Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009308.1

Orthogroup ID

OG0004766

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1212

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009308.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 355 bp

gtttggaagggcaagtcaaagtaatgacccagatcagatagatcctgctaaacccatattgaatgtggcaccgttaaatagcatgccatatattcccccaaccacagagccatcagcagccagaaagtccagtgaacaagaaaaagtgaagccagctatggtgcttttaccttcactcgcaacaagagaagagcgggataagattttggaaaccaccaaaggggttgtattgactggagttgctgcaacgggacaggtgggacccataataggaaaggttgacattggtgaagctgatgactcgtacttatttcgtgtctccctgcctggtgtatctagagatgagagtgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSP20

Protein Analysis

117

Amino Acids

12.47

Weight (kDa)

4.86

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54850
fragaria_vesca	FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550 FvH4_6g05550
malus_domestica	MD04G1207400.v1.1 MD12G1221700.v1.1
prunus_persica	Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1 Prupe.6G328400_v2.0.a1
pyrus_communis	pycom04g18350 pycom12g20780
rosa_chinensis	RchiOBHm_Chr3g0454331
rosa_laevigata	RLG00000025460
rosa_multiflora	Rmu_sc0000006.1_g000023 Rmu_sc0007209.1_g000015 Rmu_sc0009308.1_g000001 Rmu_sc0042770.1_g000001
rosa_roxburghii	Rroxscaffold_165G00437160 Rroxscaffold_6G00425200
rosa_rugosa	Rorug02G0654200 Rorug02G0654200
rosa_samantha	Rh3AG058300 Rh3BG060000 Rh3CG059100 Rh3DG060400
rosa_wichuraiana	Rw3G004480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	1 cut(s)	194
AclWI	GGATC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	306
AfiI	CCNNNNNNNGG	2 cut(s)	220, 270
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	156, 294
AluI	AGCT	2 cut(s)	156, 294
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	117, 243
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	129, 230
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	1 cut(s)	337
BisI	GCNGC	2 cut(s)	118, 244
BlsI	GCNGC	2 cut(s)	119, 245
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	3 cut(s)	70, 262, 263
BmrFI	CCNGG	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 270
Bse1I	ACTGG	2 cut(s)	130, 239
BseBI	CCWGG	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	220, 270
BseNI	ACTGG	2 cut(s)	130, 239
BseXI	GCAGC	2 cut(s)	129, 230
BshNI	GGYRCC	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	265, 274
BslI	CCNNNNNNNGG	2 cut(s)	220, 270
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	2 cut(s)	265, 274
Bsp143I	GATC	2 cut(s)	32, 41
BspACI	CCGC	1 cut(s)	194
BspLI	GGNNCC	3 cut(s)	70, 262, 263
BspPI	GGATC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	130, 239
BssMI	GATC	2 cut(s)	32, 41
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	84, 154
BstKTI	GATC	2 cut(s)	35, 44
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	32, 41
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	129, 230
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	84, 154
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	305
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	110, 120, 152, 156, 294
CviKI_1	RGCY	5 cut(s)	110, 120, 152, 156, 294
CviQI	GTAC	1 cut(s)	305
DpnI	GATC	2 cut(s)	34, 43
DpnII	GATC	2 cut(s)	32, 41
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	326
FaeI	CATG	1 cut(s)	86
FaiI	YATR	6 cut(s)	57, 84, 89, 91, 159, 267
FaqI	GGGAC	2 cut(s)	265, 274
FatI	CATG	1 cut(s)	82
FauI	CCCGC	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	118, 244
Fsp4HI	GCNGC	2 cut(s)	118, 244
FspBI	CTAG	1 cut(s)	337
GluI	GCNGC	2 cut(s)	118, 244
GsuI	CTGGAG	1 cut(s)	256
Hin1II	CATG	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	281
HindII	GTYRAC	1 cut(s)	281
HinfI	GANTC	1 cut(s)	300
HphI	GGTGA	1 cut(s)	300
Hpy166II	GTNNAC	2 cut(s)	135, 281
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	2 cut(s)	135, 281
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	86
KflI	GGGWCCC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	32, 41
LguI	GCTCTTC	1 cut(s)	184
Lsp1109I	GCAGC	2 cut(s)	129, 230
MaeI	CTAG	1 cut(s)	337
MalI	GATC	2 cut(s)	34, 43
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	2 cut(s)	32, 41
MboII	GAAGA	1 cut(s)	201
MflI	RGATCY	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	294
MseI	TTAA	1 cut(s)	75
MspR9I	CCNGG	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	328
NdeII	GATC	2 cut(s)	32, 41
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	3 cut(s)	70, 262, 263
NspI	RCATGY	1 cut(s)	86
PaeI	GCATGC	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	119, 245
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	3 cut(s)	70, 262, 263
PspPI	GGNCC	1 cut(s)	261
PspPPI	RGGWCCY	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	306
RsaNI	GTAC	1 cut(s)	305
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	118, 244
Sau3AI	GATC	2 cut(s)	32, 41
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	294
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	5 cut(s)	158, 173, 259, 280, 296
SinI	GGWCC	1 cut(s)	261
SphI	GCATGC	1 cut(s)	86
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	2 cut(s)	117, 243
TspRI	CASTG	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	261
XbaI	TCTAGA	1 cut(s)	336
XceI	RCATGY	1 cut(s)	86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.