Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Reverse (-)

20399103 .. 20402822

Gene Structure 3720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTTCCCCGCCGCCGTCTTGGGGTAATGATTGTGAAGTTTTGTCAGGGATTTTAGGGTTTGCGGGAACAAGTAAGGTTAATGAACCAGATCGATCAGATCCTCAACAACCAATTCATTTCGATCCTACACAACCCATATTATTAGAACCAACACCTCTGAGAAGTGAGCCTTATATTCCGCCTACAATGGATTTATCAGAAGATACAGATTTTGAAGAACAAGTGGAGCAAGTTAGGATAGTTCTTCCAACTCACTCAACAATAGAAGAGAAGAATAAGATTTTGGAAACCAACCAGTCAGCGATTATCTTGACCGGAGCGGCTGCTGCATTGGCACAAGGGGGACCAACAGTAGGATCGATCGATATTGGCGAGAATGAAGACTCATACTTATTCCGTGTCTCTATACCAGGGGCTTTGAAGGAAGACAAATTTAGTTGTGATGTTGATCCTGATGGGAAAGTATTCATACAAGGAGTAACTACAACAGGAGGGAAAATAGTATGCAGGGATTTCCATGTCTTTAAGATGAAGACGCAAAATCTGTGCCCACCAGGTCACTTCTCTGTCTCTATCCAGCTTCCTGGTCCAGTTGAAAGCGAGCAAAAAATTGTGTCTCTGGAGAATGACGGGATTCTGGAGGGCATTTTGAAGAAAAAATTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

224

Amino Acids

24.18

Weight (kDa)

