AT1G55150

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20574474 .. 20577351
2878 bp
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UTR
Exon/CDS
Intron
AT1G55150.2

Sequence Viewer

Length: 1506 bp
ATGAGTCGCTACGATAGCCGGACCGGCGATTCCACCTCGTACCGTGACCGTCGAAGTGACTCAGGGTTTGGTGGGACTTCATCATATGGAAGCTCAGGTAGTCATACATCTAGCAAAAAGGATAACGATGGCAATGAATCTCCAAGGAAGCTAGATTTAGATGGTTTGACTCCTTTTGAGAAGAATTTTTATGTCGAGTCTCCCGCTGTGGCGGCTATGACAGACACAGAAGTAGAGGAATATCGAAAGCTAAGGGAAATTACTGTTGAAGGCAAAGATATTCCAAAACCTGTCAAGAGTTTTCGTGATGTTGGCTTTCCTGATTATGTTTTGGAAGAGGTTAAGAAGGCTGGTTTTACTGAACCTACGCCTATACAATCTCAGGGGTGGCCAATGGCTATGAAGGGACGTGATCTTATCGGCATTGCTGAAACTGGTTCTGGAAAGACTCTTTCTTACTTACTACCTGCTATTGTCCATGTTAATGCCCAACCAATGTTAGCTCATGGTGACGGCCCAATCGTCTTGGTTCTTGCTCCCACTCGTGAACTGGCTGTGCAGATACAGCAAGAGGCATCTAAATTTGGTTCATCCTCAAAAATTAAGACCACTTGCATTTATGGTGGGGTTCCAAAAGGGCCTCAAGTGCGTGATCTCCAGAAAGGTGTGGAGATCGTTATAGCTACTCCTGGGAGGTTAATAGACATGATGGAGTCGAACAACACAAACCTACGAAGGGTTACTTATCTTGTTTTGGATGAGGCTGATCGAATGCTTGATATGGGGTTTGACCCTCAGATCCGGAAAATTGTTTCACATATTCGGCCAGACCGTCAAACTTTGTACTGGAGTGCCACTTGGCCTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAAGTGATAATAGGATCTTCTGATTTGAAAGCTAACCGTGCAATTCGTCAAATTGTTGATGTCATTTCCGAAAGCCAAAAGTATAACAAGTTGGTGAAACTGCTTGAGGACATAATGGATGGAAGCAGAATTCTTGTCTTCCTCGATACAAAAAAGGGCTGTGACCAAATCACTCGTCAGCTTCGCATGGATGGTTGGCCTGCTTTGTCAATACATGGAGATAAAAGTCAAGCGGAAAGAGATTGGGTTCTCTCGGAGTTTAGATCAGGCAAAAGCCCTATAATGACTGCTACAGACGTTGCAGCTCGTGGATTAGACGTGAAAGATGTGAAGTATGTGATAAACTATGACTTCCCTGGATCACTGGAGGATTATGTTCACAGGATTGGACGAACAGGTAGAGCCGGGGCTAAAGGAACAGCTTACACTTTCTTCACAGTTGCAAATGCGAGATTCGCCAAGGAACTTACCAACATACTACAAGAAGCTGGACAGAAAGTGAGTCCCGAATTGGCTTCAATGGGTCGCAGTACCGCTCCTCCTCCTCCAGGGCTTGGAGGATTCAGAGACCGTGGGAGCAGAAGAGGGTGGAGCTGA

Protein Analysis

501

Amino Acids

55.58

Weight (kDa)

