FvH4_6g33220

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
26303590 .. 26311198
7609 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33220.t7

Sequence Viewer

Length: 1323 bp
ATGAGCCGCTACGACAGCCGCTCCGGCGACCCCACCTCCTACCGTGACCGCAGAAGTGATTCCGGGTTTGGTGGGGCGGCCGGCTACGGTGGTTCGGCCCGGTCTTCATCCAGTAGGAAGGATTATGATGGGGCTGAGTCGCCGAAGAAGCTGGATTTGGATGGCTTGACGCCTTTTGAGAAGAATTTCTATGTTGAGTCACCTGAGGTGGAAGCCATGACTGAGAGGGAGGTTGAGGAGTACAGGAAACGGAGGGAAATCACTGTTGAAGGCCGTGATGTTCCTAAGCCCATCAAGAGCTTCCGTGACAGTGGCTTTCCTGAGTATGTCATGCAAGAAATCACAAAAGCTGGATTTGTTGAACCTACACCAATTCAAGCTCAAGGATGGCCAATGGCTTTGAAGGGTCGTGATCTTATTGGTATTGCTGAAACAGGATCAGGAAAGACACTGGCTTACCTGTTGCCTGCAATTGTCCATGTGAATGCCCAGCCAATTTTATCTCCTGGAGATGGCCCAATAGTATTAGTTTTAGCTCCTACCCGTGAACTCGCTGTTCAAATTCAACAAGAGTCAACTAAATTTGGTGCATCTTCCAAAATTAAAAGCACATGCATCTATGGTGGAGTTCCAAAGGGACCTCAAGTTCGTGATCTGCAGAAAGGAGTTGAGATTGTGATTGCTACACCGGGAAGGCTGATTGATATGTTAGAGTCACATACTACAAACTTGCGGAGGGTCACATATCTTGTGTTGGATGAGGCTGACCGGATGCTAGATATGGGGTTTGAGCCTCAGATACGAAAGATTGTTTCTCAGATTCGCCCAGACCGTCAAACATTATACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAACTGGCGAGCAAGTTCCTTTACAATGCATACAAAGTAATTATAGGTTCTCCAGATCTGAAAGCCAACCATTCAATTCGCCAAATTGTTGACATCATGACTGAAAATCAGAAATATAACAAATTGGTAAAGTTGCTGGAAGATATAATGGATGGCAGCAGAATACTGATATTCATGGATACTAAGAAAGGTTGCGATCAGATCACCCGGCAGCTTCGCATGGATGGTTGGCCCGCCCTCTCCATTCATGGAGACAAAAGTCAAGCAGAAAGGGATTGGGTCCTCTCTGAGTTTAAAGCTGGCAAAAGCCCCATAATGACTGCAACAGATGTTGCTGCTCGTGGTCTAGGTAAGGTTTGGCGGGCATCGGATTTGCCTTTGGCTTTGGTAGGAAAAACTGCTAACTTTGGGGTTCATAGATGTGAAGGACGTGAAATATGTAATTAA

Protein Analysis

441

Amino Acids

49.0

Weight (kDa)

