Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Reverse (-)

29257654 .. 29264998

Gene Structure 7345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1207400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTTCCCCGCCGCCGTCTTGGTTCGCGGGAACAAGTAAGATTAATGAAGCAGATCAATCAGATCCTCAACAACCAATTCATTTTGATCCTACACAACCCATATTATTAGAACCAACACCTCTGAGAAGTGAGCCTTATATTCCGCCTACAATGGATTTATCAGAAAATATAGATTTTGAAGAACAAATGGAGCAAGTTATGATAGTTCTTCCAACTCACTCAACAATAGAAGAGAAGAATAAGATTTTGGAAACCAACGAGTCAGCGATTATTTTGACTGGAGCGGCTGCTGCATTGGCACAAGGGGGACCTACAGTAGGATCAGTTGATATTGGCGAGAATGAAGACTCATACTTATTCCGTGTCTCTATACCAGGGGCTTTGAAGGAAGACAAATTTAGATGTGATGTTGATCCCGATGGGAAAGTATTCGTACAAGGAGTAACTACGACAGGAGGGAAAATAGTATGCAGGGATTTCCATGTCTTTAAGATGAAGACGCAAAATCTGTGCCCACCAGGTCACTTCTCTGTCTCGATCCAGCTTCCTGGTCCAGTTGAAAGCGAGCAAAAAATTGTGTCTCTAGATAATGATGGGATTTTGGAGGGCATTGTGAAGAAAAAATTACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

212

Amino Acids

23.01

Weight (kDa)

