Prupe.6G324800_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013410
Physical Location & Seq
Reverse (-)
28609864 .. 28611293
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G324800.1

Sequence Viewer

Length: 798 bp
ATGGGTTGCTGCGGGGACGAAGAAAACGACGACGACATCCTCAACCCTCTCAACCCCACCACCACCACCGAAATCCTAGACTTCTCCGACTCCACCATATCTCCGATGAACTCTCACTTCTCGGCCTTGACTTGCCGCGACACCCTCCGCCTCATCTTCGAGAAGCTCCCGATTCCCGACCTTGCTCGCTCCAGCTGCGTCTGCCGAGTCTGGAACTCGGTCGCCTCCGATCAGGAGATCGTCACCAGAGCCTTCAAAGCCCCTTGGAATCTGAAGCATATCATCGGAAAGCCAGCGTCTGGAAACTTCTGGAGAGACAATTCTCTCGGAAAATTCGCCATCTCGCACCGGATTGTCCGTGGCGACAGCATCGCCAGTCTCGCCGTCAAGTATTCTGTTCAGGTGATGGACATAAAGCGTTTGAACAACACGATGAGCGAGCACGGAATATACTCTCGTGAGAGATTGCTGATCCCGATAAGCAATCCGGAGATGCTTTTGCAGGCTACTTGCTATGTTGAAGTGGATACTTGTGCTAAGAGAGAAGTGGCTGTGCTGTATTTGGAAGGCGGCCCTGAGCTCCACAAAACGACCAGCAATGGCAGCTCAAGCACGTCTTCTTGCTCTGCAACTGATTTGCAGAGTAAGAAGCGGGTGATTGAGTCACTGAGGAGAAGCATGCAAATTGATGATGCCACTGCTCACTACTACTTGACCATTGCTGATGGTGATCCAAGAGCTGCACTCTCTCAGTTCTCCCAGGACCTCAGATGGGAAAACCACCTGGGCTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LysM

Protein Analysis

266

Amino Acids

29.52

Weight (kDa)

