RchiOBHm_Chr3g0454981

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013410
Physical Location & Seq
Forward (+)
4840546 .. 4841925
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42197

Sequence Viewer

Length: 843 bp
ATGGGTTGTTGGGGCGACGAAGAAAACGACGACGAAATCCTCAACCCTCTCAGCCCCACCTCCACCTCCTCCACCACCACCACCACCCAAACCCTAGACGACTCGTCATCCTCCTCCTCCGGCGGCTACACCACCATACCCCCGATGAACTCTCACTTCTCGGCCCTGGCCTGCCGTGACACCCTCCGCCTCATCTTCGAGAAGCTTCCGATCCCCGACCTCGCTCGCTCCAGCTGCGTCTGCCGCGCCTGGAACTCCGTCGCCTCCGATCAAGAGATCGTCGCCAACGCCTTCAAATCGCCGTGGAAGCTCAAGGACGTCGTCGGAAAACCCGCCTCCGGAAGCTTCTGGAGAGATAACAGCCTCGGGAAATTCGCCATCTCACACCGAATTGCCCGCGGCGATAGCGTCGCTAGCCTCGCCGTCAAGTATTCCGTTCAGGTGATGGACATAAAGCGCTTGAACAACATGATGAGCGAGCATGGAATCTACTCGAGGGAGAGGTTGTTGATTCCGATAAGCGATCCTGAAATGCTTGTGGGAGCTACCTGCTATGTCGAAGTGGATCCCTGTGCCAAGAGAGAAGTTGCGGTGTTGTATTTGGATGATGGTCCTGACCAGAAATCAATGAGCTCTTGCTCTTTGTCGCAGAAGAGTGCCGACAGCAGTGGCTTGAATTCTGAACTAGGTAAGAAGAGGGTTCTTGAGTCTCTGAGGAGAAGCATGCACGTTGATGATGCCACTGCTCTGTACTACTTGTCCATTGCTGATGGGGATCCGAGAGCTGCATTGTCTCAGTTCTCGCAGGACCTTAGGTGGGAGACTCATTCGGCCTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LysM

Protein Analysis

280

Amino Acids

30.65

Weight (kDa)

