Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Reverse (-)

22142136 .. 22146528

Gene Structure 4393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTTTCTTATAACGATCCTCACAAAACAAGTAGCCTTGTTGACTTGGTGTCGTTCTATCAATACACTTGGAAATATTTATGGTTTCCGAAAAGTACCTCACTCTCAGCTAAGCGCAGGAAGCGGCAGAGACCCGAAGAACCTCCCCGTTGCGACGCCGTCTCGCAAATCTCCTACCTCTCTCCGATGGCTGCCCCTCCGCCGTCTTGGATGTTTTTTAAGTGTTGTACTAAAAGATCCAGCCCAATCCTCATATGCCCTTGTTTATTTAAGAGAAAACGGAAAACCTAATTGCCTAAGTTTCTTCCTCTCTTCTTCTAGTTTGCTCTGGTTCTCCCTTGTTTTTGCCAAAATGCCGTTTAGGTTCGCAGGAACAAGTAAGACTAATGAACCAGATCAATCAGATCCTCAACAACCAAAGTTTGATCCTACACAACCCATATTATTACATCCAACACCTCTCAGAAGTGAGCCTTATATTCCGCCTACAATGGATTTATCAGAAACCACAGACTTTGATGCAGAAGAACAGATGCAGCAAGTTATGATAGTTCTACCAACTCAGTCAACAATAGAAGAGAAGAATAAGATTTTGGAAACCAATGAGTCAACAATTATTTTGACTGGAGCTGCTGCTGCATTGGCAAAAGGGGGACCAACAGTAGGATCAGTTGATATTGGTGAGAACGAAGACTCATACTTATTCCGTGTCTCTATACCAGGGGCTTTGAAGGAAGACAAATTTAGTTGTAATGTTGATCCTGATGGGAAAGTATTAATACAAGGAGTAACTACGACAGGAGGGAAAATCGTATGCAGGGATTTCCATGTCTTTAAGATGAAGACGCAAAATCTGTGCCCACCAGGTCATTTCTCTGTCTCGATCCAGCTTCCTGGTCCAGTTGAAAGCGAGCAAAAAATTGTCTCTCTTGAGAATGAGGGGATTTTGGAGGGCATTGTGAAGAAAAAATTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

326

Amino Acids

35.78

Weight (kDa)