9.1

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 148 - 318 8.1e-50 DEAD/DEAH box helicase
ResIII PF04851 167 - 311 2.5e-06 Type III restriction enzyme, res subunit
Helicase_C PF00271 355 - 464 7.2e-32 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 900
Acc36I ACCTGC 1 cut(s) 475
AccB7I CCANNNNNTGG 1 cut(s) 1463
AccBSI CCGCTC 1 cut(s) 1445
AccIII TCCGGA 1 cut(s) 801
AciI CCGC 4 cut(s) 204, 212, 1142, 1443
AclWI GGATC 3 cut(s) 793, 931, 1276
AcoI YGGCCR 2 cut(s) 389, 824
AcsI RAATTY 3 cut(s) 184, 581, 1038
AfaI GTAC 3 cut(s) 41, 845, 1441
AfiI CCNNNNNNNGG 3 cut(s) 736, 1457, 1463
AgsI TTSAA 3 cut(s) 269, 937, 1428
AjiI CACGTC 2 cut(s) 410, 1228
AjnI CCWGG 3 cut(s) 688, 1264, 1456
Alw26I GTCTC 2 cut(s) 204, 1470
AlwI GGATC 3 cut(s) 793, 931, 1276
Aor13HI TCCGGA 1 cut(s) 801
AoxI GGCC 6 cut(s) 389, 514, 638, 824, 860, 1106
ApeKI GCWGC 1 cut(s) 1211
ApoI RAATTY 3 cut(s) 184, 581, 1038
ArsI GACNNNNNNTTYG 4 cut(s) 50, 82, 1069, 1101
AspS9I GGNCC 3 cut(s) 21, 515, 638
AsuC2I CCSGG 1 cut(s) 1315
AsuHPI GGTGA 2 cut(s) 521, 1015
AvaII GGWCC 1 cut(s) 21
AxyI CCTNAGG 1 cut(s) 864
BalI TGGCCA 1 cut(s) 391
BauI CACGAG 2 cut(s) 543, 1215
BbsI GAAGAC 1 cut(s) 1039
BbvI GCAGC 1 cut(s) 1223
BccI CCATC 5 cut(s) 122, 155, 703, 1022, 1094
BceAI ACGGC 1 cut(s) 529
BciT130I CCWGG 3 cut(s) 690, 1266, 1458
BcnI CCSGG 1 cut(s) 1315
BcoDI GTCTC 2 cut(s) 204, 1470
BfaI CTAG 2 cut(s) 111, 152
BfmI CTRYAG 1 cut(s) 1200
BfuAI ACCTGC 1 cut(s) 475
BglI GCCNNNNNGGC 1 cut(s) 24
BisI GCNGC 2 cut(s) 213, 1212
BlsI GCNGC 2 cut(s) 214, 1213
Bme1390I CCNGG 4 cut(s) 690, 1266, 1315, 1458
Bme18I GGWCC 1 cut(s) 21
BmgBI CACGTC 2 cut(s) 410, 1228
BmgT120I GGNCC 3 cut(s) 21, 515, 638
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 4 cut(s) 690, 1266, 1315, 1458
BmsI GCATC 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 1039
BpmI CTGGAG 4 cut(s) 641, 868, 1295, 1440
Bpu10I CCTNAGC 2 cut(s) 94, 251
BpuEI CTTGAG 2 cut(s) 627, 1034
BpuMI CCSGG 1 cut(s) 1315
BsaI GGTCTC 1 cut(s) 1470
BsaJI CCNNGG 7 cut(s) 143, 689, 1264, 1314, 1368, 1457, 1480
BsaWI WCCGGW 1 cut(s) 801
BsaXI ACNNNNNCTCC 2 cut(s) 1432, 1462
Bsc4I CCNNNNNNNGG 3 cut(s) 736, 1457, 1463
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 4 cut(s) 439, 555, 851, 1278
Bse21I CCTNAGG 1 cut(s) 864
Bse3DI GCAATG 2 cut(s) 139, 423
BseAI TCCGGA 1 cut(s) 801
BseBI CCWGG 3 cut(s) 690, 1266, 1458
BseDI CCNNGG 7 cut(s) 143, 689, 1264, 1314, 1368, 1457, 1480
BseGI GGATG 4 cut(s) 590, 763, 1033, 1105
BseLI CCNNNNNNNGG 3 cut(s) 736, 1457, 1463
BseMI GCAATG 2 cut(s) 139, 423
BseMII CTCAG 4 cut(s) 75, 108, 395, 809
