Rmu_sc0001861.1_g000058

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001861.1
OG0013410
Physical Location & Seq
Forward (+)
195825 .. 196758
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001861.1_g000058.1.cds

Sequence Viewer

Length: 699 bp
atgaactctcacttctcggccctggcctgccgcgacaccctccgcctcatcttcgagaagcttccgatcccggacctcgctcgctccagctgcgtctgccgcgcctggaactccgtcgcctccgatcaagagatcgtcgccaacgccttcaaatcgccgtggaagctcaaggacgtcgtcggaaaacccgcctccggaagcttctggagagataacagcctcgggaaattcgccatctcacaccgaattgcccgcggcgatagcgtcgctagcctcgccgtcaagttttccgttcaggtgatggacataaagcgcttgaacaacatgatgagcgagcatggaatctactcgagggagaggttgttgattccgataagcgatcctgaaatgcttgtgggagctacctgctatgtcgaagtggatccctgtgccaagagagaagttgcggtgttgtatttggaagatggtcctgaccagaaatcaatgagctcttgctctttgtcgcagaagagtgccgacagcagtggcttgaattctgaactaggtaagaagagggttcttgagtctctgaggagaagcatgcacgttgatgatgccactgctctgtactacttgtccattgctgatggggatccgagagctgcattgtctcagttctcgcaggaccttaggtgggagactcattcggcgtttgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like LysM

Protein Analysis

232

Amino Acids

25.68

Weight (kDa)

