FvH4_6g06020

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013410
Physical Location & Seq
Forward (+)
3436211 .. 3437478
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06020.t1

Sequence Viewer

Length: 807 bp
ATGGGTTGCTGCGGCGACGAAGAAAACGACGACGATCTCAGCTCCGCCGCCACCACCGAAACCCTACACGACACGTCCTCCTCCTCAGACTCCACCACCTTATCTCCGATGAACTCTCACTTCTCCGCCCTGGCTTGCCGCGACACCCTCCGCCTCATCTTCGAGAAGCTTCCGATCCCCGACCTCGCTCGCTCTAGCTGCGTCTGCCGCGCGTGGAACTCCGTCGCCTCTGATCAAGAGATCGTCGCCAACGCCTTCAAATCGCCGTGGAAGCTGAAGGACGTCGTCGGGAAACCCGCCTCCGGAAGCTTCTGGAGAGATAACAGCATCGGGAAATTCGCCATCTCTCACCGAATTTCCCGCGGCGATAGCGTCGCTAGCCTCGCCGTCAAGTATTCCGTTCAGGTGGTGGATGTAAAGCGCTTGAATAACATGATGAGTGAGCATGGGATATACTCGAGGGAGAGGTTGTTGATTCCAATAAGCGATCCGGAAATGCTTGTGGGAGCTACCTGCTATGTTGAGGTGGATCCCTGTGCTAAGAGAGAGGTTGCAGTGTTGTATTTGGAAGATGGTCCTGACCAGAAAGCAATCGACTCTTGCACTTTGTCGCAGAAGAATGCTGAAAGCAGTGGGGCGAATTCTGAACTAGGCAAGAAGAGGGTTCTTGAGTCTTTGAGGAGAAGCATGCAGGTTGATGATGCCACTGCACTGTATTACTTGTCCATTGCTGATGGGGATCCGAGAGCTGCATTGTCTCAATTCTCGCAGGACCTTAGATGGGAGAGTCATTCGGCTTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LysM

Protein Analysis

269

Amino Acids

29.31

Weight (kDa)

