Rorug03G0003700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013410
Physical Location & Seq
Reverse (-)
316011 .. 317242
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0003700.1

Sequence Viewer

Length: 603 bp
ATGGGACTGGGATTGCAGGGTCCAAAATCCCTTGTGGGCTTTGTTCTTCTGCTCCTCCTTGCTGTGATCGGCGCCGTGGCCGGAGCATCGCCGGCCCCCAAATCCAGCCGCAAAACAAGCATCGGAGGAGGAGGAGGAGGAGGAAGCATCTACGATCACCTCCGGCAATATGGCTTGCCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACGATTCCAGCGGCGAATTCCGGGTGTTTCTGCCCCAGCCTTGCCGCGCCAAGTTCGAGAATCAGGTCCGGTACGATTTGAACGTCTCCGGGACTCTCACTTTCGGCCGAATCGCCGACTTGTCCGGCGTCTCCGCTCAGGAGCTCTTCCTTTGGTTTCCGGTGAAAGGTATCCGAGTGGATGTGCCCAGCTCCGGCCTCATTTACTTCGATGTCGGCGTTGTCGATAAGCAGTTCTCTTTGTCCCTCTTCGAGTCTCCGCCCGATTGCACTGCTCTTGATCCTTATGATCCCTCTTCTTCTTCTTCCAATTCCCCATCTGAGCTCAAGGTAGATTCTGATTCCACTTCCAATTCTCAATTCCATTCGGCTGCTTCGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LysM

Protein Analysis

200

Amino Acids

21.05

Weight (kDa)

5.09

Isoelectric Point (pI)