7.62

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G55000 AT1G55000 AT1G55000
fragaria_vesca FvH4_6g06020
malus_domestica MD04G1204800.v1.1 MD12G1218500.v1.1
prunus_persica Prupe.6G324800_v2.0.a1
pyrus_communis pycom04g18100
rosa_chinensis RchiOBHm_Chr3g0454981
rosa_laevigata RLG00000025396
rosa_multiflora Rmu_sc0001861.1_g000058
rosa_roxburghii Rroxscaffold_6G00424630
rosa_rugosa Rorug03G0003700
rosa_samantha Rh3AG063300 Rh3BG065300 Rh3CG064100 Rh3DG065300
rosa_wichuraiana Rw3G004970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 413
AccII CGCG 3 cut(s) 33, 102, 255
AccIII TCCGGA 1 cut(s) 194
AciI CCGC 7 cut(s) 31, 43, 100, 189, 253, 255, 446
AclWI GGATC 6 cut(s) 61, 374, 416, 429, 626, 639
AcsI RAATTY 2 cut(s) 227, 532
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 1 cut(s) 608
AfeI AGCGCT 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 194, 673
AgsI TTSAA 3 cut(s) 151, 319, 532
AjnI CCWGG 2 cut(s) 21, 104
AluBI AGCT 7 cut(s) 61, 90, 166, 201, 401, 489, 641
AluI AGCT 7 cut(s) 61, 90, 166, 201, 401, 489, 641
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 3 cut(s) 570, 654, 671
AlwI GGATC 6 cut(s) 61, 374, 416, 429, 626, 639
Ama87I CYCGRG 2 cut(s) 221, 349
Aor13HI TCCGGA 1 cut(s) 194
Aor51HI AGCGCT 1 cut(s) 314
AoxI GGCC 2 cut(s) 18, 24
ApeKI GCWGC 2 cut(s) 90, 641
ApoI RAATTY 2 cut(s) 227, 532
AspLEI GCGC 2 cut(s) 104, 315
AspS9I GGNCC 4 cut(s) 19, 73, 467, 664
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 310
AsuNHI GCTAGC 1 cut(s) 269
AvaI CYCGRG 2 cut(s) 221, 349
AvaII GGWCC 3 cut(s) 73, 467, 664
AxyI CCTNAGG 1 cut(s) 668
BamHI GGATCC 2 cut(s) 421, 631
BanII GRGCYC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 491
BbvI GCAGC 2 cut(s) 77, 628
BccI CCATC 4 cut(s) 242, 295, 458, 620
BceAI ACGGC 2 cut(s) 142, 263
BciT130I CCWGG 2 cut(s) 23, 106
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 570, 654, 671
BfaI CTAG 2 cut(s) 270, 542
BfoI RGCGCY 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 413
BisI GCNGC 5 cut(s) 31, 91, 100, 256, 642
BlsI GCNGC 5 cut(s) 32, 92, 101, 257, 643
Bme1390I CCNGG 3 cut(s) 23, 71, 106
Bme18I GGWCC 3 cut(s) 73, 467, 664
BmeT110I CYCGRG 2 cut(s) 221, 349
BmgT120I GGNCC 4 cut(s) 19, 73, 467, 664
BmiI GGNNCC 2 cut(s) 423, 633
BmrFI CCNGG 3 cut(s) 23, 71, 106
BmsI GCATC 1 cut(s) 583
BmtI GCTAGC 1 cut(s) 273
BpmI CTGGAG 2 cut(s) 70, 226
BpuEI CTTGAG 2 cut(s) 152, 581
BpuMI CCSGG 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 4 cut(s) 21, 158, 220, 253
BsaWI WCCGGW 1 cut(s) 194
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 673
Bse21I CCTNAGG 1 cut(s) 668
Bse3DI GCAATG 1 cut(s) 618
Bse8I GATNNNNATC 1 cut(s) 630
BseAI TCCGGA 1 cut(s) 194
BseBI CCWGG 2 cut(s) 23, 106
BseDI CCNNGG 4 cut(s) 21, 158, 220, 253
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 2 cut(s) 194, 673
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 2 cut(s) 560, 665
BseRI GAGGAG 1 cut(s) 586
BseXI GCAGC 2 cut(s) 77, 628
Bsh1236I CGCG 3 cut(s) 33, 102, 255
BshFI GGCC 2 cut(s) 20, 26
BsiHKAI GWGCWC 1 cut(s) 491
BsiHKCI CYCGRG 2 cut(s) 221, 349
BsiSI CCGG 2 cut(s) 71, 195
BslI CCNNNNNNNGG 2 cut(s) 194, 673
BsmAI GTCTC 3 cut(s) 570, 654, 671
BsnI GGCC 2 cut(s) 20, 26
BsoBI CYCGRG 2 cut(s) 221, 349
Bsp1286I GDGCHC 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 194
Bsp143I GATC 6 cut(s) 66, 124, 132, 379, 421, 631