5.11

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 47 - 81 1.7e-07 F-box domain
F-box-like PF12937 50 - 80 1.8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55000 AT1G55000 AT1G55000
fragaria_vesca FvH4_6g06020
malus_domestica MD04G1204800.v1.1 MD12G1218500.v1.1
prunus_persica Prupe.6G324800_v2.0.a1
pyrus_communis pycom04g18100
rosa_chinensis RchiOBHm_Chr3g0454981
rosa_laevigata RLG00000025396
rosa_multiflora Rmu_sc0001861.1_g000058
rosa_roxburghii Rroxscaffold_6G00424630
rosa_rugosa Rorug03G0003700
rosa_samantha Rh3AG063300 Rh3BG065300 Rh3CG064100 Rh3DG065300
rosa_wichuraiana Rw3G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 285
Acc36I ACCTGC 2 cut(s) 521, 682
AccII CGCG 4 cut(s) 141, 210, 212, 363
AccIII TCCGGA 2 cut(s) 302, 490
AclWI GGATC 6 cut(s) 169, 482, 524, 537, 734, 747
AcsI RAATTY 3 cut(s) 335, 354, 640
AcuI CTGAAG 1 cut(s) 296
AcyI GRCGYC 1 cut(s) 282
AfeI AGCGCT 1 cut(s) 422
AfiI CCNNNNNNNGG 2 cut(s) 302, 781
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 2 cut(s) 259, 427
AjiI CACGTC 1 cut(s) 75
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 7 cut(s) 42, 169, 198, 274, 309, 509, 749
AluI AGCT 7 cut(s) 42, 169, 198, 274, 309, 509, 749
Alw26I GTCTC 1 cut(s) 762
AlwI GGATC 6 cut(s) 169, 482, 524, 537, 734, 747
Ama87I CYCGRG 1 cut(s) 457
Aor13HI TCCGGA 2 cut(s) 302, 490
Aor51HI AGCGCT 1 cut(s) 422
ApeKI GCWGC 3 cut(s) 9, 198, 749
ApoI RAATTY 3 cut(s) 335, 354, 640
AspLEI GCGC 2 cut(s) 212, 423
AspS9I GGNCC 2 cut(s) 575, 772
AsuHPI GGTGA 1 cut(s) 341
AsuNHI GCTAGC 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 457
AvaII GGWCC 2 cut(s) 575, 772
BamHI GGATCC 2 cut(s) 529, 739
BbvI GCAGC 2 cut(s) 185, 736
BccI CCATC 4 cut(s) 350, 566, 728, 774
BceAI ACGGC 2 cut(s) 250, 371
BciT130I CCWGG 1 cut(s) 131
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 3 cut(s) 195, 378, 650
BfoI RGCGCY 1 cut(s) 424
BfuAI ACCTGC 2 cut(s) 521, 682
BisI GCNGC 8 cut(s) 10, 13, 48, 139, 199, 208, 364, 750
BlsI GCNGC 8 cut(s) 11, 14, 49, 140, 200, 209, 365, 751
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 2 cut(s) 575, 772
BmeT110I CYCGRG 1 cut(s) 457
BmgBI CACGTC 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 575, 772
BmiI GGNNCC 2 cut(s) 531, 741
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 2 cut(s) 336, 691
BmtI GCTAGC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 689
BsaBI GATNNNNATC 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 3 cut(s) 129, 266, 361
BsaWI WCCGGW 2 cut(s) 302, 490
BsaXI ACNNNNNCTCC 6 cut(s) 62, 88, 92, 118, 455, 485
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 781
Bse3DI GCAATG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 738
BseAI TCCGGA 2 cut(s) 302, 490
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 3 cut(s) 129, 266, 361
BseGI GGATG 1 cut(s) 418
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 2 cut(s) 302, 781
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 2 cut(s) 52, 99
BseRI GAGGAG 3 cut(s) 70, 73, 694
BseXI GCAGC 2 cut(s) 185, 736
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 4 cut(s) 141, 210, 212, 363
BsiHKCI CYCGRG 1 cut(s) 457
BsiSI CCGG 2 cut(s) 303, 491
BslI CCNNNNNNNGG 2 cut(s) 302, 781
BsmAI GTCTC 1 cut(s) 762
