Rh3BG060000

Belongs to the small heat shock protein (HSP20) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
4084584 .. 4087809
3226 bp
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UTR
Exon/CDS
Intron
Rh3BG060000.1

Sequence Viewer

Length: 264 bp
ATGATAGTTAAGTCTGATAAGCAAGTGAAGGACAGTTGTTCCATTGAGGCTGATGGAGAAGTGAAAATTAAAGGAACAACTACAACAGGCGAGAAAACAGTGTGCAAGAACTCCATGGTCTTTCAGATGCTCTCACAGAATCTTGCCCCAGCAGGTCACTTCTCTATCTCCTTCCACCTTCCTGGCCCAGTTGATTTCCAGCAGTTCACTGGCTCTTTTGAGACTGATGGGATTCTCGAGGGCATTGTGAAGAAGAAGATATAA

Protein Analysis

87

Amino Acids

9.45

Weight (kDa)

6.71

Isoelectric Point (pI)

17.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 236
BccI CCATC 2 cut(s) 47, 221
BciT130I CCWGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 143
Bme1390I CCNGG 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 188, 214
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 188, 214
BseYI CCCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 215
BsnI GGCC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 236
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 1 cut(s) 186
BspMI ACCTGC 1 cut(s) 143
BsrI ACTGG 2 cut(s) 188, 214
BssECI CCNNGG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 35, 100
BstDSI CCRYGG 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstXI CCANNNNNNTGG 1 cut(s) 182
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 105, 207
BveI ACCTGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 185
CviAII CATG 1 cut(s) 115
CviJI RGCY 3 cut(s) 50, 186, 213
CviKI_1 RGCY 3 cut(s) 50, 186, 213
Eco130I CCWWGG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 116, 262
FatI CATG 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 152
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 1 cut(s) 118
HinfI GANTC 2 cut(s) 139, 232
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 2 cut(s) 16, 126
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 3 cut(s) 22, 181, 188
HpyCH4III ACNGT 2 cut(s) 35, 100
HpyCH4V TGCA 1 cut(s) 105
Hsp92II CATG 1 cut(s) 118
LpnPI CCDG 8 cut(s) 72, 138, 162, 168, 195, 195, 201, 212
LweI GCATC 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 155
MboII GAAGA 1 cut(s) 262
MluCI AATT 1 cut(s) 66
MnlI CCTC 2 cut(s) 40, 232
MseI TTAA 2 cut(s) 9, 69
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 114
NlaIII CATG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 236
PfeI GAWTC 2 cut(s) 139, 232
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 148
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 9, 69
Sau96I GGNCC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 183
SetI ASST 2 cut(s) 157, 180
SfaNI GCATC 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 35, 100
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 66
TfiI GAWTC 2 cut(s) 139, 232
Tru1I TTAA 2 cut(s) 9, 69
Tru9I TTAA 2 cut(s) 9, 69
TscAI CASTG 2 cut(s) 105, 214
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspRI CASTG 2 cut(s) 105, 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.