BspACI CCGC 7 cut(s) 31, 43, 100, 189, 253, 255, 446
BspANI GGCC 2 cut(s) 20, 26
BspCNI CTCAG 2 cut(s) 561, 664
BspEI TCCGGA 1 cut(s) 194
BspFNI CGCG 3 cut(s) 33, 102, 255
BspLI GGNNCC 2 cut(s) 423, 633
BspMI ACCTGC 1 cut(s) 413
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 6 cut(s) 61, 374, 416, 429, 626, 639
BsrDI GCAATG 1 cut(s) 618
BssECI CCNNGG 4 cut(s) 21, 158, 220, 253
BssMI GATC 6 cut(s) 66, 124, 132, 379, 421, 631
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 2 cut(s) 23, 106
Bst6I CTCTTC 2 cut(s) 503, 545
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 6 cut(s) 28, 82, 253, 271, 335, 581
BstDEI CTNAG 3 cut(s) 569, 651, 668
BstDSI CCRYGG 2 cut(s) 158, 253
BstFNI CGCG 3 cut(s) 33, 102, 255
BstH2I RGCGCY 1 cut(s) 316
BstHHI GCGC 2 cut(s) 104, 315
BstKTI GATC 6 cut(s) 69, 127, 135, 382, 424, 634
BstMAI GTCTC 3 cut(s) 570, 654, 671
BstMBI GATC 6 cut(s) 66, 124, 132, 379, 421, 631
BstMWI GCNNNNNNNGC 7 cut(s) 90, 96, 99, 163, 261, 270, 275
BstNI CCWGG 2 cut(s) 23, 106
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 3 cut(s) 21, 69, 104
BstUI CGCG 3 cut(s) 33, 102, 255
BstV1I GCAGC 2 cut(s) 77, 628
BstX2I RGATCY 2 cut(s) 421, 631
BstYI RGATCY 2 cut(s) 421, 631
Bsu36I CCTNAGG 1 cut(s) 668
BsuRI GGCC 2 cut(s) 20, 26
BtgI CCRYGG 2 cut(s) 158, 253
BtsI GCAGTG 2 cut(s) 529, 597
BtsIMutI CAGTG 2 cut(s) 529, 597
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 6 cut(s) 28, 82, 253, 271, 335, 581
CfoI GCGC 2 cut(s) 104, 315
Cfr13I GGNCC 4 cut(s) 19, 73, 467, 664
Cfr42I CCGCGG 1 cut(s) 256
CseI GACGC 2 cut(s) 82, 253
Csp6I GTAC 1 cut(s) 607
CviAII CATG 3 cut(s) 325, 338, 580
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 3 cut(s) 569, 651, 668
DpnI GATC 6 cut(s) 68, 126, 134, 381, 423, 633
DpnII GATC 6 cut(s) 66, 124, 132, 379, 421, 631
Eam1104I CTCTTC 2 cut(s) 503, 545
EarI CTCTTC 2 cut(s) 503, 545
EciI GGCGGA 1 cut(s) 32
Ecl136II GAGCTC 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 491
Eco47I GGWCC 3 cut(s) 73, 467, 664
Eco47III AGCGCT 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 489
Eco81I CCTNAGG 1 cut(s) 668
Eco88I CYCGRG 2 cut(s) 221, 349
EcoICRI GAGCTC 1 cut(s) 489
EcoO109I RGGNCCY 1 cut(s) 664
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 2 cut(s) 21, 104
EcoT38I GRGCYC 1 cut(s) 491
FaeI CATG 3 cut(s) 328, 341, 583
FaiI YATR 5 cut(s) 308, 326, 339, 411, 581
FatI CATG 3 cut(s) 324, 337, 579
FauI CCCGC 2 cut(s) 196, 260
Fnu4HI GCNGC 5 cut(s) 31, 91, 100, 256, 642
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 5 cut(s) 31, 91, 100, 256, 642
FspBI CTAG 2 cut(s) 270, 542
GlaI GCGC 2 cut(s) 103, 314
GluI GCNGC 5 cut(s) 31, 91, 100, 256, 642
GsuI CTGGAG 2 cut(s) 70, 226
HaeII RGCGCY 1 cut(s) 316
HaeIII GGCC 2 cut(s) 20, 26
HapII CCGG 2 cut(s) 71, 195
HgaI GACGC 2 cut(s) 82, 253
HhaI GCGC 2 cut(s) 104, 315
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 3 cut(s) 328, 341, 583
Hin6I GCGC 2 cut(s) 102, 313
HinP1I GCGC 2 cut(s) 102, 313
HindIII AAGCTT 2 cut(s) 59, 199
HinfI GANTC 4 cut(s) 342, 367, 563, 679
HpaII CCGG 2 cut(s) 71, 195
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 7 cut(s) 66, 124, 182, 372, 538, 570, 636
Hpy188III TCNNGA 8 cut(s) 55, 128, 195, 205, 223, 383, 470, 560
Hpy99I CGWCG 5 cut(s) 119, 140, 179, 182, 269
HpyAV CCTTC 1 cut(s) 157
HpyCH4IV ACGT 2 cut(s) 174, 585
HpyCH4V TGCA 2 cut(s) 583, 644
