Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042770.1

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 632

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042770.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 316 bp

atgccatatattcccccaaccacagagccatcagcagccagaaagtccagtgaacaagaaaaagtgaagccagctatggtgcttttaccttcactcgcaacaagagaagagcgggataagattttggaaaccaccaaaggggttgtattgactggagttgctgcaacgggacaggtgggacccataataggaaaggttgacattggtgaagctgatgactcgtacttatttcgtgtctccctgcctggtgtatctagagatgagaattttagttgttccattgaggctgatggagaagtgaaaattaaaggaacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

105

Amino Acids

11.19

Weight (kDa)

4.97

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	112
AciI	CCGC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	138, 188
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	74, 212
AluI	AGCT	2 cut(s)	74, 212
Alw26I	GTCTC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	35, 161
ApoI	RAATTY	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	47, 148
BccI	CCATC	2 cut(s)	37, 284
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	36, 162
BlsI	GCNGC	2 cut(s)	37, 163
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	2 cut(s)	180, 181
BmrFI	CCNGG	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 188
Bse1I	ACTGG	2 cut(s)	48, 157
BseBI	CCWGG	1 cut(s)	246
BseLI	CCNNNNNNNGG	2 cut(s)	138, 188
BseNI	ACTGG	2 cut(s)	48, 157
BseXI	GCAGC	2 cut(s)	47, 148
BslFI	GGGAC	2 cut(s)	183, 192
BslI	CCNNNNNNNGG	2 cut(s)	138, 188
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	2 cut(s)	183, 192
BspACI	CCGC	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	180, 181
BspQI	GCTCTTC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	48, 157
Bst2UI	CCWGG	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	47, 148
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	223
CviJI	RGCY	6 cut(s)	28, 38, 70, 74, 212, 287
CviKI_1	RGCY	6 cut(s)	28, 38, 70, 74, 212, 287
CviQI	GTAC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	244
FaiI	YATR	4 cut(s)	7, 9, 77, 185
FaqI	GGGAC	2 cut(s)	183, 192
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	36, 162
Fsp4HI	GCNGC	2 cut(s)	36, 162
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	36, 162
GsuI	CTGGAG	1 cut(s)	174
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	218
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	53, 199
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	2 cut(s)	53, 199
HpyAV	CCTTC	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	164
KflI	GGGWCCC	1 cut(s)	179
LguI	GCTCTTC	1 cut(s)	102
LpnPI	CCDG	8 cut(s)	52, 61, 84, 138, 158, 231, 254, 258
Lsp1109I	GCAGC	2 cut(s)	47, 148
MaeI	CTAG	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	119
MluCI	AATT	2 cut(s)	265, 303
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	1 cut(s)	277
MseI	TTAA	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
NlaIV	GGNNCC	2 cut(s)	180, 181
PciSI	GCTCTTC	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	37, 163
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	180, 181
PspPI	GGNCC	1 cut(s)	179
PspPPI	RGGWCCY	1 cut(s)	179
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	2 cut(s)	36, 162
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	5 cut(s)	76, 91, 177, 198, 214
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	265, 303
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	244
TasI	AATT	2 cut(s)	265, 303
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	2 cut(s)	35, 161
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	265
XbaI	TCTAGA	1 cut(s)	254
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.