AT1G55000

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013410
Physical Location & Seq
Forward (+)
20514634 .. 20516558
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55000.2

Sequence Viewer

Length: 666 bp
ATGGCGCTTTATTGCCGTGATACACTAATCATCATCTTCCAAAAGCTCACCGTCGCCGATCTAGCGCGTGCGAGCTGCGTCTGTAAGGTTTGGAATTCTGTAGCCACAGAAGACGATCTTGTTGTATCTGCTTTCACGGCTCCATGGCGGATCAAAGAACTTGTTGGAAGACCAGCTTCTGTTTCGTTTTGGAGAGATAACGGAATCTGGAAATTTGCTATTTCTCATCGGATTTGTCGTGGTGATAGTGTGACTAGCCTCGCCGTCAAATACGCCGTTCAGGTTATGGACATAAAGCGGCTAAACAACATGATGAGCGACCATGGTATTTACTCAAGAGACAGACTGCTTATCCCAATAAGCAATCCTGAAATTCTCGCAAACACTACGTGTTATGTTGAGCTAGACAAATATGCCAAACGAGAAGTAGCCGTTCTTTACCTCGAAGGTGCACCGAAGAGAGAACAACCTGTACCTGGTACGAATCAACAATCCAACTTATCAGCCGATGGAAAGCGTAGGCTAATTGAATCTCTAAGGAGAAGCATGCAAGTTGATGATGGAACTGCTCTATACTACTTGGCTATCGCTGAAGGTGATCCTAGATCCGCATTGTCTGAGTTCTCGGCTGATCTCAGGTGGGAGAGGCAGGCTGGTCTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LysM

Protein Analysis

221

Amino Acids

24.9

Weight (kDa)