5.3

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 59 - 93 1.8e-07 F-box domain
F-box-like PF12937 62 - 92 1.9e-07 F-box-like
LysM PF01476 129 - 172 3.8e-06 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55000 AT1G55000 AT1G55000
fragaria_vesca FvH4_6g06020
malus_domestica MD04G1204800.v1.1 MD12G1218500.v1.1
prunus_persica Prupe.6G324800_v2.0.a1
pyrus_communis pycom04g18100
rosa_chinensis RchiOBHm_Chr3g0454981
rosa_laevigata RLG00000025396
rosa_multiflora Rmu_sc0001861.1_g000058
rosa_roxburghii Rroxscaffold_6G00424630
rosa_rugosa Rorug03G0003700
rosa_samantha Rh3AG063300 Rh3BG065300 Rh3CG064100 Rh3DG065300
rosa_wichuraiana Rw3G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 1 cut(s) 557
AccII CGCG 2 cut(s) 246, 399
AccIII TCCGGA 1 cut(s) 338
AciI CCGC 7 cut(s) 123, 187, 244, 333, 397, 399, 590
AclWI GGATC 6 cut(s) 205, 518, 560, 573, 770, 783
AcsI RAATTY 2 cut(s) 371, 676
AcyI GRCGYC 1 cut(s) 318
AfaI GTAC 1 cut(s) 752
AfeI AGCGCT 1 cut(s) 458
AfiI CCNNNNNNNGG 2 cut(s) 338, 817
AgsI TTSAA 3 cut(s) 295, 463, 676
AhdI GACNNNNNGTC 1 cut(s) 103
AjnI CCWGG 2 cut(s) 165, 248
AluBI AGCT 7 cut(s) 205, 234, 310, 345, 545, 633, 785
AluI AGCT 7 cut(s) 205, 234, 310, 345, 545, 633, 785
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 3 cut(s) 714, 798, 815
AlwI GGATC 6 cut(s) 205, 518, 560, 573, 770, 783
Ama87I CYCGRG 2 cut(s) 365, 493
Aor13HI TCCGGA 1 cut(s) 338
Aor51HI AGCGCT 1 cut(s) 458
AoxI GGCC 3 cut(s) 162, 168, 831
ApeKI GCWGC 2 cut(s) 234, 785
ApoI RAATTY 2 cut(s) 371, 676
AspLEI GCGC 2 cut(s) 248, 459
AspS9I GGNCC 3 cut(s) 163, 611, 808
AsuHPI GGTGA 1 cut(s) 454
AsuNHI GCTAGC 1 cut(s) 413
AvaI CYCGRG 2 cut(s) 365, 493
AvaII GGWCC 2 cut(s) 611, 808
AxyI CCTNAGG 1 cut(s) 812
BamHI GGATCC 2 cut(s) 565, 775
BanII GRGCYC 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 2 cut(s) 221, 772
BccI CCATC 4 cut(s) 386, 439, 602, 764
BceAI ACGGC 3 cut(s) 159, 286, 407
BciT130I CCWGG 2 cut(s) 167, 250
BcoDI GTCTC 3 cut(s) 714, 798, 815
BfaI CTAG 3 cut(s) 95, 414, 686
BfoI RGCGCY 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 557
BisI GCNGC 5 cut(s) 124, 235, 244, 400, 786
BlsI GCNGC 5 cut(s) 125, 236, 245, 401, 787
Bme1390I CCNGG 2 cut(s) 167, 250
Bme18I GGWCC 2 cut(s) 611, 808
BmeRI GACNNNNNGTC 1 cut(s) 103
BmeT110I CYCGRG 2 cut(s) 365, 493
BmgT120I GGNCC 3 cut(s) 163, 611, 808
BmiI GGNNCC 2 cut(s) 567, 777
BmrFI CCNGG 2 cut(s) 167, 250
BmsI GCATC 1 cut(s) 727
BmtI GCTAGC 1 cut(s) 417
BpmI CTGGAG 2 cut(s) 214, 370
BpuEI CTTGAG 2 cut(s) 296, 725
BsaBI GATNNNNATC 1 cut(s) 774
BsaHI GRCGYC 1 cut(s) 318
BsaJI CCNNGG 4 cut(s) 165, 302, 364, 397
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 817
Bse21I CCTNAGG 1 cut(s) 812
Bse3DI GCAATG 1 cut(s) 762
Bse8I GATNNNNATC 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 338
BseBI CCWGG 2 cut(s) 167, 250
BseDI CCNNGG 4 cut(s) 165, 302, 364, 397
BseGI GGATG 2 cut(s) 107, 610
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 2 cut(s) 338, 817
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 3 cut(s) 64, 704, 809
BseRI GAGGAG 4 cut(s) 58, 103, 106, 730
BseXI GCAGC 2 cut(s) 221, 772
Bsh1236I CGCG 2 cut(s) 246, 399
BshFI GGCC 3 cut(s) 164, 170, 833
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 2 cut(s) 365, 493
BsiSI CCGG 2 cut(s) 120, 339
BslI CCNNNNNNNGG 2 cut(s) 338, 817
BsmAI GTCTC 3 cut(s) 714, 798, 815
BsnI GGCC 3 cut(s) 164, 170, 833
BsoBI CYCGRG 2 cut(s) 365, 493
Bsp1286I GDGCHC 1 cut(s) 635
Bsp13I TCCGGA 1 cut(s) 338
Bsp143I GATC 6 cut(s) 210, 268, 276, 523, 565, 775
