Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Reverse (-)

29855418 .. 29860137

Gene Structure 4720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1221700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTTCCCCACCGCCGTCTTGGTTTGCGGGAACAAGTAAGACTAATGAACCAGATCAATCAGATCCTCAACAACCAAAGTTTGATCCTACACAACCCATATTATTACATCCAACACCTCTCAGAAGTGAGCCTTATATTCCGCCTACAATGGATTTATCAGAAACTACAGACTTTGATGCAGAAGAACAGATGCAGCAAGTTATGATAGTTCTACCAACTCAGTCAACAATAGAAGAGAAGAATAAGATTTTGGAAACCAATGAGTCAACGATTATTTTGACTGGAGCTGCTGCTGCATTGGCACAAGGGGGACCAACAGTAGGATCAGTTGATATTGGCGAGAACGAAGACTCATACTTATTCCGTGTCTCTATACCAGGGGCTTTGAAGGAAGATAAATTTAGTTGTAATGTTGATCCTGATGGGAAAGTATTAGTACAAGGAGTAACTACGACAGGAGGGAAAATCGTATGCAGGGATTTCCATGTCTTTAAGATGAAGACACAAAATCTGTGCCCACCAGGTCACTTCTCTGTCTCGATCCAGCTTCCTGGTCCAGTTGAAAGTGAGAAAAAAATTGTCTCTCTCGAGAATGAGGGGATTTTGGAGGGCATTGTGAAGAAAAAATTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

213

Amino Acids

23.01

Weight (kDa)