BseNI ACTGG 4 cut(s) 439, 555, 851, 1278
BseRI GAGGAG 3 cut(s) 1437, 1440, 1443
BseXI GCAGC 1 cut(s) 1223
BsgI GTGCAG 1 cut(s) 578
BshFI GGCC 6 cut(s) 391, 516, 640, 826, 862, 1108
BsiSI CCGG 4 cut(s) 19, 24, 802, 1314
BslFI GGGAC 3 cut(s) 88, 420, 1398
BslI CCNNNNNNNGG 3 cut(s) 736, 1457, 1463
BsmAI GTCTC 2 cut(s) 204, 1470
BsmFI GGGAC 3 cut(s) 88, 420, 1398
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 6 cut(s) 391, 516, 640, 826, 862, 1108
Bso31I GGTCTC 1 cut(s) 1470
Bsp13I TCCGGA 1 cut(s) 801
Bsp143I GATC 8 cut(s) 412, 652, 672, 766, 798, 923, 1172, 1268
BspACI CCGC 4 cut(s) 204, 212, 1142, 1443
BspANI GGCC 6 cut(s) 391, 516, 640, 826, 862, 1108
BspCNI CTCAG 4 cut(s) 74, 107, 394, 808
BspEI TCCGGA 1 cut(s) 801
BspLI GGNNCC 1 cut(s) 630
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 3 cut(s) 793, 931, 1276
BspTNI GGTCTC 1 cut(s) 1470
BsrBI CCGCTC 1 cut(s) 1445
BsrDI GCAATG 2 cut(s) 139, 423
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 4 cut(s) 439, 555, 851, 1278
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 7 cut(s) 143, 689, 1264, 1314, 1368, 1457, 1480
BssMI GATC 8 cut(s) 412, 652, 672, 766, 798, 923, 1172, 1268
BssSI CACGAG 2 cut(s) 543, 1215
BssT1I CCWWGG 2 cut(s) 143, 1368
Bst2BI CACGAG 2 cut(s) 543, 1215
Bst2UI CCWGG 3 cut(s) 690, 1266, 1458
Bst4CI ACNGT 7 cut(s) 44, 50, 265, 833, 947, 1348, 1481
Bst6I CTCTTC 2 cut(s) 330, 1486
BstC8I GCNNGC 1 cut(s) 1110
BstDEI CTNAG 6 cut(s) 61, 94, 251, 381, 795, 864
BstDSI CCRYGG 1 cut(s) 1480
BstENI CCTNNNNNAGG 1 cut(s) 1455
BstF5I GGATG 4 cut(s) 590, 763, 1033, 1105
BstKTI GATC 8 cut(s) 415, 655, 675, 769, 801, 926, 1175, 1271
BstMAI GTCTC 2 cut(s) 204, 1470
BstMBI GATC 8 cut(s) 412, 652, 672, 766, 798, 923, 1172, 1268
BstMWI GCNNNNNNNGC 7 cut(s) 15, 24, 212, 565, 646, 947, 1364
BstNI CCWGG 3 cut(s) 690, 1266, 1458
BstSCI CCNGG 4 cut(s) 688, 1264, 1313, 1456
BstSFI CTRYAG 1 cut(s) 1200
BstV1I GCAGC 1 cut(s) 1223
BstV2I GAAGAC 1 cut(s) 1039
BstX2I RGATCY 2 cut(s) 798, 923
BstYI RGATCY 2 cut(s) 798, 923
Bsu36I CCTNAGG 1 cut(s) 864
BsuRI GGCC 6 cut(s) 391, 516, 640, 826, 862, 1108
BtgI CCRYGG 1 cut(s) 1480
BtrI CACGTC 2 cut(s) 410, 1228
BtsCI GGATG 4 cut(s) 590, 763, 1033, 1105
BtsIMutI CAGTG 1 cut(s) 1271
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 1110
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 21, 515, 638
CpoI CGGWCCG 1 cut(s) 21
Csp6I GTAC 3 cut(s) 40, 844, 1440
CspI CGGWCCG 1 cut(s) 21
CviAII CATG 5 cut(s) 479, 506, 706, 1096, 1124
CviQI GTAC 3 cut(s) 40, 844, 1440
DdeI CTNAG 6 cut(s) 61, 94, 251, 381, 795, 864
DpnI GATC 8 cut(s) 414, 654, 674, 768, 800, 925, 1174, 1270