8.58

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 39 9.2e-06 F-box domain
F-box-like PF12937 8 - 40 1.8e-07 F-box-like
LysM PF01476 77 - 119 3.9e-07 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55000 AT1G55000 AT1G55000
fragaria_vesca FvH4_6g06020
malus_domestica MD04G1204800.v1.1 MD12G1218500.v1.1
prunus_persica Prupe.6G324800_v2.0.a1
pyrus_communis pycom04g18100
rosa_chinensis RchiOBHm_Chr3g0454981
rosa_laevigata RLG00000025396
rosa_multiflora Rmu_sc0001861.1_g000058
rosa_roxburghii Rroxscaffold_6G00424630
rosa_rugosa Rorug03G0003700
rosa_samantha Rh3AG063300 Rh3BG065300 Rh3CG064100 Rh3DG065300
rosa_wichuraiana Rw3G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 67
AciI CCGC 3 cut(s) 148, 298, 609
AclWI GGATC 3 cut(s) 158, 593, 600
AcsI RAATTY 3 cut(s) 94, 212, 372
AcuI CTGAAG 1 cut(s) 612
AdeI CACNNNGTG 1 cut(s) 390
AfaI GTAC 2 cut(s) 474, 481
AfiI CCNNNNNNNGG 1 cut(s) 476
AflIII ACRYGT 1 cut(s) 389
AgsI TTSAA 1 cut(s) 530
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 4 cut(s) 46, 75, 176, 403
AluI AGCT 4 cut(s) 46, 75, 176, 403
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 1 cut(s) 333
Alw44I GTGCAC 1 cut(s) 450
AlwI GGATC 3 cut(s) 158, 593, 600
AlwNI CAGNNNCTG 1 cut(s) 179
ApaLI GTGCAC 1 cut(s) 450
ApeKI GCWGC 1 cut(s) 75
ApoI RAATTY 3 cut(s) 94, 212, 372
AspLEI GCGC 2 cut(s) 7, 67
AsuHPI GGTGA 3 cut(s) 40, 254, 608
BaeGI GKGCMC 1 cut(s) 454
BbsI GAAGAC 2 cut(s) 117, 175
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 503, 554
BceAI ACGGC 4 cut(s) 153, 248, 260, 416
BciT130I CCWGG 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 333
BfaI CTAG 5 cut(s) 62, 255, 404, 603, 664
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 76, 299
BlsI GCNGC 2 cut(s) 77, 300
Bme1390I CCNGG 1 cut(s) 477
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 477
BpiI GAAGAC 2 cut(s) 117, 175
BpuEI CTTGAG 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 143, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 476
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 143, 322
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 2 cut(s) 609, 649
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 6 cut(s) 58, 115, 150, 598, 605, 631
Bsp19I CCATGG 2 cut(s) 143, 322
BspACI CCGC 3 cut(s) 148, 298, 609
BspCNI CTCAG 2 cut(s) 610, 648
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 3 cut(s) 158, 593, 600
BssECI CCNNGG 2 cut(s) 143, 322
BssMI GATC 6 cut(s) 58, 115, 150, 598, 605, 631
BssT1I CCWWGG 2 cut(s) 143, 322
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 390
BstC8I GCNNGC 4 cut(s) 69, 73, 548, 651
BstDEI CTNAG 3 cut(s) 536, 618, 635
BstDSI CCRYGG 2 cut(s) 143, 322
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 67
BstKTI GATC 6 cut(s) 61, 118, 153, 601, 608, 634
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 6 cut(s) 58, 115, 150, 598, 605, 631
BstMWI GCNNNNNNNGC 2 cut(s) 62, 137
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 1 cut(s) 475
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 454
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 2 cut(s) 117, 175
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
BtgI CCRYGG 2 cut(s) 143, 322
Cac8I GCNNGC 4 cut(s) 69, 73, 548, 651
CaiI CAGNNNCTG 1 cut(s) 179
CfoI GCGC 2 cut(s) 7, 67
CseI GACGC 1 cut(s) 67
CsiI ACCWGGT 1 cut(s) 475
Csp6I GTAC 2 cut(s) 473, 480
CviAII CATG 4 cut(s) 144, 310, 323, 547
CviQI GTAC 2 cut(s) 473, 480
DdeI CTNAG 3 cut(s) 536, 618, 635
DpnI GATC 6 cut(s) 60, 117, 152, 600, 607, 633
DpnII GATC 6 cut(s) 58, 115, 150, 598, 605, 631
DraIII CACNNNGTG 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
EciI GGCGGA 1 cut(s) 163
Eco130I CCWWGG 2 cut(s) 143, 322
Eco57I CTGAAG 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 2 cut(s) 143, 322
ErhI CCWWGG 2 cut(s) 143, 322
FaeI CATG 4 cut(s) 147, 313, 326, 550
FaiI YATR 9 cut(s) 145, 287, 293, 311, 324, 396, 414, 548, 574
FalI AAGNNNNNCTT 4 cut(s) 102, 134, 160, 192
FatI CATG 4 cut(s) 143, 309, 322, 546
Fnu4HI GCNGC 2 cut(s) 76, 299
Fsp4HI GCNGC 2 cut(s) 76, 299
FspBI CTAG 5 cut(s) 62, 255, 404, 603, 664
GlaI GCGC 2 cut(s) 6, 66
GluI GCNGC 2 cut(s) 76, 299
HaeII RGCGCY 1 cut(s) 8
HgaI GACGC 1 cut(s) 67
HhaI GCGC 2 cut(s) 7, 67
Hin1II CATG 4 cut(s) 147, 313, 326, 550
Hin6I GCGC 2 cut(s) 5, 65
HinP1I GCGC 2 cut(s) 5, 65
HinfI GANTC 3 cut(s) 204, 484, 530
HphI GGTGA 3 cut(s) 40, 254, 608
Hpy166II GTNNAC 1 cut(s) 452
Hpy188I TCNGA 2 cut(s) 231, 619
Hpy188III TCNNGA 3 cut(s) 208, 336, 368
Hpy8I GTNNAC 1 cut(s) 452
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 440, 587
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 452, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 137
HpyF3I CTNAG 3 cut(s) 536, 618, 635
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 4 cut(s) 147, 313, 326, 550
HspAI GCGC 2 cut(s) 5, 65
Kzo9I GATC 6 cut(s) 58, 115, 150, 598, 605, 631
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 62
MabI ACCWGGT 1 cut(s) 475
MaeI CTAG 5 cut(s) 62, 255, 404, 603, 664
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 250
MalI GATC 6 cut(s) 60, 117, 152, 600, 607, 633
MboI GATC 6 cut(s) 58, 115, 150, 598, 605, 631
MboII GAAGA 4 cut(s) 28, 122, 180, 469
MflI RGATCY 1 cut(s) 605
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 4 cut(s) 94, 212, 372, 525
MmeI TCCRAC 2 cut(s) 145, 519
MnlI CCTC 3 cut(s) 269, 452, 639
MseI TTAA 1 cut(s) 660
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 62, 137
NcoI CCATGG 2 cut(s) 143, 322
NdeII GATC 6 cut(s) 58, 115, 150, 598, 605, 631
NlaIII CATG 4 cut(s) 147, 313, 326, 550
NlaIV GGNNCC 1 cut(s) 141
NmeAIII GCCGAG 1 cut(s) 605
NmuCI GTSAC 1 cut(s) 250
NspI RCATGY 1 cut(s) 550
PaeI GCATGC 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PfeI GAWTC 3 cut(s) 204, 484, 530
PkrI GCNGC 2 cut(s) 77, 300
Ppu21I YACGTR 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 456, 488
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 2 cut(s) 474, 481
RsaNI GTAC 2 cut(s) 473, 480
SaqAI TTAA 1 cut(s) 660
SatI GCNGC 2 cut(s) 76, 299
Sau3AI GATC 6 cut(s) 58, 115, 150, 598, 605, 631
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 1 cut(s) 454
SexAI ACCWGGT 1 cut(s) 475
SfcI CTRYAG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SphI GCATGC 1 cut(s) 550
Sse9I AATT 4 cut(s) 94, 212, 372, 525
SsiI CCGC 3 cut(s) 148, 298, 609
SspMI CTAG 5 cut(s) 62, 255, 404, 603, 664
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 2 cut(s) 143, 322
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 1 cut(s) 392
TaqI TCGA 1 cut(s) 444
TasI AATT 4 cut(s) 94, 212, 372, 525
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 204, 484, 530
Tru1I TTAA 1 cut(s) 660
Tru9I TTAA 1 cut(s) 660
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 1 cut(s) 75
Tsp45I GTSAC 1 cut(s) 250
TspGWI ACGGA 1 cut(s) 216
VneI GTGCAC 1 cut(s) 450
XapI RAATTY 3 cut(s) 94, 212, 372
XceI RCATGY 1 cut(s) 550
XspI CTAG 5 cut(s) 62, 255, 404, 603, 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.