4.72

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	14, 29, 143
AclWI	GGATC	5 cut(s)	59, 80, 334, 413, 538
AcsI	RAATTY	1 cut(s)	401
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	391, 566
AjnI	CCWGG	3 cut(s)	379, 523, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	2 cut(s)	290, 550
AluI	AGCT	2 cut(s)	290, 550
Alw26I	GTCTC	3 cut(s)	376, 544, 589
AlwI	GGATC	5 cut(s)	59, 80, 334, 413, 538
Ama87I	CYCGRG	1 cut(s)	590
ApeKI	GCWGC	4 cut(s)	196, 290, 293, 296
ApoI	RAATTY	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	314, 557
AvaI	CYCGRG	1 cut(s)	590
AvaII	GGWCC	2 cut(s)	314, 557
BaeGI	GKGCMC	1 cut(s)	521
BbsI	GAAGAC	2 cut(s)	357, 509
BbvI	GCAGC	4 cut(s)	208, 277, 280, 283
BccI	CCATC	1 cut(s)	419
BciT130I	CCWGG	3 cut(s)	381, 525, 555
BcoDI	GTCTC	3 cut(s)	376, 544, 589
BfmI	CTRYAG	1 cut(s)	168
BisI	GCNGC	4 cut(s)	197, 291, 294, 297
BlsI	GCNGC	4 cut(s)	198, 292, 295, 298
Bme1390I	CCNGG	3 cut(s)	381, 525, 555
Bme18I	GGWCC	2 cut(s)	314, 557
BmeT110I	CYCGRG	1 cut(s)	590
BmgT120I	GGNCC	2 cut(s)	314, 557
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	3 cut(s)	381, 525, 555
BmsI	GCATC	2 cut(s)	169, 183
BpiI	GAAGAC	2 cut(s)	357, 509
BpmI	CTGGAG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	2 cut(s)	289, 560
BseBI	CCWGG	3 cut(s)	381, 525, 555
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	136, 236
BseNI	ACTGG	2 cut(s)	289, 560
BseSI	GKGCMC	1 cut(s)	521
BseXI	GCAGC	4 cut(s)	208, 277, 280, 283
BsiHKCI	CYCGRG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	327
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	3 cut(s)	376, 544, 589
BsmFI	GGGAC	1 cut(s)	327
BsoBI	CYCGRG	1 cut(s)	590
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	6 cut(s)	55, 64, 85, 326, 418, 543
BspACI	CCGC	3 cut(s)	14, 29, 143
BspCNI	CTCAG	2 cut(s)	135, 235
BspLI	GGNNCC	1 cut(s)	315
BspPI	GGATC	5 cut(s)	59, 80, 334, 413, 538
BsrI	ACTGG	2 cut(s)	289, 560
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	6 cut(s)	55, 64, 85, 326, 418, 543
Bst2UI	CCWGG	3 cut(s)	381, 525, 555
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	122, 222
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	6 cut(s)	58, 67, 88, 329, 421, 546
BstMAI	GTCTC	3 cut(s)	376, 544, 589
BstMBI	GATC	6 cut(s)	55, 64, 85, 326, 418, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 302
BstNI	CCWGG	3 cut(s)	381, 525, 555
BstSCI	CCNGG	3 cut(s)	379, 523, 553
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	521
BstV1I	GCAGC	4 cut(s)	208, 277, 280, 283
BstV2I	GAAGAC	2 cut(s)	357, 509
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	314, 557
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	5 cut(s)	5, 133, 290, 386, 550
CviKI_1	RGCY	5 cut(s)	5, 133, 290, 386, 550
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	2 cut(s)	122, 222
DpnI	GATC	6 cut(s)	57, 66, 87, 328, 420, 545
DpnII	GATC	6 cut(s)	55, 64, 85, 326, 418, 543
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	314, 557
Eco88I	CYCGRG	1 cut(s)	590
EcoRII	CCWGG	3 cut(s)	379, 523, 553
FaeI	CATG	1 cut(s)	491
FaiI	YATR	8 cut(s)	101, 138, 206, 358, 377, 475, 489, 637
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	1 cut(s)	487
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	197, 291, 294, 297
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	197, 291, 294, 297
GluI	GCNGC	4 cut(s)	197, 291, 294, 297
GsuI	CTGGAG	1 cut(s)	306
Hin1II	CATG	1 cut(s)	491
HincII	GTYRAC	2 cut(s)	228, 270
HindII	GTYRAC	2 cut(s)	228, 270
HinfI	GANTC	2 cut(s)	266, 353
Hpy166II	GTNNAC	2 cut(s)	228, 270
Hpy188I	TCNGA	3 cut(s)	64, 125, 163
Hpy188III	TCNNGA	4 cut(s)	422, 541, 590, 592
Hpy8I	GTNNAC	2 cut(s)	228, 270
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	4 cut(s)	182, 196, 299, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 302
HpyF3I	CTNAG	2 cut(s)	122, 222
Hsp92II	CATG	1 cut(s)	491
Kzo9I	GATC	6 cut(s)	55, 64, 85, 326, 418, 543
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	4 cut(s)	208, 277, 280, 283
LweI	GCATC	2 cut(s)	169, 183
MabI	ACCWGGT	1 cut(s)	523
MaeIII	GTNAC	2 cut(s)	448, 527
MalI	GATC	6 cut(s)	57, 66, 87, 328, 420, 545
MboI	GATC	6 cut(s)	55, 64, 85, 326, 418, 543
MboII	GAAGA	7 cut(s)	197, 248, 253, 362, 407, 514, 634
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	3 cut(s)	401, 579, 629
MlyI	GAGTC	2 cut(s)	275, 347
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	5 cut(s)	78, 129, 455, 592, 604
MseI	TTAA	1 cut(s)	495
MspR9I	CCNGG	3 cut(s)	381, 525, 555
MvaI	CCWGG	3 cut(s)	381, 525, 555
MwoI	GCNNNNNNNGC	2 cut(s)	296, 302
NdeII	GATC	6 cut(s)	55, 64, 85, 326, 418, 543
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	527
PaeR7I	CTCGAG	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	198, 292, 295, 298
PleI	GAGTC	2 cut(s)	274, 347
PpsI	GAGTC	2 cut(s)	274, 347
Psp6I	CCWGG	3 cut(s)	379, 523, 553
PspGI	CCWGG	3 cut(s)	379, 523, 553
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	314, 557
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	4 cut(s)	197, 291, 294, 297
Sau3AI	GATC	6 cut(s)	55, 64, 85, 326, 418, 543
Sau96I	GGNCC	2 cut(s)	314, 557
SchI	GAGTC	2 cut(s)	275, 347
ScrFI	CCNGG	3 cut(s)	381, 525, 555
SduI	GDGCHC	1 cut(s)	521
SetI	ASST	4 cut(s)	121, 292, 529, 552
SexAI	ACCWGGT	1 cut(s)	523
SfaNI	GCATC	2 cut(s)	169, 183
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	590
SinI	GGWCC	2 cut(s)	314, 557
SlaI	CTCGAG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	3 cut(s)	401, 579, 629
SsiI	CCGC	3 cut(s)	14, 29, 143
StyD4I	CCNGG	3 cut(s)	379, 523, 553
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	2 cut(s)	542, 591
TasI	AATT	3 cut(s)	401, 579, 629
TatI	WGTACW	1 cut(s)	439
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	4 cut(s)	196, 290, 293, 296
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	2 cut(s)	63, 515
TspGWI	ACGGA	1 cut(s)	356
VpaK11BI	GGWCC	2 cut(s)	314, 557
XapI	RAATTY	1 cut(s)	401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XhoI	CTCGAG	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.