BspACI CCGC 7 cut(s) 123, 187, 244, 333, 397, 399, 590
BspANI GGCC 3 cut(s) 164, 170, 833
BspCNI CTCAG 3 cut(s) 63, 705, 808
BspEI TCCGGA 1 cut(s) 338
BspFNI CGCG 2 cut(s) 246, 399
BspLI GGNNCC 2 cut(s) 567, 777
BspMI ACCTGC 1 cut(s) 557
BspOI GCTAGC 1 cut(s) 417
BspPI GGATC 6 cut(s) 205, 518, 560, 573, 770, 783
BsrDI GCAATG 1 cut(s) 762
BssECI CCNNGG 4 cut(s) 165, 302, 364, 397
BssMI GATC 6 cut(s) 210, 268, 276, 523, 565, 775
BssNI GRCGYC 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 167, 250
Bst6I CTCTTC 2 cut(s) 647, 689
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 6 cut(s) 172, 226, 397, 415, 479, 725
BstDEI CTNAG 4 cut(s) 50, 713, 795, 812
BstDSI CCRYGG 2 cut(s) 302, 397
BstF5I GGATG 2 cut(s) 107, 610
BstFNI CGCG 2 cut(s) 246, 399
BstH2I RGCGCY 1 cut(s) 460
BstHHI GCGC 2 cut(s) 248, 459
BstKTI GATC 6 cut(s) 213, 271, 279, 526, 568, 778
BstMAI GTCTC 3 cut(s) 714, 798, 815
BstMBI GATC 6 cut(s) 210, 268, 276, 523, 565, 775
BstMWI GCNNNNNNNGC 7 cut(s) 234, 240, 243, 307, 405, 414, 419
BstNI CCWGG 2 cut(s) 167, 250
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 2 cut(s) 165, 248
BstUI CGCG 2 cut(s) 246, 399
BstV1I GCAGC 2 cut(s) 221, 772
BstX2I RGATCY 2 cut(s) 565, 775
BstYI RGATCY 2 cut(s) 565, 775
Bsu36I CCTNAGG 1 cut(s) 812
BsuRI GGCC 3 cut(s) 164, 170, 833
BtgI CCRYGG 2 cut(s) 302, 397
BtsCI GGATG 2 cut(s) 107, 610
BtsI GCAGTG 2 cut(s) 673, 741
BtsIMutI CAGTG 2 cut(s) 673, 741
BveI ACCTGC 1 cut(s) 557
Cac8I GCNNGC 6 cut(s) 172, 226, 397, 415, 479, 725
CfoI GCGC 2 cut(s) 248, 459
Cfr13I GGNCC 3 cut(s) 163, 611, 808
Cfr42I CCGCGG 1 cut(s) 400
CseI GACGC 2 cut(s) 226, 397
Csp6I GTAC 1 cut(s) 751
CviAII CATG 3 cut(s) 469, 482, 724
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 4 cut(s) 50, 713, 795, 812
DpnI GATC 6 cut(s) 212, 270, 278, 525, 567, 777
DpnII GATC 6 cut(s) 210, 268, 276, 523, 565, 775
DriI GACNNNNNGTC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 647, 689
Eam1105I GACNNNNNGTC 1 cut(s) 103
EarI CTCTTC 2 cut(s) 647, 689
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 635
Eco47I GGWCC 2 cut(s) 611, 808
Eco47III AGCGCT 1 cut(s) 458
Eco53kI GAGCTC 1 cut(s) 633
Eco81I CCTNAGG 1 cut(s) 812
Eco88I CYCGRG 2 cut(s) 365, 493
EcoICRI GAGCTC 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 808
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 2 cut(s) 165, 248
EcoT38I GRGCYC 1 cut(s) 635
FaeI CATG 3 cut(s) 472, 485, 727
FaiI YATR 6 cut(s) 137, 452, 470, 483, 555, 725
FatI CATG 3 cut(s) 468, 481, 723
FauI CCCGC 2 cut(s) 340, 404
Fnu4HI GCNGC 5 cut(s) 124, 235, 244, 400, 786
FokI GGATG 2 cut(s) 94, 617
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 5 cut(s) 124, 235, 244, 400, 786
FspBI CTAG 3 cut(s) 95, 414, 686
GlaI GCGC 2 cut(s) 247, 458
GluI GCNGC 5 cut(s) 124, 235, 244, 400, 786
GsuI CTGGAG 2 cut(s) 214, 370
HaeII RGCGCY 1 cut(s) 460
HaeIII GGCC 3 cut(s) 164, 170, 833
HapII CCGG 2 cut(s) 120, 339
HgaI GACGC 2 cut(s) 226, 397
HhaI GCGC 2 cut(s) 248, 459
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 3 cut(s) 472, 485, 727
Hin6I GCGC 2 cut(s) 246, 457
HinP1I GCGC 2 cut(s) 246, 457
HindIII AAGCTT 2 cut(s) 203, 343
HinfI GANTC 5 cut(s) 101, 486, 511, 707, 823
HpaII CCGG 2 cut(s) 120, 339
HphI GGTGA 1 cut(s) 454
Hpy188I TCNGA 7 cut(s) 210, 268, 326, 516, 682, 714, 780
Hpy188III TCNNGA 8 cut(s) 199, 272, 339, 349, 367, 527, 614, 704
Hpy99I CGWCG 8 cut(s) 20, 32, 35, 263, 284, 323, 326, 413
HpyAV CCTTC 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 318, 729