BsmI GAATGC 1 cut(s) 625
BsoBI CYCGRG 1 cut(s) 457
Bsp13I TCCGGA 2 cut(s) 302, 490
Bsp143I GATC 7 cut(s) 34, 174, 232, 240, 487, 529, 739
BspCNI CTCAG 2 cut(s) 51, 98
BspEI TCCGGA 2 cut(s) 302, 490
BspFNI CGCG 4 cut(s) 141, 210, 212, 363
BspLI GGNNCC 2 cut(s) 531, 741
BspMI ACCTGC 2 cut(s) 521, 682
BspOI GCTAGC 1 cut(s) 381
BspPI GGATC 6 cut(s) 169, 482, 524, 537, 734, 747
BsrDI GCAATG 1 cut(s) 726
BssECI CCNNGG 3 cut(s) 129, 266, 361
BssMI GATC 7 cut(s) 34, 174, 232, 240, 487, 529, 739
BssNI GRCGYC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 714
Bst6I CTCTTC 1 cut(s) 653
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 4 cut(s) 136, 190, 379, 689
BstDEI CTNAG 4 cut(s) 38, 85, 540, 776
BstDSI CCRYGG 2 cut(s) 266, 361
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 4 cut(s) 141, 210, 212, 363
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 2 cut(s) 212, 423
BstKTI GATC 7 cut(s) 37, 177, 235, 243, 490, 532, 742
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 7 cut(s) 34, 174, 232, 240, 487, 529, 739
BstMWI GCNNNNNNNGC 7 cut(s) 198, 204, 207, 271, 369, 378, 383
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 1 cut(s) 129
BstUI CGCG 4 cut(s) 141, 210, 212, 363
BstV1I GCAGC 2 cut(s) 185, 736
BstX2I RGATCY 2 cut(s) 529, 739
BstYI RGATCY 2 cut(s) 529, 739
BtgI CCRYGG 2 cut(s) 266, 361
BtrI CACGTC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 3 cut(s) 561, 637, 705
BtsIMutI CAGTG 4 cut(s) 561, 637, 705, 710
BveI ACCTGC 2 cut(s) 521, 682
Cac8I GCNNGC 4 cut(s) 136, 190, 379, 689
CfoI GCGC 2 cut(s) 212, 423
Cfr13I GGNCC 2 cut(s) 575, 772
Cfr42I CCGCGG 1 cut(s) 364
CseI GACGC 2 cut(s) 190, 361
CviAII CATG 3 cut(s) 433, 446, 688
DdeI CTNAG 4 cut(s) 38, 85, 540, 776
DpnI GATC 7 cut(s) 36, 176, 234, 242, 489, 531, 741
DpnII GATC 7 cut(s) 34, 174, 232, 240, 487, 529, 739
Eam1104I CTCTTC 1 cut(s) 653
EarI CTCTTC 1 cut(s) 653
EciI GGCGGA 3 cut(s) 34, 115, 140
Eco47I GGWCC 2 cut(s) 575, 772
Eco47III AGCGCT 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 457
EcoO109I RGGNCCY 1 cut(s) 772
EcoRI GAATTC 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 129
FaeI CATG 3 cut(s) 436, 449, 691
FaiI YATR 5 cut(s) 434, 447, 454, 519, 689
FatI CATG 3 cut(s) 432, 445, 687
FauI CCCGC 2 cut(s) 304, 368
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 8 cut(s) 10, 13, 48, 139, 199, 208, 364, 750
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 8 cut(s) 10, 13, 48, 139, 199, 208, 364, 750
FspBI CTAG 3 cut(s) 195, 378, 650
GlaI GCGC 2 cut(s) 211, 422
GluI GCNGC 8 cut(s) 10, 13, 48, 139, 199, 208, 364, 750
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 424
HapII CCGG 2 cut(s) 303, 491
HgaI GACGC 2 cut(s) 190, 361
HhaI GCGC 2 cut(s) 212, 423
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 3 cut(s) 436, 449, 691
Hin6I GCGC 2 cut(s) 210, 421
HinP1I GCGC 2 cut(s) 210, 421
HindIII AAGCTT 2 cut(s) 167, 307
HinfI GANTC 5 cut(s) 89, 475, 596, 671, 787
HpaII CCGG 2 cut(s) 303, 491
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 6 cut(s) 88, 108, 174, 232, 646, 744
Hpy188III TCNNGA 9 cut(s) 163, 236, 289, 303, 313, 331, 491, 578, 668
Hpy99I CGWCG 8 cut(s) 20, 32, 35, 227, 248, 287, 290, 377
HpyAV CCTTC 2 cut(s) 265, 271