DpnII GATC 8 cut(s) 412, 652, 672, 766, 798, 923, 1172, 1268
EaeI YGGCCR 2 cut(s) 389, 824
Eam1104I CTCTTC 2 cut(s) 330, 1486
EarI CTCTTC 2 cut(s) 330, 1486
Eco130I CCWWGG 2 cut(s) 143, 1368
Eco31I GGTCTC 1 cut(s) 1470
Eco47I GGWCC 1 cut(s) 21
Eco81I CCTNAGG 1 cut(s) 864
EcoNI CCTNNNNNAGG 1 cut(s) 1455
EcoO109I RGGNCCY 1 cut(s) 638
EcoRI GAATTC 1 cut(s) 1038
EcoRII CCWGG 3 cut(s) 688, 1264, 1456
EcoT14I CCWWGG 2 cut(s) 143, 1368
ErhI CCWWGG 2 cut(s) 143, 1368
FaeI CATG 5 cut(s) 482, 509, 709, 1099, 1127
FalI AAGNNNNNCTT 2 cut(s) 727, 759
FaqI GGGAC 3 cut(s) 88, 420, 1398
FatI CATG 5 cut(s) 478, 505, 705, 1095, 1123
FauI CCCGC 1 cut(s) 211
FauNDI CATATG 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 213, 1212
FokI GGATG 4 cut(s) 577, 770, 1040, 1112
Fsp4HI GCNGC 2 cut(s) 213, 1212
FspBI CTAG 2 cut(s) 111, 152
GluI GCNGC 2 cut(s) 213, 1212
GsuI CTGGAG 4 cut(s) 641, 868, 1295, 1440
HaeIII GGCC 6 cut(s) 391, 516, 640, 826, 862, 1108
HapII CCGG 4 cut(s) 19, 24, 802, 1314
Hin1II CATG 5 cut(s) 482, 509, 709, 1099, 1127
HpaII CCGG 4 cut(s) 19, 24, 802, 1314
HphI GGTGA 2 cut(s) 521, 1015
Hpy166II GTNNAC 2 cut(s) 548, 1288
Hpy188I TCNGA 5 cut(s) 798, 931, 979, 1165, 1475
Hpy188III TCNNGA 8 cut(s) 295, 305, 320, 441, 545, 658, 802, 1415
Hpy8I GTNNAC 2 cut(s) 548, 1288
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 4 cut(s) 263, 340, 397, 729
HpyCH4III ACNGT 7 cut(s) 44, 50, 265, 833, 947, 1348, 1481
HpyCH4IV ACGT 3 cut(s) 409, 1206, 1227
HpyCH4V TGCA 5 cut(s) 559, 615, 950, 1211, 1352
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 24, 212, 565, 646, 947, 1364
HpyF3I CTNAG 6 cut(s) 61, 94, 251, 381, 795, 864
HpySE526I ACGT 3 cut(s) 409, 1206, 1227
Hsp92II CATG 5 cut(s) 482, 509, 709, 1099, 1127
Kpn2I TCCGGA 1 cut(s) 801
Kzo9I GATC 8 cut(s) 412, 652, 672, 766, 798, 923, 1172, 1268
LmnI GCTCC 4 cut(s) 541, 1450, 1485, 1500
Lsp1109I GCAGC 1 cut(s) 1223
LweI GCATC 1 cut(s) 584
MaeI CTAG 2 cut(s) 111, 152
MaeII ACGT 3 cut(s) 409, 1206, 1227
MaeIII GTNAC 5 cut(s) 44, 56, 509, 739, 1070
MalI GATC 8 cut(s) 414, 654, 674, 768, 800, 925, 1174, 1270
MbiI CCGCTC 1 cut(s) 1445
MboI GATC 8 cut(s) 412, 652, 672, 766, 798, 923, 1172, 1268
MboII GAAGA 7 cut(s) 193, 347, 898, 918, 1039, 1333, 1503
MflI RGATCY 2 cut(s) 798, 923
MlsI TGGCCA 1 cut(s) 391
MluCI AATT 9 cut(s) 184, 258, 581, 600, 807, 951, 960, 1038, 1418
MluNI TGGCCA 1 cut(s) 391
MlyI GAGTC 7 cut(s) 13, 53, 163, 206, 442, 722, 1420
Mox20I TGGCCA 1 cut(s) 391
MroI TCCGGA 1 cut(s) 801
MscI TGGCCA 1 cut(s) 391
MseI TTAA 4 cut(s) 342, 483, 603, 698
MslI CAYNNNNRTG 1 cut(s) 483
Msp20I TGGCCA 1 cut(s) 391
