Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Reverse (-)

46173604 .. 46177072

Gene Structure 3469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00425200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTTTTTCCGGCCCGCCCAGGTTTGGAAGGGCAAGTCAAAGTAATGACCCAGATCAGATAGATCCTGCTAAACCCATATTGAATGTGGCACCGTTGAATAGCATGCCATATATTCCCCCAACCACAGAGCCATCAGCAGCCAGAAAGTCCAGCGAACAAGAAAAAGTGATGCCAGCTATGGTGCTTTTACCTTCACTCGCAACTAGAGAAGAGCGGGATAAGATTTTGGAAACCACCAAAGGGGTTGTATTGACTGGAGTTGCTGCAACGGGACAGGTGGGATCCATAATAGGAAAGGTTGACATTGGTGAAGCTGATGACTCGTACTTATTTCGTGTCTCCCTGCCTGGTGTATCTAGAGATGAGAATTTTAGTTGTTCCATTGAGGCTGATGGAGAAGTGAAAATTAAGGGAACAACTACAACAGGCGAGAAAACAGTGTGCAAAAACTCCATGGTCTTTCAGATGCTCTCACAGAATCTTGCCCCAGCTGGTCACTTCTCTATCTCTTTCCACCTTCCTGGCCCAGTTGATTTCCAGCAGTTCACTGGTTCTTTTGAGACTGATGGGATTCTCGAGGGCATTGTGAAGAAGAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

201

Amino Acids

21.52

Weight (kDa)

