Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Forward (+)

4082413 .. 4086044

Gene Structure 3632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG060400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCATATATTCCCCCAACCACAGAGCCATCAGCCGCCAGAAAGTCCAGTGAACAAGAAAAAGTGAAGCCAGCTATGGTGCTTTTACCTTCACTCGCAACAAGAGAAGAGCGGGATAAGATTTTGGAAACCACCAAAGGGGTTGTATTGACTGGAGTTGCTGCAACGGGACAGGTGGGGCCCATAATAGGAAAGGTTGACATTGGTGAAGCTGATGACTCGTACTTATTTCGTGTCTCCCTGCCTGGTGTATCTAGAGATGAGAATTTTAGTTGTTCCATTGAGGCTGATGGAGAAGTGAAAATTAAAGGAACAACTACAACAGGCGAGAAAACAGTGTGCAAGAACTCCATGGTCTTTCAGATGCTCTCACAGAATCTTGCCCCAGCAGGTCACTTCTCTATCTCCTTCCACCTTCCTGGCCCGGTTGATTTCCAGCAGTTCACTGGCTCTTTTGAGACTGATGGGATTCTCGAGGGCATTGTGAAGAAGAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

166

Amino Acids

17.83

Weight (kDa)

5.45

Isoelectric Point (pI)

26.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	380
AccBSI	CCGCTC	1 cut(s)	112
AciI	CCGC	2 cut(s)	36, 112
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	138, 188
AjnI	CCWGG	2 cut(s)	244, 418
AluBI	AGCT	2 cut(s)	74, 212
AluI	AGCT	2 cut(s)	74, 212
Alw26I	GTCTC	2 cut(s)	241, 452
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	2 cut(s)	179, 421
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	265
AspS9I	GGNCC	3 cut(s)	179, 180, 422
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	37, 284, 458
BciT130I	CCWGG	2 cut(s)	246, 420
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	2 cut(s)	241, 452
BfaI	CTAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	380
BisI	GCNGC	2 cut(s)	36, 162
BlsI	GCNGC	2 cut(s)	37, 163
Bme1390I	CCNGG	3 cut(s)	246, 420, 425
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	3 cut(s)	179, 180, 422
BmiI	GGNNCC	2 cut(s)	180, 181
BmrFI	CCNGG	3 cut(s)	246, 420, 425
BmsI	GCATC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 188
Bse1I	ACTGG	3 cut(s)	48, 157, 451
BseBI	CCWGG	2 cut(s)	246, 420
BseDI	CCNNGG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	138, 188
BseNI	ACTGG	3 cut(s)	48, 157, 451
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	385
BshFI	GGCC	2 cut(s)	181, 423
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	138, 188
BsmAI	GTCTC	2 cut(s)	241, 452
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	2 cut(s)	181, 423
BsoBI	CYCGRG	1 cut(s)	473
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	2 cut(s)	36, 112
BspANI	GGCC	2 cut(s)	181, 423
BspLI	GGNNCC	2 cut(s)	180, 181
BspMI	ACCTGC	1 cut(s)	380
BspQI	GCTCTTC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	112
BsrI	ACTGG	3 cut(s)	48, 157, 451
BssECI	CCNNGG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	246, 420
Bst4CI	ACNGT	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	351
BstMAI	GTCTC	2 cut(s)	241, 452
BstNI	CCWGG	2 cut(s)	246, 420
BstSCI	CCNGG	3 cut(s)	244, 418, 423
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	419
BsuRI	GGCC	2 cut(s)	181, 423
BtgI	CCRYGG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	55, 342, 444
BveI	ACCTGC	1 cut(s)	380
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	179, 180, 422
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	9 cut(s)	28, 35, 70, 74, 181, 212, 287, 423, 450
CviKI_1	RGCY	9 cut(s)	28, 35, 70, 74, 181, 212, 287, 423, 450
CviQI	GTAC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	244, 418
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	355
FaiI	YATR	6 cut(s)	7, 9, 77, 185, 353, 499
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	1 cut(s)	351
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	36, 162
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	36, 162
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	36, 162
GsaI	CCCAGC	1 cut(s)	389
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	181, 423
HapII	CCGG	1 cut(s)	425
Hin1II	CATG	1 cut(s)	355
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	3 cut(s)	218, 376, 469
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	53, 199, 444
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	255, 473
Hpy8I	GTNNAC	3 cut(s)	53, 199, 444
HpyAV	CCTTC	3 cut(s)	99, 418, 425
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	164, 342
Hsp92II	CATG	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	102
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	392
MbiI	CCGCTC	1 cut(s)	112
MboII	GAAGA	2 cut(s)	119, 499
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	2 cut(s)	265, 303
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	2 cut(s)	277, 469
MseI	TTAA	1 cut(s)	306
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	3 cut(s)	246, 420, 425
MvaI	CCWGG	2 cut(s)	246, 420
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	351
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	2 cut(s)	180, 181
NmuCI	GTSAC	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	376, 469
PkrI	GCNGC	2 cut(s)	37, 163
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	244, 418
PspFI	CCCAGC	1 cut(s)	385
PspGI	CCWGG	2 cut(s)	244, 418
PspN4I	GGNNCC	2 cut(s)	180, 181
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	3 cut(s)	179, 180, 422
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	36, 162
Sau96I	GGNCC	3 cut(s)	179, 180, 422
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	3 cut(s)	246, 420, 425
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	7 cut(s)	76, 91, 177, 198, 214, 394, 417
SfaNI	GCATC	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	2 cut(s)	265, 303
SsiI	CCGC	2 cut(s)	36, 112
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	244, 418, 423
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	337
TaqI	TCGA	1 cut(s)	474
TasI	AATT	2 cut(s)	265, 303
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	376, 469
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	3 cut(s)	55, 342, 451
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	392
TspRI	CASTG	3 cut(s)	55, 342, 451
XapI	RAATTY	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	473
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.