5.81

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55000 AT1G55000 AT1G55000
fragaria_vesca FvH4_6g06020
malus_domestica MD04G1204800.v1.1 MD12G1218500.v1.1
prunus_persica Prupe.6G324800_v2.0.a1
pyrus_communis pycom04g18100
rosa_chinensis RchiOBHm_Chr3g0454981
rosa_laevigata RLG00000025396
rosa_multiflora Rmu_sc0001861.1_g000058
rosa_roxburghii Rroxscaffold_6G00424630
rosa_rugosa Rorug03G0003700
rosa_samantha Rh3AG063300 Rh3BG065300 Rh3CG064100 Rh3DG065300
rosa_wichuraiana Rw3G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 299
AccII CGCG 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 5 cut(s) 12, 136, 148, 570, 652
AclWI GGATC 2 cut(s) 466, 725
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 299, 772
AgsI TTSAA 3 cut(s) 256, 424, 521
AjiI CACGTC 1 cut(s) 615
AjnI CCWGG 2 cut(s) 759, 783
AluBI AGCT 5 cut(s) 166, 195, 580, 606, 740
AluI AGCT 5 cut(s) 166, 195, 580, 606, 740
Alw21I GWGCWC 2 cut(s) 444, 582
Alw26I GTCTC 2 cut(s) 309, 383
AlwI GGATC 2 cut(s) 466, 725
AlwNI CAGNNNCTG 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 2 cut(s) 123, 571
ApeKI GCWGC 4 cut(s) 9, 195, 603, 740
ApoI RAATTY 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 572, 763
AsuHPI GGTGA 4 cut(s) 235, 415, 667, 740
AvaII GGWCC 1 cut(s) 763
BanII GRGCYC 1 cut(s) 582
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 609
Bbv12I GWGCWC 2 cut(s) 444, 582
BbvI GCAGC 3 cut(s) 182, 615, 727
BccI CCATC 4 cut(s) 347, 400, 719, 765
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 2 cut(s) 761, 785
BciVI GTATCC 1 cut(s) 520
BcoDI GTCTC 2 cut(s) 309, 383
BfaI CTAG 1 cut(s) 77
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 6 cut(s) 10, 136, 196, 571, 604, 741
BlsI GCNGC 6 cut(s) 11, 137, 197, 572, 605, 742
Bme1390I CCNGG 2 cut(s) 761, 785
Bme18I GGWCC 1 cut(s) 763
BmgBI CACGTC 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 572, 763
BmrFI CCNGG 2 cut(s) 761, 785
BmsI GCATC 3 cut(s) 378, 483, 682
BpiI GAAGAC 1 cut(s) 609
BplI GAGNNNNNCTC 2 cut(s) 729, 761
BpmI CTGGAG 2 cut(s) 175, 331
Bpu10I CCTNAGC 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 592
BsaBI GATNNNNATC 1 cut(s) 729
BsaJI CCNNGG 4 cut(s) 263, 358, 759, 784
BsaWI WCCGGW 2 cut(s) 348, 487
BsaXI ACNNNNNCTCC 2 cut(s) 85, 115
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 772
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 2 cut(s) 604, 717
Bse8I GATNNNNATC 1 cut(s) 729
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 2 cut(s) 761, 785
BseDI CCNNGG 4 cut(s) 263, 358, 759, 784
BseGI GGATG 1 cut(s) 36
BseJI GATNNNNATC 1 cut(s) 729
BseLI CCNNNNNNNGG 2 cut(s) 299, 772
BseMI GCAATG 2 cut(s) 604, 717
BseMII CTCAG 4 cut(s) 567, 659, 764, 781
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 685
BseXI GCAGC 3 cut(s) 182, 615, 727
BsgI GTGCAG 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 138
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 2 cut(s) 125, 573
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 444, 582
BsiSI CCGG 2 cut(s) 349, 488
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 299, 772
BsmAI GTCTC 2 cut(s) 309, 383
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 2 cut(s) 125, 573
Bsp1286I GDGCHC 2 cut(s) 444, 582
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 4 cut(s) 229, 237, 471, 730
BspACI CCGC 5 cut(s) 12, 136, 148, 570, 652
BspANI GGCC 2 cut(s) 125, 573
BspCNI CTCAG 4 cut(s) 568, 660, 763, 780
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 138
BspPI GGATC 2 cut(s) 466, 725
BsrDI GCAATG 2 cut(s) 604, 717
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 4 cut(s) 263, 358, 759, 784
BssMI GATC 4 cut(s) 229, 237, 471, 730
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 761, 785
BstC8I GCNNGC 5 cut(s) 187, 294, 440, 504, 680
BstDEI CTNAG 5 cut(s) 537, 576, 668, 750, 767
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 4 cut(s) 232, 240, 474, 733
BstMAI GTCTC 2 cut(s) 309, 383
BstMBI GATC 4 cut(s) 229, 237, 471, 730
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 6 cut(s) 195, 201, 257, 380, 603, 609
BstNI CCWGG 2 cut(s) 761, 785
BstNSI RCATGY 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 759, 783
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 182, 615, 727
BstV2I GAAGAC 1 cut(s) 609
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 2 cut(s) 125, 573