5.27

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	217
AciI	CCGC	2 cut(s)	17, 217
AclWI	GGATC	3 cut(s)	59, 279, 292
AcsI	RAATTY	1 cut(s)	370
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	26, 243
AgsI	TTSAA	2 cut(s)	85, 100
AjnI	CCWGG	3 cut(s)	20, 349, 523
AluBI	AGCT	3 cut(s)	179, 317, 494
AluI	AGCT	3 cut(s)	179, 317, 494
Alw26I	GTCTC	2 cut(s)	346, 557
AlwI	GGATC	3 cut(s)	59, 279, 292
Ama87I	CYCGRG	1 cut(s)	578
AoxI	GGCC	2 cut(s)	13, 526
ApeKI	GCWGC	2 cut(s)	140, 266
ApoI	RAATTY	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	14, 527
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	578
BamHI	GGATCC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	152, 253
BccI	CCATC	3 cut(s)	142, 389, 563
BciT130I	CCWGG	3 cut(s)	22, 351, 525
BcoDI	GTCTC	2 cut(s)	346, 557
BfaI	CTAG	2 cut(s)	207, 360
BisI	GCNGC	2 cut(s)	141, 267
BlsI	GCNGC	2 cut(s)	142, 268
Bme1390I	CCNGG	3 cut(s)	22, 351, 525
BmeT110I	CYCGRG	1 cut(s)	578
BmgT120I	GGNCC	2 cut(s)	14, 527
BmiI	GGNNCC	2 cut(s)	93, 286
BmrFI	CCNGG	3 cut(s)	22, 351, 525
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	162, 459
BmuI	ACTGGG	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	20, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 243
Bse1I	ACTGG	3 cut(s)	262, 530, 556
BseBI	CCWGG	3 cut(s)	22, 351, 525
BseDI	CCNNGG	2 cut(s)	20, 456
BseLI	CCNNNNNNNGG	2 cut(s)	26, 243
BseNI	ACTGG	3 cut(s)	262, 530, 556
BseXI	GCAGC	2 cut(s)	152, 253
BseYI	CCCAGC	1 cut(s)	490
BshFI	GGCC	2 cut(s)	15, 528
BshNI	GGYRCC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	26, 243
BsmAI	GTCTC	2 cut(s)	346, 557
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	15, 528
BsoBI	CYCGRG	1 cut(s)	578
Bsp143I	GATC	3 cut(s)	55, 64, 284
Bsp19I	CCATGG	1 cut(s)	456
BspACI	CCGC	2 cut(s)	17, 217
BspANI	GGCC	2 cut(s)	15, 528
BspLI	GGNNCC	2 cut(s)	93, 286
BspPI	GGATC	3 cut(s)	59, 279, 292
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	217
BsrI	ACTGG	3 cut(s)	262, 530, 556
BssECI	CCNNGG	2 cut(s)	20, 456
BssMI	GATC	3 cut(s)	55, 64, 284
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	3 cut(s)	22, 351, 525
Bst4CI	ACNGT	2 cut(s)	96, 442
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	3 cut(s)	17, 107, 177
BstDSI	CCRYGG	1 cut(s)	456
BstKTI	GATC	3 cut(s)	58, 67, 287
BstMAI	GTCTC	2 cut(s)	346, 557
BstMBI	GATC	3 cut(s)	55, 64, 284
BstNI	CCWGG	3 cut(s)	22, 351, 525
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	3 cut(s)	20, 349, 523
BstV1I	GCAGC	2 cut(s)	152, 253
BstX2I	RGATCY	2 cut(s)	64, 284
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	2 cut(s)	64, 284
BsuRI	GGCC	2 cut(s)	15, 528
BtgI	CCRYGG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	447, 549
Cac8I	GCNNGC	3 cut(s)	17, 107, 177
Cfr13I	GGNCC	2 cut(s)	14, 527
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	106, 457
CviJI	RGCY	9 cut(s)	5, 15, 133, 143, 179, 317, 392, 494, 528
CviKI_1	RGCY	9 cut(s)	5, 15, 133, 143, 179, 317, 392, 494, 528
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	3 cut(s)	57, 66, 286
DpnII	GATC	3 cut(s)	55, 64, 284
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	578
EcoRII	CCWGG	3 cut(s)	20, 349, 523
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	2 cut(s)	109, 460
FaiI	YATR	8 cut(s)	80, 107, 112, 114, 182, 290, 458, 604
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	105, 456
FauI	CCCGC	2 cut(s)	24, 210
Fnu4HI	GCNGC	2 cut(s)	141, 267
Fsp4HI	GCNGC	2 cut(s)	141, 267
FspBI	CTAG	2 cut(s)	207, 360
GluI	GCNGC	2 cut(s)	141, 267
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	15, 528
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	2 cut(s)	109, 460
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	323, 481, 574
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	304, 549
Hpy188I	TCNGA	2 cut(s)	60, 468
Hpy188III	TCNNGA	2 cut(s)	360, 578
Hpy8I	GTNNAC	2 cut(s)	304, 549
HpyAV	CCTTC	3 cut(s)	24, 204, 530
HpyCH4III	ACNGT	2 cut(s)	96, 442
HpyCH4V	TGCA	2 cut(s)	269, 447
Hsp92II	CATG	2 cut(s)	109, 460
Kzo9I	GATC	3 cut(s)	55, 64, 284
LguI	GCTCTTC	1 cut(s)	207
Lsp1109I	GCAGC	2 cut(s)	152, 253
LweI	GCATC	2 cut(s)	162, 459
MaeI	CTAG	2 cut(s)	207, 360
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	3 cut(s)	57, 66, 286
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	3 cut(s)	55, 64, 284
MboII	GAAGA	2 cut(s)	224, 604
MflI	RGATCY	2 cut(s)	64, 284
MluCI	AATT	2 cut(s)	370, 408
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	2 cut(s)	382, 574
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	3 cut(s)	22, 351, 525
MvaI	CCWGG	3 cut(s)	22, 351, 525
NcoI	CCATGG	1 cut(s)	456
NdeII	GATC	3 cut(s)	55, 64, 284
NlaIII	CATG	2 cut(s)	109, 460
NlaIV	GGNNCC	2 cut(s)	93, 286
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	1 cut(s)	109
PaeI	GCATGC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	578
PciSI	GCTCTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	481, 574
PkrI	GCNGC	2 cut(s)	142, 268
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	3 cut(s)	20, 349, 523
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	3 cut(s)	20, 349, 523
PspN4I	GGNNCC	2 cut(s)	93, 286
PspPI	GGNCC	2 cut(s)	14, 527
PsuI	RGATCY	2 cut(s)	64, 284
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	141, 267
Sau3AI	GATC	3 cut(s)	55, 64, 284
Sau96I	GGNCC	2 cut(s)	14, 527
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	22, 351, 525
SetI	ASST	8 cut(s)	26, 181, 196, 282, 303, 319, 496, 522
SfaNI	GCATC	2 cut(s)	162, 459
Sfr274I	CTCGAG	1 cut(s)	578
SlaI	CTCGAG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SphI	GCATGC	1 cut(s)	109
Sse9I	AATT	2 cut(s)	370, 408
SsiI	CCGC	2 cut(s)	17, 217
SspMI	CTAG	2 cut(s)	207, 360
StyD4I	CCNGG	3 cut(s)	20, 349, 523
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	96, 442
TaqI	TCGA	1 cut(s)	579
TasI	AATT	2 cut(s)	370, 408
TfiI	GAWTC	2 cut(s)	481, 574
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	2 cut(s)	447, 556
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	140, 266
Tsp45I	GTSAC	1 cut(s)	497
TspRI	CASTG	2 cut(s)	447, 556
XapI	RAATTY	1 cut(s)	370
XbaI	TCTAGA	1 cut(s)	359
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	2 cut(s)	85, 548
XhoI	CTCGAG	1 cut(s)	578
XspI	CTAG	2 cut(s)	207, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.