HpyCH4V TGCA 2 cut(s) 727, 788
HpyF10VI GCNNNNNNNGC 7 cut(s) 234, 240, 243, 307, 405, 414, 419
HpyF3I CTNAG 4 cut(s) 50, 713, 795, 812
HpySE526I ACGT 2 cut(s) 318, 729
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 3 cut(s) 472, 485, 727
HspAI GCGC 2 cut(s) 246, 457
Kpn2I TCCGGA 1 cut(s) 338
KspI CCGCGG 1 cut(s) 400
Kzo9I GATC 6 cut(s) 210, 268, 276, 523, 565, 775
LmnI GCTCC 2 cut(s) 233, 542
Lsp1109I GCAGC 2 cut(s) 221, 772
LweI GCATC 1 cut(s) 727
MaeI CTAG 3 cut(s) 95, 414, 686
MaeII ACGT 2 cut(s) 318, 729
MaeIII GTNAC 1 cut(s) 176
MalI GATC 6 cut(s) 212, 270, 278, 525, 567, 777
MboI GATC 6 cut(s) 210, 268, 276, 523, 565, 775
MboII GAAGA 4 cut(s) 32, 187, 664, 706
MflI RGATCY 2 cut(s) 565, 775
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 3 cut(s) 371, 390, 676
MlyI GAGTC 3 cut(s) 95, 716, 817
MmeI TCCRAC 1 cut(s) 304
MroI TCCGGA 1 cut(s) 338
MseI TTAA 1 cut(s) 841
MslI CAYNNNNRTG 1 cut(s) 732
MspA1I CMGCKG 2 cut(s) 234, 399
MspI CCGG 2 cut(s) 120, 339
MspR9I CCNGG 2 cut(s) 167, 250
MvaI CCWGG 2 cut(s) 167, 250
MvnI CGCG 2 cut(s) 246, 399
MwoI GCNNNNNNNGC 7 cut(s) 234, 240, 243, 307, 405, 414, 419
NdeII GATC 6 cut(s) 210, 268, 276, 523, 565, 775
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 3 cut(s) 472, 485, 727
NlaIV GGNNCC 2 cut(s) 567, 777
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 176
NspI RCATGY 1 cut(s) 727
PaeI GCATGC 1 cut(s) 727
PaeR7I CTCGAG 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 2 cut(s) 486, 511
PflFI GACNNNGTC 1 cut(s) 320
PkrI GCNGC 5 cut(s) 125, 236, 245, 401, 787
PleI GAGTC 3 cut(s) 95, 715, 817
PpsI GAGTC 3 cut(s) 95, 715, 817
PpuMI RGGWCCY 1 cut(s) 808
Psp124BI GAGCTC 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 808
Psp6I CCWGG 2 cut(s) 165, 248
PspGI CCWGG 2 cut(s) 165, 248
PspN4I GGNNCC 2 cut(s) 567, 777
PspPI GGNCC 3 cut(s) 163, 611, 808
PspPPI RGGWCCY 1 cut(s) 808
PspXI VCTCGAGB 1 cut(s) 493
PsuI RGATCY 2 cut(s) 565, 775
PsyI GACNNNGTC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 234
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
RseI CAYNNNNRTG 1 cut(s) 732
SacI GAGCTC 1 cut(s) 635
SacII CCGCGG 1 cut(s) 400
SaqAI TTAA 1 cut(s) 841
SatI GCNGC 5 cut(s) 124, 235, 244, 400, 786
Sau3AI GATC 6 cut(s) 210, 268, 276, 523, 565, 775
Sau96I GGNCC 3 cut(s) 163, 611, 808
SchI GAGTC 3 cut(s) 95, 716, 817
ScrFI CCNGG 2 cut(s) 167, 250
SduI GDGCHC 1 cut(s) 635
SfaNI GCATC 1 cut(s) 727
Sfr274I CTCGAG 1 cut(s) 493
Sfr303I CCGCGG 1 cut(s) 400
SgrBI CCGCGG 1 cut(s) 400
SinI GGWCC 2 cut(s) 611, 808
SlaI CTCGAG 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 3 cut(s) 311, 493, 704
SmoI CTYRAG 3 cut(s) 311, 493, 704
SphI GCATGC 1 cut(s) 727
Sse9I AATT 3 cut(s) 371, 390, 676
SsiI CCGC 7 cut(s) 123, 187, 244, 333, 397, 399, 590
SspMI CTAG 3 cut(s) 95, 414, 686
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 165, 248
TaiI ACGT 2 cut(s) 321, 732
TaqI TCGA 3 cut(s) 198, 494, 558
TasI AATT 3 cut(s) 371, 390, 676
TatI WGTACW 1 cut(s) 750
TauI GCSGC 3 cut(s) 126, 246, 402
TfiI GAWTC 2 cut(s) 486, 511
Tru1I TTAA 1 cut(s) 841
Tru9I TTAA 1 cut(s) 841
TscAI CASTG 2 cut(s) 673, 748
TseFI GTSAC 1 cut(s) 176
TseI GCWGC 2 cut(s) 234, 785
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 2 cut(s) 247, 424
TspRI CASTG 2 cut(s) 673, 748
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 611, 808
XapI RAATTY 2 cut(s) 371, 676
XceI RCATGY 1 cut(s) 727
XhoI CTCGAG 1 cut(s) 493
XspI CTAG 3 cut(s) 95, 414, 686
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.