8.14

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AciI	CCGC	3 cut(s)	123, 199, 482
AclWI	GGATC	7 cut(s)	10, 230, 398, 419, 673, 752, 877
AcsI	RAATTY	1 cut(s)	740
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	96, 228
AfiI	CCNNNNNNNGG	1 cut(s)	662
AgsI	TTSAA	2 cut(s)	730, 905
AhdI	GACNNNNNGTC	1 cut(s)	48
AjnI	CCWGG	3 cut(s)	718, 862, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	3 cut(s)	109, 629, 889
AluI	AGCT	3 cut(s)	109, 629, 889
Alw26I	GTCTC	5 cut(s)	123, 165, 715, 883, 928
AlwI	GGATC	7 cut(s)	10, 230, 398, 419, 673, 752, 877
ApeKI	GCWGC	5 cut(s)	190, 535, 629, 632, 635
ApoI	RAATTY	1 cut(s)	740
AseI	ATTAAT	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	653, 896
AsuHPI	GGTGA	1 cut(s)	692
AvaII	GGWCC	2 cut(s)	653, 896
BaeGI	GKGCMC	1 cut(s)	860
BbsI	GAAGAC	3 cut(s)	696, 741, 848
BbvI	GCAGC	5 cut(s)	177, 547, 616, 619, 622
BccI	CCATC	2 cut(s)	180, 758
BceAI	ACGGC	3 cut(s)	142, 186, 340
BciT130I	CCWGG	3 cut(s)	720, 864, 894
BcoDI	GTCTC	5 cut(s)	123, 165, 715, 883, 928
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	6 cut(s)	124, 191, 536, 630, 633, 636
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	6 cut(s)	125, 192, 537, 631, 634, 637
Bme1390I	CCNGG	3 cut(s)	720, 864, 894
Bme18I	GGWCC	2 cut(s)	653, 896
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	653, 896
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	3 cut(s)	720, 864, 894
BmsI	GCATC	2 cut(s)	508, 522
BpiI	GAAGAC	3 cut(s)	696, 741, 848
BpmI	CTGGAG	1 cut(s)	645
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	950
BsaHI	GRCGYC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	719
Bsc4I	CCNNNNNNNGG	1 cut(s)	662
Bse1I	ACTGG	2 cut(s)	628, 899
BseBI	CCWGG	3 cut(s)	720, 864, 894
BseDI	CCNNGG	1 cut(s)	719
BseGI	GGATG	2 cut(s)	215, 448
BseLI	CCNNNNNNNGG	1 cut(s)	662
BseMII	CTCAG	3 cut(s)	119, 475, 575
BseNI	ACTGG	2 cut(s)	628, 899
BseSI	GKGCMC	1 cut(s)	860
BseXI	GCAGC	5 cut(s)	177, 547, 616, 619, 622
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	1 cut(s)	662
BsmAI	GTCTC	5 cut(s)	123, 165, 715, 883, 928
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	666
Bso31I	GGTCTC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	860
Bsp143I	GATC	8 cut(s)	15, 235, 394, 403, 424, 665, 757, 882
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	3 cut(s)	123, 199, 482
BspCNI	CTCAG	3 cut(s)	118, 474, 574
BspLI	GGNNCC	1 cut(s)	654
BspPI	GGATC	7 cut(s)	10, 230, 398, 419, 673, 752, 877
BspTNI	GGTCTC	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	628, 899
BssECI	CCNNGG	1 cut(s)	719
BssMI	GATC	8 cut(s)	15, 235, 394, 403, 424, 665, 757, 882
BssNI	GRCGYC	1 cut(s)	155
Bst2UI	CCWGG	3 cut(s)	720, 864, 894
Bst4CI	ACNGT	1 cut(s)	661
Bst6I	CTCTTC	2 cut(s)	316, 570
BstACI	GRCGYC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	5 cut(s)	105, 110, 296, 461, 561
BstF5I	GGATG	2 cut(s)	215, 448
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	8 cut(s)	18, 238, 397, 406, 427, 668, 760, 885
BstMAI	GTCTC	5 cut(s)	123, 165, 715, 883, 928
BstMBI	GATC	8 cut(s)	15, 235, 394, 403, 424, 665, 757, 882
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 635, 641
BstNI	CCWGG	3 cut(s)	720, 864, 894
BstSCI	CCNGG	3 cut(s)	718, 862, 892
BstSLI	GKGCMC	1 cut(s)	860
BstV1I	GCAGC	5 cut(s)	177, 547, 616, 619, 622
BstV2I	GAAGAC	3 cut(s)	696, 741, 848
BstX2I	RGATCY	2 cut(s)	235, 403
BstXI	CCANNNNNNTGG	1 cut(s)	893
BstYI	RGATCY	2 cut(s)	235, 403
BtsCI	GGATG	2 cut(s)	215, 448
Cac8I	GCNNGC	1 cut(s)	911
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	2 cut(s)	653, 896
CseI	GACGC	2 cut(s)	163, 853
CsiI	ACCWGGT	1 cut(s)	862
Csp6I	GTAC	2 cut(s)	95, 227
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	1 cut(s)	827
CviJI	RGCY	8 cut(s)	35, 109, 190, 242, 472, 629, 725, 889
CviKI_1	RGCY	8 cut(s)	35, 109, 190, 242, 472, 629, 725, 889
CviQI	GTAC	2 cut(s)	95, 227
DdeI	CTNAG	5 cut(s)	105, 110, 296, 461, 561