8.63

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 123 - 293 3.2e-50 DEAD/DEAH box helicase
ResIII PF04851 142 - 286 5.3e-06 Type III restriction enzyme, res subunit
Helicase_C PF00271 330 - 408 1.2e-14 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 21
AciI CCGC 7 cut(s) 7, 19, 49, 77, 733, 1110, 1237
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 3 cut(s) 78, 389, 860
AcsI RAATTY 3 cut(s) 184, 561, 581
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 8 cut(s) 269, 362, 377, 403, 560, 566, 875, 951
AjiI CACGTC 1 cut(s) 1307
AjnI CCWGG 2 cut(s) 505, 857
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AloI GAACNNNNNNTCC 2 cut(s) 630, 662
AluBI AGCT 7 cut(s) 151, 300, 350, 380, 536, 1090, 1175
AluI AGCT 7 cut(s) 151, 300, 350, 380, 536, 1090, 1175
Alw26I GTCTC 1 cut(s) 1122
AlwI GGATC 1 cut(s) 445
AoxI GGCC 7 cut(s) 78, 96, 271, 389, 514, 860, 1106
ApeKI GCWGC 3 cut(s) 1032, 1087, 1211
ApoI RAATTY 3 cut(s) 184, 561, 581
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
Asp700I GAANNNNTTC 2 cut(s) 58, 185
AspS9I GGNCC 5 cut(s) 97, 515, 638, 1107, 1156
AsuC2I CCSGG 4 cut(s) 64, 100, 690, 1084
AsuHPI GGTGA 2 cut(s) 192, 1072
AvaII GGWCC 2 cut(s) 638, 1156
AxyI CCTNAGG 1 cut(s) 204
BalI TGGCCA 2 cut(s) 391, 862
BauI CACGAG 1 cut(s) 1215
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 1044, 1099, 1198
BccI CCATC 7 cut(s) 122, 155, 299, 381, 506, 1022, 1094
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 2 cut(s) 507, 859
BciVI GTATCC 1 cut(s) 1048
BcnI CCSGG 4 cut(s) 64, 100, 690, 1084
BcoDI GTCTC 1 cut(s) 1122
BfaI CTAG 2 cut(s) 776, 1223
BfmI CTRYAG 1 cut(s) 656
BfuI GTATCC 1 cut(s) 1048
BglI GCCNNNNNGGC 1 cut(s) 24
BglII AGATCT 1 cut(s) 931
BisI GCNGC 6 cut(s) 7, 19, 78, 1033, 1088, 1212
BlsI GCNGC 6 cut(s) 8, 20, 79, 1034, 1089, 1213
Bme1390I CCNGG 6 cut(s) 64, 100, 507, 690, 859, 1084
Bme18I GGWCC 2 cut(s) 638, 1156
BmgBI CACGTC 1 cut(s) 1307
BmgT120I GGNCC 5 cut(s) 97, 515, 638, 1107, 1156
BmiI GGNNCC 2 cut(s) 639, 1157
BmrFI CCNGG 6 cut(s) 64, 100, 507, 690, 859, 1084
BmsI GCATC 4 cut(s) 599, 624, 762, 1250
BoxI GACNNNNGTC 1 cut(s) 1134
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 3 cut(s) 528, 868, 912
Bpu10I CCTNAGC 1 cut(s) 285
BpuEI CTTGAG 2 cut(s) 366, 627
BpuMI CCSGG 4 cut(s) 64, 100, 690, 1084
BsaHI GRCGYC 1 cut(s) 170
BsaWI WCCGGW 1 cut(s) 768
BsaXI ACNNNNNCTCC 4 cut(s) 5, 20, 35, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 4 cut(s) 111, 456, 851, 885
Bse21I CCTNAGG 1 cut(s) 204
BseBI CCWGG 2 cut(s) 507, 859
BseGI GGATG 7 cut(s) 107, 166, 392, 763, 777, 1033, 1105
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMII CTCAG 7 cut(s) 126, 195, 213, 312, 809, 830, 1155
BseNI ACTGG 4 cut(s) 111, 456, 851, 885
BseRI GAGGAG 1 cut(s) 251
BseX3I CGGCCG 1 cut(s) 78
BseXI GCAGC 3 cut(s) 1044, 1099, 1198
BseYI CCCAGC 1 cut(s) 489
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 7 cut(s) 80, 98, 273, 391, 516, 862, 1108
BsiEI CGRYCG 1 cut(s) 81
BsiSI CCGG 7 cut(s) 24, 63, 81, 100, 689, 769, 1084
BslFI GGGAC 1 cut(s) 651
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 1 cut(s) 1122
BsmFI GGGAC 1 cut(s) 651
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 7 cut(s) 80, 98, 273, 391, 516, 862, 1108
Bsp143I GATC 6 cut(s) 412, 437, 652, 931, 1072, 1077
BspACI CCGC 7 cut(s) 7, 19, 49, 77, 733, 1110, 1237
BspANI GGCC 7 cut(s) 80, 98, 273, 391, 516, 862, 1108
BspCNI CTCAG 7 cut(s) 127, 196, 214, 313, 808, 829, 1156