49.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 50 - 158 2.7e-34 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55000 AT1G55000 AT1G55000
fragaria_vesca FvH4_6g06020
malus_domestica MD04G1204800.v1.1 MD12G1218500.v1.1
prunus_persica Prupe.6G324800_v2.0.a1
pyrus_communis pycom04g18100
rosa_chinensis RchiOBHm_Chr3g0454981
rosa_laevigata RLG00000025396
rosa_multiflora Rmu_sc0001861.1_g000058
rosa_roxburghii Rroxscaffold_6G00424630
rosa_rugosa Rorug03G0003700
rosa_samantha Rh3AG063300 Rh3BG065300 Rh3CG064100 Rh3DG065300
rosa_wichuraiana Rw3G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 356
AccII CGCG 1 cut(s) 267
AciI CCGC 5 cut(s) 109, 231, 265, 354, 479
AclWI GGATC 2 cut(s) 494, 503
AcoI YGGCCR 2 cut(s) 78, 325
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 2 cut(s) 72, 348
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 2 cut(s) 386, 413
AgsI TTSAA 1 cut(s) 301
AjuI GAANNNNNNNTTGG 2 cut(s) 563, 595
AluBI AGCT 3 cut(s) 364, 411, 544
AluI AGCT 3 cut(s) 364, 411, 544
Alw21I GWGCWC 2 cut(s) 366, 546
Alw26I GTCTC 3 cut(s) 310, 355, 480
AlwI GGATC 2 cut(s) 494, 503
AoxI GGCC 5 cut(s) 78, 93, 184, 325, 415
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 1 cut(s) 236
AspLEI GCGC 2 cut(s) 74, 269
AspS9I GGNCC 3 cut(s) 20, 94, 286
AsuC2I CCSGG 2 cut(s) 242, 310
AsuHPI GGTGA 2 cut(s) 149, 394
AvaII GGWCC 2 cut(s) 20, 286
BaeGI GKGCMC 1 cut(s) 408
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 2 cut(s) 366, 546
Bbv12I GWGCWC 2 cut(s) 366, 546
BbvI GCAGC 1 cut(s) 577
BccI CCATC 2 cut(s) 188, 544
BceAI ACGGC 1 cut(s) 59
BcgI CGANNNNNNTGC 2 cut(s) 473, 507
BciVI GTATCC 1 cut(s) 401
BcnI CCSGG 2 cut(s) 242, 310
BcoDI GTCTC 3 cut(s) 310, 355, 480
BfoI RGCGCY 1 cut(s) 75
BfuI GTATCC 1 cut(s) 401
BisI GCNGC 4 cut(s) 109, 232, 265, 591
BlsI GCNGC 4 cut(s) 110, 233, 266, 592
Bme1390I CCNGG 2 cut(s) 242, 310
Bme18I GGWCC 2 cut(s) 20, 286
BmgT120I GGNCC 3 cut(s) 20, 94, 286
BmiI GGNNCC 3 cut(s) 21, 73, 96
BmrFI CCNGG 2 cut(s) 242, 310
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 4 cut(s) 95, 129, 156, 210
BmuI ACTGGG 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 2 cut(s) 242, 310
BsaHI GRCGYC 2 cut(s) 72, 348
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 2 cut(s) 288, 379
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 413
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 2 cut(s) 386, 413
BseMII CTCAG 2 cut(s) 371, 531
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 7 cut(s) 44, 141, 144, 147, 150, 153, 179
BseSI GKGCMC 1 cut(s) 408
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 577
BseYI CCCAGC 2 cut(s) 255, 407
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 5 cut(s) 80, 95, 186, 327, 417
BshNI GGYRCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 328
BsiHKAI GWGCWC 2 cut(s) 366, 546
BsiSI CCGG 9 cut(s) 81, 92, 163, 241, 289, 309, 345, 380, 414
BslFI GGGAC 3 cut(s) 18, 325, 448
BslI CCNNNNNNNGG 2 cut(s) 386, 413
BsmAI GTCTC 3 cut(s) 310, 355, 480
BsmBI CGTCTC 2 cut(s) 310, 355
BsmFI GGGAC 3 cut(s) 18, 325, 448
BsnI GGCC 5 cut(s) 80, 95, 186, 327, 417
Bsp1286I GDGCHC 3 cut(s) 366, 408, 546
Bsp143I GATC 4 cut(s) 66, 154, 499, 508
BspACI CCGC 5 cut(s) 109, 231, 265, 354, 479
BspANI GGCC 5 cut(s) 80, 95, 186, 327, 417
BspCNI CTCAG 2 cut(s) 370, 532
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 21, 73, 96
BspPI GGATC 2 cut(s) 494, 503
BspQI GCTCTTC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 12
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 4 cut(s) 66, 154, 499, 508
BssNI GRCGYC 2 cut(s) 72, 348
Bst6I CTCTTC 3 cut(s) 371, 473, 520
BstACI GRCGYC 2 cut(s) 72, 348
BstC8I GCNNGC 2 cut(s) 93, 176
BstDEI CTNAG 2 cut(s) 357, 540
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 2 cut(s) 74, 269
BstKTI GATC 4 cut(s) 69, 157, 502, 511
BstMAI GTCTC 3 cut(s) 310, 355, 480
BstMBI GATC 4 cut(s) 66, 154, 499, 508
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 92, 117
BstSCI CCNGG 2 cut(s) 240, 308
BstSLI GKGCMC 1 cut(s) 408
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 577
BstZI CGGCCG 1 cut(s) 325
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 5 cut(s) 80, 95, 186, 327, 417
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 406
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 2 cut(s) 93, 176
CfoI GCGC 2 cut(s) 74, 269