4.6

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	29
AciI	CCGC	5 cut(s)	11, 14, 29, 146, 287
AclWI	GGATC	5 cut(s)	59, 83, 331, 410, 535
AcsI	RAATTY	1 cut(s)	398
AfaI	GTAC	1 cut(s)	438
AfiI	CCNNNNNNNGG	1 cut(s)	320
AgsI	TTSAA	3 cut(s)	182, 388, 563
AjnI	CCWGG	3 cut(s)	376, 520, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	1 cut(s)	547
AluI	AGCT	1 cut(s)	547
Alw26I	GTCTC	3 cut(s)	373, 541, 588
AlwI	GGATC	5 cut(s)	59, 83, 331, 410, 535
ApeKI	GCWGC	2 cut(s)	290, 293
ApoI	RAATTY	1 cut(s)	398
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	311, 554
AvaII	GGWCC	2 cut(s)	311, 554
BaeGI	GKGCMC	1 cut(s)	518
BbsI	GAAGAC	3 cut(s)	354, 399, 506
BbvI	GCAGC	2 cut(s)	277, 280
BccI	CCATC	2 cut(s)	416, 590
BciT130I	CCWGG	3 cut(s)	378, 522, 552
BcoDI	GTCTC	3 cut(s)	373, 541, 588
BfaI	CTAG	1 cut(s)	587
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	4 cut(s)	14, 288, 291, 294
BlsI	GCNGC	4 cut(s)	15, 289, 292, 295
Bme1390I	CCNGG	3 cut(s)	378, 522, 552
Bme18I	GGWCC	2 cut(s)	311, 554
BmgT120I	GGNCC	2 cut(s)	311, 554
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	3 cut(s)	378, 522, 552
BpiI	GAAGAC	3 cut(s)	354, 399, 506
BpmI	CTGGAG	1 cut(s)	303
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	2 cut(s)	286, 557
Bse8I	GATNNNNATC	1 cut(s)	414
BseBI	CCWGG	3 cut(s)	378, 522, 552
BseDI	CCNNGG	1 cut(s)	377
BseJI	GATNNNNATC	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	286, 557
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	277, 280
Bsh1236I	CGCG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	3 cut(s)	373, 541, 588
BsmFI	GGGAC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	6 cut(s)	55, 64, 88, 323, 415, 540
BspACI	CCGC	5 cut(s)	11, 14, 29, 146, 287
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	5 cut(s)	59, 83, 331, 410, 535
BsrBI	CCGCTC	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	286, 557
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	6 cut(s)	55, 64, 88, 323, 415, 540
Bst2UI	CCWGG	3 cut(s)	378, 522, 552
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	6 cut(s)	58, 67, 91, 326, 418, 543
BstMAI	GTCTC	3 cut(s)	373, 541, 588
BstMBI	GATC	6 cut(s)	55, 64, 88, 323, 415, 540
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 299
BstNI	CCWGG	3 cut(s)	378, 522, 552
BstSCI	CCNGG	3 cut(s)	376, 520, 550
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	518
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	277, 280
BstV2I	GAAGAC	3 cut(s)	354, 399, 506
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	311, 554
CseI	GACGC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	1 cut(s)	485
CviJI	RGCY	5 cut(s)	5, 136, 290, 383, 547
CviKI_1	RGCY	5 cut(s)	5, 136, 290, 383, 547
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	6 cut(s)	57, 66, 90, 325, 417, 542
DpnII	GATC	6 cut(s)	55, 64, 88, 323, 415, 540
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	311, 554
EcoNI	CCTNNNNNAGG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	3 cut(s)	376, 520, 550
FaeI	CATG	1 cut(s)	488
FaiI	YATR	8 cut(s)	104, 141, 173, 203, 355, 374, 472, 486
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	1 cut(s)	484
FauI	CCCGC	2 cut(s)	18, 22
Fnu4HI	GCNGC	4 cut(s)	14, 288, 291, 294
Fsp4HI	GCNGC	4 cut(s)	14, 288, 291, 294
FspBI	CTAG	1 cut(s)	587
GluI	GCNGC	4 cut(s)	14, 288, 291, 294
GsuI	CTGGAG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	511
Hin1II	CATG	1 cut(s)	488
HinfI	GANTC	2 cut(s)	263, 350
Hpy188I	TCNGA	3 cut(s)	64, 126, 166
Hpy188III	TCNNGA	3 cut(s)	419, 538, 587
HpyAV	CCTTC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	296, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 299
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	488
Kzo9I	GATC	6 cut(s)	55, 64, 88, 323, 415, 540
LmnI	GCTCC	2 cut(s)	193, 284
Lsp1109I	GCAGC	2 cut(s)	277, 280
MabI	ACCWGGT	1 cut(s)	520
MaeI	CTAG	1 cut(s)	587
MaeIII	GTNAC	2 cut(s)	445, 524
MalI	GATC	6 cut(s)	57, 66, 90, 325, 417, 542
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	6 cut(s)	55, 64, 88, 323, 415, 540
MboII	GAAGA	8 cut(s)	194, 203, 245, 250, 359, 404, 511, 631
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	4 cut(s)	78, 398, 576, 626
MlyI	GAGTC	2 cut(s)	272, 344
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	4 cut(s)	78, 132, 452, 601
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	3 cut(s)	45, 492, 634
MspR9I	CCNGG	3 cut(s)	378, 522, 552
MvaI	CCWGG	3 cut(s)	378, 522, 552
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	293, 299
NdeII	GATC	6 cut(s)	55, 64, 88, 323, 415, 540
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	431
PkrI	GCNGC	4 cut(s)	15, 289, 292, 295
PleI	GAGTC	2 cut(s)	271, 344
PpsI	GAGTC	2 cut(s)	271, 344
PpuMI	RGGWCCY	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	311
Psp6I	CCWGG	3 cut(s)	376, 520, 550
PspGI	CCWGG	3 cut(s)	376, 520, 550
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	311, 554
PspPPI	RGGWCCY	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	45, 492, 634
SatI	GCNGC	4 cut(s)	14, 288, 291, 294
Sau3AI	GATC	6 cut(s)	55, 64, 88, 323, 415, 540
Sau96I	GGNCC	2 cut(s)	311, 554
SchI	GAGTC	2 cut(s)	272, 344
ScrFI	CCNGG	3 cut(s)	378, 522, 552
SduI	GDGCHC	1 cut(s)	518
SetI	ASST	5 cut(s)	124, 316, 526, 549, 634
SexAI	ACCWGGT	1 cut(s)	520
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	2 cut(s)	311, 554
Sse9I	AATT	4 cut(s)	78, 398, 576, 626
SsiI	CCGC	5 cut(s)	11, 14, 29, 146, 287
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	3 cut(s)	376, 520, 550
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	539
TasI	AATT	4 cut(s)	78, 398, 576, 626
TauI	GCSGC	2 cut(s)	16, 290
Tru1I	TTAA	3 cut(s)	45, 492, 634
Tru9I	TTAA	3 cut(s)	45, 492, 634
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	2 cut(s)	290, 293
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	4 cut(s)	63, 71, 360, 512
TspGWI	ACGGA	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	311, 554
VspI	ATTAAT	1 cut(s)	45
XagI	CCTNNNNNAGG	1 cut(s)	318
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	586
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.