	GACNNNGTC	1 cut(s)	9
PkrI	GCNGC	3 cut(s)	184, 361, 487
PleI	GAGTC	1 cut(s)	536
PpsI	GAGTC	1 cut(s)	536
PpuMI	RGGWCCY	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	503
Psp6I	CCWGG	3 cut(s)	239, 568, 742
PspFI	CCCAGC	1 cut(s)	709
PspGI	CCWGG	3 cut(s)	239, 568, 742
PspN4I	GGNNCC	3 cut(s)	312, 504, 505
PspPI	GGNCC	3 cut(s)	233, 503, 746
PspPPI	RGGWCCY	1 cut(s)	503
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	9
PteI	GCGCGC	1 cut(s)	157
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	317, 630
SatI	GCNGC	3 cut(s)	183, 360, 486
Sau3AI	GATC	2 cut(s)	274, 283
Sau96I	GGNCC	3 cut(s)	233, 503, 746
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	3 cut(s)	241, 570, 744
SfaNI	GCATC	1 cut(s)	678
Sfr274I	CTCGAG	2 cut(s)	71, 797
SinI	GGWCC	1 cut(s)	503
SlaI	CTCGAG	2 cut(s)	71, 797
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	71, 797
SmoI	CTYRAG	2 cut(s)	71, 797
SphI	GCATGC	1 cut(s)	328
Sse9I	AATT	3 cut(s)	45, 589, 627
SsiI	CCGC	5 cut(s)	25, 102, 182, 236, 436
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	3 cut(s)	239, 568, 742
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	3 cut(s)	37, 315, 661
TaqI	TCGA	2 cut(s)	72, 798
TasI	AATT	3 cut(s)	45, 589, 627
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	2 cut(s)	700, 793
Tru1I	TTAA	2 cut(s)	317, 630
Tru9I	TTAA	2 cut(s)	317, 630
TscAI	CASTG	4 cut(s)	40, 379, 666, 775
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	2 cut(s)	359, 485
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	1 cut(s)	69
TspRI	CASTG	4 cut(s)	40, 379, 666, 775
Tth111I	GACNNNGTC	1 cut(s)	9
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	1 cut(s)	589
XbaI	TCTAGA	1 cut(s)	578
XceI	RCATGY	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	2 cut(s)	304, 767
XhoI	CTCGAG	2 cut(s)	71, 797
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.