BspHI TCATGA 1 cut(s) 972
BspLI GGNNCC 2 cut(s) 639, 1157
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 1 cut(s) 445
BsrBI CCGCTC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 4 cut(s) 111, 456, 851, 885
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 6 cut(s) 412, 437, 652, 931, 1072, 1077
BssNI GRCGYC 1 cut(s) 170
BssSI CACGAG 1 cut(s) 1215
Bst2BI CACGAG 1 cut(s) 1215
Bst2UI CCWGG 2 cut(s) 507, 859
Bst4CI ACNGT 5 cut(s) 44, 89, 265, 311, 833
BstACI GRCGYC 1 cut(s) 170
BstC8I GCNNGC 6 cut(s) 82, 468, 886, 1110, 1177, 1239
BstDEI CTNAG 9 cut(s) 135, 204, 222, 285, 321, 795, 816, 1059, 1164
BstF5I GGATG 7 cut(s) 107, 166, 392, 763, 777, 1033, 1105
BstKTI GATC 6 cut(s) 415, 440, 655, 934, 1075, 1080
BstMAI GTCTC 1 cut(s) 1122
BstMBI GATC 6 cut(s) 412, 437, 652, 931, 1072, 1077
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 3 cut(s) 15, 24, 148
BstNI CCWGG 2 cut(s) 507, 859
BstNSI RCATGY 1 cut(s) 615
BstPAI GACNNNNGTC 1 cut(s) 1134
BstSCI CCNGG 6 cut(s) 62, 98, 505, 688, 857, 1082
BstSFI CTRYAG 1 cut(s) 656
BstV1I GCAGC 3 cut(s) 1044, 1099, 1198
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
BstZI CGGCCG 1 cut(s) 78
Bsu36I CCTNAGG 1 cut(s) 204
BsuI GTATCC 1 cut(s) 1048
BsuRI GGCC 7 cut(s) 80, 98, 273, 391, 516, 862, 1108
BtrI CACGTC 1 cut(s) 1307
BtsCI GGATG 7 cut(s) 107, 166, 392, 763, 777, 1033, 1105
BtsIMutI CAGTG 3 cut(s) 261, 316, 449
Cac8I GCNNGC 6 cut(s) 82, 468, 886, 1110, 1177, 1239
CciI TCATGA 1 cut(s) 972
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 5 cut(s) 97, 515, 638, 1107, 1156
CseI GACGC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 241
CviAII CATG 8 cut(s) 217, 331, 479, 612, 973, 1051, 1096, 1124
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 9 cut(s) 135, 204, 222, 285, 321, 795, 816, 1059, 1164
DpnI GATC 6 cut(s) 414, 439, 654, 933, 1074, 1079
DpnII GATC 6 cut(s) 412, 437, 652, 931, 1072, 1077
DraI TTTAAA 1 cut(s) 1171
EaeI YGGCCR 3 cut(s) 78, 389, 860
EagI CGGCCG 1 cut(s) 78
EclXI CGGCCG 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 638, 1156
Eco52I CGGCCG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 204
EcoO109I RGGNCCY 2 cut(s) 638, 1156
EcoRII CCWGG 2 cut(s) 505, 857
EcoT22I ATGCAT 2 cut(s) 617, 907
FaeI CATG 8 cut(s) 220, 334, 482, 615, 976, 1054, 1099, 1127
FaqI GGGAC 1 cut(s) 651
FatI CATG 8 cut(s) 216, 330, 478, 611, 972, 1050, 1095, 1123
FauI CCCGC 2 cut(s) 1117, 1230
Fnu4HI GCNGC 6 cut(s) 7, 19, 78, 1033, 1088, 1212
FokI GGATG 7 cut(s) 94, 173, 399, 770, 784, 1040, 1112
Fsp4HI GCNGC 6 cut(s) 7, 19, 78, 1033, 1088, 1212
FspBI CTAG 2 cut(s) 776, 1223
GluI GCNGC 6 cut(s) 7, 19, 78, 1033, 1088, 1212
GsaI CCCAGC 1 cut(s) 493
GsuI CTGGAG 3 cut(s) 528, 868, 912
HaeIII GGCC 7 cut(s) 80, 98, 273, 391, 516, 862, 1108
HapII CCGG 7 cut(s) 24, 63, 81, 100, 689, 769, 1084
HgaI GACGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 8 cut(s) 220, 334, 482, 615, 976, 1054, 1099, 1127
HincII GTYRAC 2 cut(s) 576, 967
HindII GTYRAC 2 cut(s) 576, 967
HinfI GANTC 6 cut(s) 59, 137, 197, 572, 713, 820
HpaII CCGG 7 cut(s) 24, 63, 81, 100, 689, 769, 1084
HphI GGTGA 2 cut(s) 192, 1072
Hpy166II GTNNAC 3 cut(s) 548, 576, 967
Hpy188I TCNGA 7 cut(s) 798, 819, 936, 987, 1077, 1165, 1246
Hpy188III TCNNGA 7 cut(s) 295, 320, 410, 441, 650, 929, 973
Hpy8I GTNNAC 3 cut(s) 548, 576, 967
HpyAV CCTTC 5 cut(s) 112, 263, 397, 687, 1295
HpyCH4III ACNGT 5 cut(s) 44, 89, 265, 311, 833
HpyCH4IV ACGT 1 cut(s) 1306