4.58

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	323
AciI	CCGC	5 cut(s)	11, 14, 65, 182, 323
AclWI	GGATC	4 cut(s)	95, 119, 367, 446
AcsI	RAATTY	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	23, 356
AgsI	TTSAA	4 cut(s)	218, 424, 599, 655
AjnI	CCWGG	3 cut(s)	412, 556, 586
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	1 cut(s)	583
AluI	AGCT	1 cut(s)	583
Alw26I	GTCTC	3 cut(s)	409, 577, 624
AlwI	GGATC	4 cut(s)	95, 119, 367, 446
ApeKI	GCWGC	2 cut(s)	326, 329
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	347, 590
AvaII	GGWCC	2 cut(s)	347, 590
BaeGI	GKGCMC	1 cut(s)	554
BbsI	GAAGAC	3 cut(s)	390, 435, 542
BbvI	GCAGC	2 cut(s)	313, 316
BccI	CCATC	1 cut(s)	452
BciT130I	CCWGG	3 cut(s)	414, 558, 588
BcoDI	GTCTC	3 cut(s)	409, 577, 624
BisI	GCNGC	4 cut(s)	14, 324, 327, 330
BlsI	GCNGC	4 cut(s)	15, 325, 328, 331
Bme1390I	CCNGG	3 cut(s)	414, 558, 588
Bme18I	GGWCC	2 cut(s)	347, 590
BmgT120I	GGNCC	2 cut(s)	347, 590
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	3 cut(s)	414, 558, 588
BpiI	GAAGAC	3 cut(s)	390, 435, 542
BpmI	CTGGAG	2 cut(s)	644, 662
Bsa29I	ATCGAT	3 cut(s)	94, 362, 366
BsaBI	GATNNNNATC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	413
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 356
Bse1I	ACTGG	2 cut(s)	298, 593
Bse8I	GATNNNNATC	1 cut(s)	450
BseBI	CCWGG	3 cut(s)	414, 558, 588
BseCI	ATCGAT	3 cut(s)	94, 362, 366
BseDI	CCNNGG	1 cut(s)	413
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	23, 356
BseMII	CTCAG	1 cut(s)	152
BseNI	ACTGG	2 cut(s)	298, 593
BseSI	GKGCMC	1 cut(s)	554
BseXI	GCAGC	2 cut(s)	313, 316
Bsh1285I	CGRYCG	1 cut(s)	366
BshVI	ATCGAT	3 cut(s)	94, 362, 366
BsiEI	CGRYCG	1 cut(s)	366
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	23, 356
BsmAI	GTCTC	3 cut(s)	409, 577, 624
BsmFI	GGGAC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	554
Bsp143I	GATC	7 cut(s)	91, 95, 100, 124, 359, 363, 451
BspACI	CCGC	5 cut(s)	11, 14, 65, 182, 323
BspCNI	CTCAG	1 cut(s)	153
BspDI	ATCGAT	3 cut(s)	94, 362, 366
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	4 cut(s)	95, 119, 367, 446
BsrBI	CCGCTC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	298, 593
BssECI	CCNNGG	1 cut(s)	413
BssMI	GATC	7 cut(s)	91, 95, 100, 124, 359, 363, 451
Bst2UI	CCWGG	3 cut(s)	414, 558, 588
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	1 cut(s)	161
BstKTI	GATC	7 cut(s)	94, 98, 103, 127, 362, 366, 454
BstMAI	GTCTC	3 cut(s)	409, 577, 624
BstMBI	GATC	7 cut(s)	91, 95, 100, 124, 359, 363, 451
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 335
BstNI	CCWGG	3 cut(s)	414, 558, 588
BstSCI	CCNGG	3 cut(s)	412, 556, 586
BstSLI	GKGCMC	1 cut(s)	554
BstV1I	GCAGC	2 cut(s)	313, 316
BstV2I	GAAGAC	3 cut(s)	390, 435, 542
BstX2I	RGATCY	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	100
Bsu15I	ATCGAT	3 cut(s)	94, 362, 366
BsuTUI	ATCGAT	3 cut(s)	94, 362, 366
Cac8I	GCNNGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	347, 590
ClaI	ATCGAT	3 cut(s)	94, 362, 366
CseI	GACGC	1 cut(s)	547
CsiI	ACCWGGT	1 cut(s)	556
CviAII	CATG	1 cut(s)	521
CviJI	RGCY	5 cut(s)	5, 172, 326, 419, 583
CviKI_1	RGCY	5 cut(s)	5, 172, 326, 419, 583
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	7 cut(s)	93, 97, 102, 126, 361, 365, 453
DpnII	GATC	7 cut(s)	91, 95, 100, 124, 359, 363, 451
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	347, 590
EcoRII	CCWGG	3 cut(s)	412, 556, 586
FaeI	CATG	1 cut(s)	524
FaiI	YATR	7 cut(s)	140, 177, 391, 410, 473, 508, 522
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	1 cut(s)	520
FauI	CCCGC	2 cut(s)	18, 58
Fnu4HI	GCNGC	4 cut(s)	14, 324, 327, 330
Fsp4HI	GCNGC	4 cut(s)	14, 324, 327, 330
GluI	GCNGC	4 cut(s)	14, 324, 327, 330
GsuI	CTGGAG	2 cut(s)	644, 662
HapII	CCGG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	547
Hin1II	CATG	1 cut(s)	524
HinfI	GANTC	2 cut(s)	386, 637
HpaII	CCGG	1 cut(s)	318
Hpy188I	TCNGA	3 cut(s)	100, 162, 202
Hpy188III	TCNNGA	4 cut(s)	313, 455, 623, 641
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	2 cut(s)	332, 510
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 335
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	524
Kzo9I	GATC	7 cut(s)	91, 95, 100, 124, 359, 363, 451
LmnI	GCTCC	2 cut(s)	229, 320
Lsp1109I	GCAGC	2 cut(s)	313, 316
MabI	ACCWGGT	1 cut(s)	556
MaeIII	GTNAC	2 cut(s)	481, 560
MalI	GATC	7 cut(s)	93, 97, 102, 126, 361, 365, 453
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	7 cut(s)	91, 95, 100, 124, 359, 363, 451
MboII	GAAGA	9 cut(s)	215, 230, 239, 281, 286, 395, 440, 547, 667
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	554
MluCI	AATT	4 cut(s)	114, 434, 612, 662
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	4 cut(s)	114, 168, 488, 637
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	3 cut(s)	81, 528, 670
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	414, 558, 588
MvaI	CCWGG	3 cut(s)	414, 558, 588
MwoI	GCNNNNNNNGC	2 cut(s)	329, 335
NdeII	GATC	7 cut(s)	91, 95, 100, 124, 359, 363, 451
NlaIII	CATG	1 cut(s)	524
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	637
PkrI	GCNGC	4 cut(s)	15, 325, 328, 331
Ple19I	CGATCG	1 cut(s)	366
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	3 cut(s)	412, 556, 586
PspGI	CCWGG	3 cut(s)	412, 556, 586
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	347, 590
PsuI	RGATCY	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	81, 528, 670
SatI	GCNGC	4 cut(s)	14, 324, 327, 330
Sau3AI	GATC	7 cut(s)	91, 95, 100, 124, 359, 363, 451
Sau96I	GGNCC	2 cut(s)	347, 590
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	414, 558, 588
SduI	GDGCHC	1 cut(s)	554
SetI	ASST	5 cut(s)	81, 160, 562, 585, 670
SexAI	ACCWGGT	1 cut(s)	556
SinI	GGWCC	2 cut(s)	347, 590
Sse9I	AATT	4 cut(s)	114, 434, 612, 662
SsiI	CCGC	5 cut(s)	11, 14, 65, 182, 323
StyD4I	CCNGG	3 cut(s)	412, 556, 586
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	4 cut(s)	94, 123, 362, 366
TasI	AATT	4 cut(s)	114, 434, 612, 662
TauI	GCSGC	2 cut(s)	16, 326
TfiI	GAWTC	1 cut(s)	637
Tru1I	TTAA	3 cut(s)	81, 528, 670
Tru9I	TTAA	3 cut(s)	81, 528, 670
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	2 cut(s)	326, 329
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	5 cut(s)	99, 107, 396, 460, 548
TspGWI	ACGGA	1 cut(s)	389
VpaK11BI	GGWCC	2 cut(s)	347, 590
XapI	RAATTY	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.