HpyF10VI GCNNNNNNNGC 7 cut(s) 90, 96, 99, 163, 261, 270, 275
HpyF3I CTNAG 3 cut(s) 569, 651, 668
HpySE526I ACGT 2 cut(s) 174, 585
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 3 cut(s) 328, 341, 583
HspAI GCGC 2 cut(s) 102, 313
Kpn2I TCCGGA 1 cut(s) 194
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 6 cut(s) 66, 124, 132, 379, 421, 631
LmnI GCTCC 2 cut(s) 89, 398
Lsp1109I GCAGC 2 cut(s) 77, 628
LweI GCATC 1 cut(s) 583
MaeI CTAG 2 cut(s) 270, 542
MaeII ACGT 2 cut(s) 174, 585
MalI GATC 6 cut(s) 68, 126, 134, 381, 423, 633
MboI GATC 6 cut(s) 66, 124, 132, 379, 421, 631
MboII GAAGA 4 cut(s) 43, 473, 520, 562
MflI RGATCY 2 cut(s) 421, 631
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 3 cut(s) 227, 246, 532
MlyI GAGTC 2 cut(s) 572, 673
MmeI TCCRAC 1 cut(s) 160
MroI TCCGGA 1 cut(s) 194
MseI TTAA 1 cut(s) 697
MslI CAYNNNNRTG 1 cut(s) 588
MspA1I CMGCKG 2 cut(s) 90, 255
MspI CCGG 2 cut(s) 71, 195
MspR9I CCNGG 3 cut(s) 23, 71, 106
MvaI CCWGG 2 cut(s) 23, 106
MvnI CGCG 3 cut(s) 33, 102, 255
MwoI GCNNNNNNNGC 7 cut(s) 90, 96, 99, 163, 261, 270, 275
NciI CCSGG 1 cut(s) 71
NdeII GATC 6 cut(s) 66, 124, 132, 379, 421, 631
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 3 cut(s) 328, 341, 583
NlaIV GGNNCC 2 cut(s) 423, 633
NspI RCATGY 1 cut(s) 583
PaeI GCATGC 1 cut(s) 583
PaeR7I CTCGAG 1 cut(s) 349
PfeI GAWTC 2 cut(s) 342, 367
PflFI GACNNNGTC 1 cut(s) 176
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 5 cut(s) 32, 92, 101, 257, 643
PleI GAGTC 2 cut(s) 571, 673
PpsI GAGTC 2 cut(s) 571, 673
PpuMI RGGWCCY 1 cut(s) 664
Psp124BI GAGCTC 1 cut(s) 491
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 2 cut(s) 21, 104
PspGI CCWGG 2 cut(s) 21, 104
PspN4I GGNNCC 2 cut(s) 423, 633
PspPI GGNCC 4 cut(s) 19, 73, 467, 664
PspPPI RGGWCCY 1 cut(s) 664
PspXI VCTCGAGB 1 cut(s) 349
PsuI RGATCY 2 cut(s) 421, 631
PsyI GACNNNGTC 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 90
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 588
SacI GAGCTC 1 cut(s) 491
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 1 cut(s) 697
SatI GCNGC 5 cut(s) 31, 91, 100, 256, 642
Sau3AI GATC 6 cut(s) 66, 124, 132, 379, 421, 631
Sau96I GGNCC 4 cut(s) 19, 73, 467, 664
SchI GAGTC 2 cut(s) 572, 673
ScrFI CCNGG 3 cut(s) 23, 71, 106
SduI GDGCHC 1 cut(s) 491
SfaNI GCATC 1 cut(s) 583
Sfr274I CTCGAG 1 cut(s) 349
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 3 cut(s) 73, 467, 664
SlaI CTCGAG 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 3 cut(s) 167, 349, 560
SmoI CTYRAG 3 cut(s) 167, 349, 560
SphI GCATGC 1 cut(s) 583
Sse9I AATT 3 cut(s) 227, 246, 532
SsiI CCGC 7 cut(s) 31, 43, 100, 189, 253, 255, 446
SspMI CTAG 2 cut(s) 270, 542
SstI GAGCTC 1 cut(s) 491
StyD4I CCNGG 3 cut(s) 21, 69, 104
TaiI ACGT 2 cut(s) 177, 588
TaqI TCGA 3 cut(s) 54, 350, 414
TasI AATT 3 cut(s) 227, 246, 532
TatI WGTACW 1 cut(s) 606
TauI GCSGC 3 cut(s) 33, 102, 258
TfiI GAWTC 2 cut(s) 342, 367
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TscAI CASTG 2 cut(s) 529, 604
TseI GCWGC 2 cut(s) 90, 641
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 103, 280
TspRI CASTG 2 cut(s) 529, 604
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 3 cut(s) 73, 467, 664
XapI RAATTY 2 cut(s) 227, 532
XceI RCATGY 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 349
XspI CTAG 2 cut(s) 270, 542
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.