DpnI	GATC	8 cut(s)	17, 237, 396, 405, 426, 667, 759, 884
DpnII	GATC	8 cut(s)	15, 235, 394, 403, 424, 665, 757, 882
DriI	GACNNNNNGTC	1 cut(s)	48
Eam1104I	CTCTTC	2 cut(s)	316, 570
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	2 cut(s)	316, 570
EciI	GGCGGA	2 cut(s)	188, 471
Eco31I	GGTCTC	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	653, 896
EcoRII	CCWGG	3 cut(s)	718, 862, 892
Esp3I	CGTCTC	1 cut(s)	165
FaeI	CATG	1 cut(s)	830
FalI	AAGNNNNNCTT	2 cut(s)	457, 489
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	1 cut(s)	826
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	6 cut(s)	124, 191, 536, 630, 633, 636
FokI	GGATG	2 cut(s)	222, 435
Fsp4HI	GCNGC	6 cut(s)	124, 191, 536, 630, 633, 636
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	6 cut(s)	124, 191, 536, 630, 633, 636
GsuI	CTGGAG	1 cut(s)	645
HgaI	GACGC	2 cut(s)	163, 853
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	830
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	3 cut(s)	42, 567, 609
HindII	GTYRAC	3 cut(s)	42, 567, 609
HinfI	GANTC	2 cut(s)	605, 692
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	3 cut(s)	42, 567, 609
Hpy188I	TCNGA	5 cut(s)	89, 185, 403, 464, 502
Hpy188III	TCNNGA	3 cut(s)	761, 880, 929
Hpy8I	GTNNAC	3 cut(s)	42, 567, 609
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	724
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4V	TGCA	4 cut(s)	521, 535, 638, 816
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 635, 641
HpyF3I	CTNAG	5 cut(s)	105, 110, 296, 461, 561
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	830
HspAI	GCGC	1 cut(s)	114
Kzo9I	GATC	8 cut(s)	15, 235, 394, 403, 424, 665, 757, 882
LmnI	GCTCC	1 cut(s)	626
Lsp1109I	GCAGC	5 cut(s)	177, 547, 616, 619, 622
LweI	GCATC	2 cut(s)	508, 522
MabI	ACCWGGT	1 cut(s)	862
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	8 cut(s)	17, 237, 396, 405, 426, 667, 759, 884
MboI	GATC	8 cut(s)	15, 235, 394, 403, 424, 665, 757, 882
MflI	RGATCY	2 cut(s)	235, 403
MhlI	GDGCHC	1 cut(s)	860
MluCI	AATT	5 cut(s)	289, 612, 740, 918, 968
MlyI	GAGTC	2 cut(s)	614, 686
MmeI	TCCRAC	1 cut(s)	476
MseI	TTAA	4 cut(s)	218, 269, 776, 834
MspR9I	CCNGG	3 cut(s)	720, 864, 894
MvaI	CCWGG	3 cut(s)	720, 864, 894
MwoI	GCNNNNNNNGC	3 cut(s)	120, 635, 641
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	8 cut(s)	15, 235, 394, 403, 424, 665, 757, 882
NlaIII	CATG	1 cut(s)	830
NlaIV	GGNNCC	1 cut(s)	654
PflFI	GACNNNGTC	1 cut(s)	157
PkrI	GCNGC	6 cut(s)	125, 192, 537, 631, 634, 637
PleI	GAGTC	2 cut(s)	613, 686
PpsI	GAGTC	2 cut(s)	613, 686
PshBI	ATTAAT	1 cut(s)	776
PsiI	TTATAA	1 cut(s)	11
Psp6I	CCWGG	3 cut(s)	718, 862, 892
PspGI	CCWGG	3 cut(s)	718, 862, 892
PspN4I	GGNNCC	1 cut(s)	654
PspPI	GGNCC	2 cut(s)	653, 896
PsuI	RGATCY	2 cut(s)	235, 403
PsyI	GACNNNGTC	1 cut(s)	157
RsaI	GTAC	2 cut(s)	96, 228
RsaNI	GTAC	2 cut(s)	95, 227
SaqAI	TTAA	4 cut(s)	218, 269, 776, 834
SatI	GCNGC	6 cut(s)	124, 191, 536, 630, 633, 636
Sau3AI	GATC	8 cut(s)	15, 235, 394, 403, 424, 665, 757, 882
Sau96I	GGNCC	2 cut(s)	653, 896
SchI	GAGTC	2 cut(s)	614, 686
ScrFI	CCNGG	3 cut(s)	720, 864, 894
SduI	GDGCHC	1 cut(s)	860
SexAI	ACCWGGT	1 cut(s)	862
SfaNI	GCATC	2 cut(s)	508, 522
SinI	GGWCC	2 cut(s)	653, 896
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
Sse9I	AATT	5 cut(s)	289, 612, 740, 918, 968
SsiI	CCGC	3 cut(s)	123, 199, 482
SspI	AATATT	1 cut(s)	76
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	718, 862, 892
TaaI	ACNGT	1 cut(s)	661
TaqI	TCGA	1 cut(s)	881
TasI	AATT	5 cut(s)	289, 612, 740, 918, 968
TatI	WGTACW	1 cut(s)	226
TauI	GCSGC	1 cut(s)	126
Tru1I	TTAA	4 cut(s)	218, 269, 776, 834
Tru9I	TTAA	4 cut(s)	218, 269, 776, 834
TseI	GCWGC	5 cut(s)	190, 535, 629, 632, 635
TspDTI	ATGAA	2 cut(s)	402, 854
TspGWI	ACGGA	2 cut(s)	294, 695
Tth111I	GACNNNGTC	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	653, 896
VspI	ATTAAT	1 cut(s)	776
XapI	RAATTY	1 cut(s)	740
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.