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 20, 94, 286
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 292
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 357, 540
DinI GGCGCC 1 cut(s) 73
DpnI GATC 4 cut(s) 68, 156, 501, 510
DpnII GATC 4 cut(s) 66, 154, 499, 508
EaeI YGGCCR 2 cut(s) 78, 325
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 371, 473, 520
EarI CTCTTC 3 cut(s) 371, 473, 520
EciI GGCGGA 1 cut(s) 468
Ecl136II GAGCTC 2 cut(s) 364, 544
EclXI CGGCCG 1 cut(s) 325
Eco24I GRGCYC 2 cut(s) 366, 546
Eco47I GGWCC 2 cut(s) 20, 286
Eco52I CGGCCG 1 cut(s) 325
Eco53kI GAGCTC 2 cut(s) 364, 544
EcoICRI GAGCTC 2 cut(s) 364, 544
EcoRI GAATTC 1 cut(s) 236
EcoT38I GRGCYC 2 cut(s) 366, 546
EgeI GGCGCC 1 cut(s) 73
EheI GGCGCC 1 cut(s) 73
Esp3I CGTCTC 2 cut(s) 310, 355
FaiI YATR 2 cut(s) 171, 507
FaqI GGGAC 3 cut(s) 18, 325, 448
Fnu4HI GCNGC 4 cut(s) 109, 232, 265, 591
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 2 cut(s) 366, 546
Fsp4HI GCNGC 4 cut(s) 109, 232, 265, 591
GlaI GCGC 2 cut(s) 73, 268
GluI GCNGC 4 cut(s) 109, 232, 265, 591
GsaI CCCAGC 2 cut(s) 259, 411
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 5 cut(s) 80, 95, 186, 327, 417
HapII CCGG 9 cut(s) 81, 92, 163, 241, 289, 309, 345, 380, 414
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 74, 269
Hin1I GRCGYC 2 cut(s) 72, 348
Hin6I GCGC 2 cut(s) 72, 267
HinP1I GCGC 2 cut(s) 72, 267
HinfI GANTC 7 cut(s) 224, 280, 313, 330, 473, 554, 560
HpaII CCGG 9 cut(s) 81, 92, 163, 241, 289, 309, 345, 380, 414
HphI GGTGA 2 cut(s) 149, 394
Hpy188I TCNGA 4 cut(s) 125, 395, 541, 559
Hpy188III TCNNGA 3 cut(s) 277, 359, 497
Hpy99I CGWCG 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 16, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 117
HpyF3I CTNAG 2 cut(s) 357, 540
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 2 cut(s) 72, 348
HspAI GCGC 2 cut(s) 72, 267
KasI GGCGCC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Kzo9I GATC 4 cut(s) 66, 154, 499, 508
LguI GCTCTTC 1 cut(s) 371
LmnI GCTCC 4 cut(s) 57, 83, 361, 416
Lsp1109I GCAGC 1 cut(s) 577
LweI GCATC 4 cut(s) 95, 129, 156, 210
MaeII ACGT 1 cut(s) 303
MalI GATC 4 cut(s) 68, 156, 501, 510
MbiI CCGCTC 1 cut(s) 356
MboI GATC 4 cut(s) 66, 154, 499, 508
MboII GAAGA 7 cut(s) 38, 358, 460, 507, 510, 513, 516
MhlI GDGCHC 3 cut(s) 366, 408, 546
MluCI AATT 4 cut(s) 236, 529, 571, 578
Mly113I GGCGCC 1 cut(s) 72
MlyI GAGTC 2 cut(s) 307, 482
MroNI GCCGGC 1 cut(s) 91
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 9 cut(s) 81, 92, 163, 241, 289, 309, 345, 380, 414
MspR9I CCNGG 2 cut(s) 242, 310
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 92, 117
NaeI GCCGGC 1 cut(s) 93
NarI GGCGCC 1 cut(s) 72
NciI CCSGG 2 cut(s) 242, 310
NdeII GATC 4 cut(s) 66, 154, 499, 508
NgoMIV GCCGGC 1 cut(s) 91
NlaIV GGNNCC 3 cut(s) 21, 73, 96
PciSI GCTCTTC 1 cut(s) 371
PcsI WCGNNNNNNNCGW 4 cut(s) 300, 435, 441, 593
PdiI GCCGGC 1 cut(s) 93
PfeI GAWTC 5 cut(s) 224, 280, 330, 554, 560
PfoI TCCNGGA 1 cut(s) 308
PkrI GCNGC 4 cut(s) 110, 233, 266, 592
PleI GAGTC 2 cut(s) 307, 481
PluTI GGCGCC 1 cut(s) 75
PpsI GAGTC 2 cut(s) 307, 481
Psp124BI GAGCTC 2 cut(s) 366, 546
PspFI CCCAGC 2 cut(s) 255, 407
PspN4I GGNNCC 3 cut(s) 21, 73, 96
PspPI GGNCC 3 cut(s) 20, 94, 286
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SacI GAGCTC 2 cut(s) 366, 546
SapI GCTCTTC 1 cut(s) 371
SatI GCNGC 4 cut(s) 109, 232, 265, 591
Sau3AI GATC 4 cut(s) 66, 154, 499, 508
Sau96I GGNCC 3 cut(s) 20, 94, 286
SchI GAGTC 2 cut(s) 307, 482
ScrFI CCNGG 2 cut(s) 242, 310
SduI GDGCHC 3 cut(s) 366, 408, 546
SetI ASST 8 cut(s) 162, 288, 306, 366, 391, 413, 546, 552
SfaNI GCATC 4 cut(s) 95, 129, 156, 210
SfoI GGCGCC 1 cut(s) 73
SinI GGWCC 2 cut(s) 20, 286
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 4 cut(s) 236, 529, 571, 578
SsiI CCGC 5 cut(s) 109, 231, 265, 354, 479
SspDI GGCGCC 1 cut(s) 71
SspI AATATT 1 cut(s) 212
SstI GAGCTC 2 cut(s) 366, 546
StyD4I CCNGG 2 cut(s) 240, 308
TaiI ACGT 1 cut(s) 306
TaqI TCGA 6 cut(s) 219, 276, 429, 444, 471, 596
TasI AATT 4 cut(s) 236, 529, 571, 578
TauI GCSGC 3 cut(s) 111, 234, 267
TfiI GAWTC 5 cut(s) 224, 280, 330, 554, 560
TscAI CASTG 1 cut(s) 496
TseI GCWGC 1 cut(s) 590
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 20, 286
XapI RAATTY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.