HpyCH4III ACNGT 1 cut(s) 714
HpyCH4IV ACGT 2 cut(s) 74, 282
HpyCH4V TGCA 5 cut(s) 554, 603, 691, 710, 752
HpyF10VI GCNNNNNNNGC 7 cut(s) 198, 204, 207, 271, 369, 378, 383
HpyF3I CTNAG 4 cut(s) 38, 85, 540, 776
HpySE526I ACGT 2 cut(s) 74, 282
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 3 cut(s) 436, 449, 691
HspAI GCGC 2 cut(s) 210, 421
Kpn2I TCCGGA 2 cut(s) 302, 490
Ksp22I TGATCA 1 cut(s) 232
KspI CCGCGG 1 cut(s) 364
Kzo9I GATC 7 cut(s) 34, 174, 232, 240, 487, 529, 739
LmnI GCTCC 2 cut(s) 47, 506
Lsp1109I GCAGC 2 cut(s) 185, 736
LweI GCATC 2 cut(s) 336, 691
MaeI CTAG 3 cut(s) 195, 378, 650
MaeII ACGT 2 cut(s) 74, 282
MalI GATC 7 cut(s) 36, 176, 234, 242, 489, 531, 741
MboI GATC 7 cut(s) 34, 174, 232, 240, 487, 529, 739
MboII GAAGA 5 cut(s) 32, 151, 581, 628, 670
MflI RGATCY 2 cut(s) 529, 739
MluCI AATT 4 cut(s) 335, 354, 640, 761
MlyI GAGTC 4 cut(s) 83, 590, 680, 796
MroI TCCGGA 2 cut(s) 302, 490
MseI TTAA 1 cut(s) 805
MspA1I CMGCKG 1 cut(s) 363
MspI CCGG 2 cut(s) 303, 491
MspR9I CCNGG 1 cut(s) 131
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 131
MvnI CGCG 4 cut(s) 141, 210, 212, 363
MwoI GCNNNNNNNGC 7 cut(s) 198, 204, 207, 271, 369, 378, 383
NdeII GATC 7 cut(s) 34, 174, 232, 240, 487, 529, 739
NheI GCTAGC 1 cut(s) 377
NlaIII CATG 3 cut(s) 436, 449, 691
NlaIV GGNNCC 2 cut(s) 531, 741
NspI RCATGY 1 cut(s) 691
PaeI GCATGC 1 cut(s) 691
PaeR7I CTCGAG 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PctI GAATGC 1 cut(s) 625
PfeI GAWTC 1 cut(s) 475
PflFI GACNNNGTC 1 cut(s) 284
PkrI GCNGC 8 cut(s) 11, 14, 49, 140, 200, 209, 365, 751
PleI GAGTC 4 cut(s) 83, 590, 679, 795
PpsI GAGTC 4 cut(s) 83, 590, 679, 795
PpuMI RGGWCCY 1 cut(s) 772
Psp5II RGGWCCY 1 cut(s) 772
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 531, 741
PspPI GGNCC 2 cut(s) 575, 772
PspPPI RGGWCCY 1 cut(s) 772
PspXI VCTCGAGB 1 cut(s) 457
PsuI RGATCY 2 cut(s) 529, 739
PsyI GACNNNGTC 1 cut(s) 284
SacII CCGCGG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 805
SatI GCNGC 8 cut(s) 10, 13, 48, 139, 199, 208, 364, 750
Sau3AI GATC 7 cut(s) 34, 174, 232, 240, 487, 529, 739
Sau96I GGNCC 2 cut(s) 575, 772
SchI GAGTC 4 cut(s) 83, 590, 680, 796
ScrFI CCNGG 1 cut(s) 131
SfaNI GCATC 2 cut(s) 336, 691
Sfr274I CTCGAG 1 cut(s) 457
Sfr303I CCGCGG 1 cut(s) 364
SgrBI CCGCGG 1 cut(s) 364
SinI GGWCC 2 cut(s) 575, 772
SlaI CTCGAG 1 cut(s) 457
SmlI CTYRAG 2 cut(s) 457, 668
SmoI CTYRAG 2 cut(s) 457, 668
SphI GCATGC 1 cut(s) 691
Sse9I AATT 4 cut(s) 335, 354, 640, 761
SspMI CTAG 3 cut(s) 195, 378, 650
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 714
TaiI ACGT 2 cut(s) 77, 285
TaqI TCGA 3 cut(s) 162, 458, 594
TasI AATT 4 cut(s) 335, 354, 640, 761
TauI GCSGC 5 cut(s) 15, 50, 141, 210, 366
TfiI GAWTC 1 cut(s) 475
Tru1I TTAA 1 cut(s) 805
Tru9I TTAA 1 cut(s) 805
TscAI CASTG 4 cut(s) 561, 637, 712, 717
TseI GCWGC 3 cut(s) 9, 198, 749
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 2 cut(s) 211, 388
TspRI CASTG 4 cut(s) 561, 637, 712, 717
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 575, 772
XapI RAATTY 3 cut(s) 335, 354, 640
XceI RCATGY 1 cut(s) 691
XhoI CTCGAG 1 cut(s) 457
XspI CTAG 3 cut(s) 195, 378, 650
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.