BtgI CCRYGG 1 cut(s) 358
BtgZI GCGATG 1 cut(s) 355
BtrI CACGTC 1 cut(s) 615
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 2 cut(s) 665, 696
Cac8I GCNNGC 5 cut(s) 187, 294, 440, 504, 680
CaiI CAGNNNCTG 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 572, 763
CseI GACGC 2 cut(s) 187, 285
CviAII CATG 1 cut(s) 679
DdeI CTNAG 5 cut(s) 537, 576, 668, 750, 767
DpnI GATC 4 cut(s) 231, 239, 473, 732
DpnII GATC 4 cut(s) 229, 237, 471, 730
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 293
EcoICRI GAGCTC 1 cut(s) 580
EcoO109I RGGNCCY 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 759, 783
EcoT14I CCWWGG 1 cut(s) 263
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 1 cut(s) 682
FaiI YATR 6 cut(s) 98, 279, 413, 451, 516, 680
FalI AAGNNNNNCTT 2 cut(s) 601, 633
FaqI GGGAC 1 cut(s) 29
FatI CATG 1 cut(s) 678
FauI CCCGC 2 cut(s) 5, 645
Fnu4HI GCNGC 6 cut(s) 10, 136, 196, 571, 604, 741
FokI GGATG 1 cut(s) 23
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 6 cut(s) 10, 136, 196, 571, 604, 741
FspBI CTAG 1 cut(s) 77
GluI GCNGC 6 cut(s) 10, 136, 196, 571, 604, 741
GsuI CTGGAG 2 cut(s) 175, 331
HaeIII GGCC 2 cut(s) 125, 573
HapII CCGG 2 cut(s) 349, 488
HgaI GACGC 2 cut(s) 187, 285
Hin1II CATG 1 cut(s) 682
HinfI GANTC 5 cut(s) 89, 172, 207, 268, 662
HpaII CCGG 2 cut(s) 349, 488
HphI GGTGA 4 cut(s) 235, 415, 667, 740
Hpy188I TCNGA 7 cut(s) 88, 105, 229, 273, 287, 329, 770
Hpy99I CGWCG 2 cut(s) 32, 35
HpyAV CCTTC 2 cut(s) 262, 560
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 5 cut(s) 502, 629, 640, 682, 743
HpyF10VI GCNNNNNNNGC 6 cut(s) 195, 201, 257, 380, 603, 609
HpyF3I CTNAG 5 cut(s) 537, 576, 668, 750, 767
HpySE526I ACGT 1 cut(s) 614
Hsp92II CATG 1 cut(s) 682
Kpn2I TCCGGA 1 cut(s) 487
Kzo9I GATC 4 cut(s) 229, 237, 471, 730
LmnI GCTCC 3 cut(s) 171, 194, 585
Lsp1109I GCAGC 3 cut(s) 182, 615, 727
LweI GCATC 3 cut(s) 378, 483, 682
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 2 cut(s) 241, 663
MalI GATC 4 cut(s) 231, 239, 473, 732
MboI GATC 4 cut(s) 229, 237, 471, 730
MboII GAAGA 3 cut(s) 32, 148, 609
MhlI GDGCHC 2 cut(s) 444, 582
MluCI AATT 3 cut(s) 319, 332, 684
MlyI GAGTC 3 cut(s) 83, 216, 671
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 7 cut(s) 50, 57, 155, 161, 235, 663, 776
MroI TCCGGA 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 2 cut(s) 349, 488
MspR9I CCNGG 2 cut(s) 761, 785
MvaI CCWGG 2 cut(s) 761, 785
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 6 cut(s) 195, 201, 257, 380, 603, 609
NdeII GATC 4 cut(s) 229, 237, 471, 730
NlaIII CATG 1 cut(s) 682
NmeAIII GCCGAG 2 cut(s) 101, 230
NmuCI GTSAC 2 cut(s) 241, 663
NspI RCATGY 1 cut(s) 682
PaeI GCATGC 1 cut(s) 682
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PfeI GAWTC 2 cut(s) 172, 268
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 6 cut(s) 11, 137, 197, 572, 605, 742
PleI GAGTC 3 cut(s) 83, 215, 670
PpsI GAGTC 3 cut(s) 83, 215, 670
PpuMI RGGWCCY 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 582
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 759, 783
PspGI CCWGG 2 cut(s) 759, 783
PspPI GGNCC 2 cut(s) 572, 763
PspPPI RGGWCCY 1 cut(s) 763
PstNI CAGNNNCTG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 195
SacI GAGCTC 1 cut(s) 582
SatI GCNGC 6 cut(s) 10, 136, 196, 571, 604, 741
Sau3AI GATC 4 cut(s) 229, 237, 471, 730
Sau96I GGNCC 2 cut(s) 572, 763
SchI GAGTC 3 cut(s) 83, 216, 671
ScrFI CCNGG 2 cut(s) 761, 785
SduI GDGCHC 2 cut(s) 444, 582
SfaNI GCATC 3 cut(s) 378, 483, 682
SinI GGWCC 1 cut(s) 763
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
SphI GCATGC 1 cut(s) 682
Sse9I AATT 3 cut(s) 319, 332, 684
SsiI CCGC 5 cut(s) 12, 136, 148, 570, 652
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 759, 783
StyI CCWWGG 1 cut(s) 263
TaiI ACGT 1 cut(s) 617
TaqI TCGA 1 cut(s) 159
TaqII GACCGA 1 cut(s) 208
TasI AATT 3 cut(s) 319, 332, 684
TauI GCSGC 2 cut(s) 138, 573
TfiI GAWTC 2 cut(s) 172, 268
TscAI CASTG 2 cut(s) 672, 703
TseFI GTSAC 2 cut(s) 241, 663
TseI GCWGC 4 cut(s) 9, 195, 603, 740
Tsp45I GTSAC 2 cut(s) 241, 663
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 2 cut(s) 347, 459
TspRI CASTG 2 cut(s) 672, 703
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 763
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 682
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.