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 4 cut(s) 19, 24, 802, 1314
MspR9I CCNGG 4 cut(s) 690, 1266, 1315, 1458
Mva1269I GAATGC 1 cut(s) 777
MvaI CCWGG 3 cut(s) 690, 1266, 1458
MwoI GCNNNNNNNGC 7 cut(s) 15, 24, 212, 565, 646, 947, 1364
NciI CCSGG 1 cut(s) 1315
NdeI CATATG 1 cut(s) 85
NdeII GATC 8 cut(s) 412, 652, 672, 766, 798, 923, 1172, 1268
NlaIII CATG 5 cut(s) 482, 509, 709, 1099, 1127
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 4 cut(s) 44, 56, 509, 1070
PcsI WCGNNNNNNNCGW 2 cut(s) 519, 829
PctI GAATGC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 29, 137, 1362, 1470
PflMI CCANNNNNTGG 1 cut(s) 1463
PkrI GCNGC 2 cut(s) 214, 1213
PleI GAGTC 7 cut(s) 12, 53, 163, 205, 442, 721, 1419
PpsI GAGTC 7 cut(s) 12, 53, 163, 205, 442, 721, 1419
PsiI TTATAA 1 cut(s) 900
Psp6I CCWGG 3 cut(s) 688, 1264, 1456
PspGI CCWGG 3 cut(s) 688, 1264, 1456
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 3 cut(s) 21, 515, 638
PsuI RGATCY 2 cut(s) 798, 923
RsaI GTAC 3 cut(s) 41, 845, 1441
RsaNI GTAC 3 cut(s) 40, 844, 1440
RseI CAYNNNNRTG 1 cut(s) 483
Rsr2I CGGWCCG 1 cut(s) 21
RsrII CGGWCCG 1 cut(s) 21
SaqAI TTAA 4 cut(s) 342, 483, 603, 698
SatI GCNGC 2 cut(s) 213, 1212
Sau3AI GATC 8 cut(s) 412, 652, 672, 766, 798, 923, 1172, 1268
Sau96I GGNCC 3 cut(s) 21, 515, 638
SchI GAGTC 7 cut(s) 13, 53, 163, 206, 442, 722, 1420
ScrFI CCNGG 4 cut(s) 690, 1266, 1315, 1458
SfaNI GCATC 1 cut(s) 584
SfcI CTRYAG 1 cut(s) 1200
SinI GGWCC 1 cut(s) 21
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 642, 1013
SmoI CTYRAG 2 cut(s) 642, 1013
Sse9I AATT 9 cut(s) 184, 258, 581, 600, 807, 951, 960, 1038, 1418
SsiI CCGC 4 cut(s) 204, 212, 1142, 1443
SspMI CTAG 2 cut(s) 111, 152
StyD4I CCNGG 4 cut(s) 688, 1264, 1313, 1456
StyI CCWWGG 2 cut(s) 143, 1368
TaaI ACNGT 7 cut(s) 44, 50, 265, 833, 947, 1348, 1481
TaiI ACGT 3 cut(s) 412, 1209, 1230
TaqI TCGA 7 cut(s) 52, 195, 244, 716, 769, 884, 1053
TasI AATT 9 cut(s) 184, 258, 581, 600, 807, 951, 960, 1038, 1418
TatI WGTACW 1 cut(s) 843
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 4 cut(s) 29, 137, 1362, 1470
Tru1I TTAA 4 cut(s) 342, 483, 603, 698
Tru9I TTAA 4 cut(s) 342, 483, 603, 698
TscAI CASTG 1 cut(s) 1278
TseFI GTSAC 4 cut(s) 44, 56, 509, 1070
TseI GCWGC 1 cut(s) 1211
Tsp45I GTSAC 4 cut(s) 44, 56, 509, 1070
TspDTI ATGAA 4 cut(s) 69, 150, 416, 579
TspRI CASTG 1 cut(s) 1278
Van91I CCANNNNNTGG 1 cut(s) 1463
VpaK11BI GGWCC 1 cut(s) 21
XagI CCTNNNNNAGG 1 cut(s) 1455
XapI RAATTY 3 cut(s) 184, 581, 1038
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XspI CTAG 2 cut(s) 111, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.