HpyCH4V TGCA 7 cut(s) 334, 470, 590, 615, 658, 905, 1199
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 24, 148
HpyF3I CTNAG 9 cut(s) 135, 204, 222, 285, 321, 795, 816, 1059, 1164
HpySE526I ACGT 1 cut(s) 1306
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 8 cut(s) 220, 334, 482, 615, 976, 1054, 1099, 1127
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 6 cut(s) 412, 437, 652, 931, 1072, 1077
LmnI GCTCC 2 cut(s) 26, 541
Lsp1109I GCAGC 3 cut(s) 1044, 1099, 1198
LweI GCATC 4 cut(s) 599, 624, 762, 1250
MaeI CTAG 2 cut(s) 776, 1223
MaeII ACGT 1 cut(s) 1306
MaeIII GTNAC 5 cut(s) 44, 198, 305, 714, 739
MalI GATC 6 cut(s) 414, 439, 654, 933, 1074, 1079
MbiI CCGCTC 1 cut(s) 21
MboI GATC 6 cut(s) 412, 437, 652, 931, 1072, 1077
MboII GAAGA 5 cut(s) 96, 157, 193, 585, 1028
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 1 cut(s) 931
MlsI TGGCCA 2 cut(s) 391, 862
MluNI TGGCCA 2 cut(s) 391, 862
MlyI GAGTC 4 cut(s) 146, 206, 581, 722
MmeI TCCRAC 1 cut(s) 735
Mox20I TGGCCA 2 cut(s) 391, 862
Mph1103I ATGCAT 2 cut(s) 617, 907
MroNI GCCGGC 1 cut(s) 80
MroXI GAANNNNTTC 2 cut(s) 58, 185
MscI TGGCCA 2 cut(s) 391, 862
MseI TTAA 3 cut(s) 603, 1170, 1321
MslI CAYNNNNRTG 2 cut(s) 483, 1296
Msp20I TGGCCA 2 cut(s) 391, 862
MspI CCGG 7 cut(s) 24, 63, 81, 100, 689, 769, 1084
MspR9I CCNGG 6 cut(s) 64, 100, 507, 690, 859, 1084
MunI CAATTG 1 cut(s) 471
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 2 cut(s) 507, 859
MwoI GCNNNNNNNGC 3 cut(s) 15, 24, 148
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 4 cut(s) 64, 100, 690, 1084
NdeII GATC 6 cut(s) 412, 437, 652, 931, 1072, 1077
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 8 cut(s) 220, 334, 482, 615, 976, 1054, 1099, 1127
NlaIV GGNNCC 2 cut(s) 639, 1157
NmuCI GTSAC 5 cut(s) 44, 198, 305, 714, 739
NsiI ATGCAT 2 cut(s) 617, 907
NspI RCATGY 1 cut(s) 615
PagI TCATGA 1 cut(s) 972
PcsI WCGNNNNNNNCGW 1 cut(s) 829
PctI GAATGC 1 cut(s) 490
PdiI GCCGGC 1 cut(s) 82
PdmI GAANNNNTTC 2 cut(s) 58, 185
PfeI GAWTC 2 cut(s) 59, 820
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 6 cut(s) 8, 20, 79, 1034, 1089, 1213
PleI GAGTC 4 cut(s) 145, 205, 580, 721
PpsI GAGTC 4 cut(s) 145, 205, 580, 721
PpuMI RGGWCCY 2 cut(s) 638, 1156
PshAI GACNNNNGTC 1 cut(s) 1134
Psp5II RGGWCCY 2 cut(s) 638, 1156
Psp6I CCWGG 2 cut(s) 505, 857
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 2 cut(s) 505, 857
PspN4I GGNNCC 2 cut(s) 639, 1157
PspPI GGNCC 5 cut(s) 97, 515, 638, 1107, 1156
PspPPI RGGWCCY 2 cut(s) 638, 1156
PstI CTGCAG 1 cut(s) 660
PsuI RGATCY 1 cut(s) 931
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 2 cut(s) 483, 1296
SaqAI TTAA 3 cut(s) 603, 1170, 1321
SatI GCNGC 6 cut(s) 7, 19, 78, 1033, 1088, 1212
Sau3AI GATC 6 cut(s) 412, 437, 652, 931, 1072, 1077
Sau96I GGNCC 5 cut(s) 97, 515, 638, 1107, 1156
SchI GAGTC 4 cut(s) 146, 206, 581, 722
ScrFI CCNGG 6 cut(s) 64, 100, 507, 690, 859, 1084
SfaNI GCATC 4 cut(s) 599, 624, 762, 1250
SfcI CTRYAG 1 cut(s) 656
SinI GGWCC 2 cut(s) 638, 1156
SmiMI CAYNNNNRTG 2 cut(s) 483, 1296
SmlI CTYRAG 2 cut(s) 381, 642
SmoI CTYRAG 2 cut(s) 381, 642
SsiI CCGC 7 cut(s) 7, 19, 49, 77, 733, 1110, 1237
SspMI CTAG 2 cut(s) 776, 1223
StyD4I CCNGG 6 cut(s) 62, 98, 505, 688, 857, 1082
TaaI ACNGT 5 cut(s) 44, 89, 265, 311, 833
TaiI ACGT 1 cut(s) 1309
TatI WGTACW 1 cut(s) 240
TauI GCSGC 3 cut(s) 9, 21, 80
TfiI GAWTC 2 cut(s) 59, 820
Tru1I TTAA 3 cut(s) 603, 1170, 1321
Tru9I TTAA 3 cut(s) 603, 1170, 1321
TscAI CASTG 3 cut(s) 268, 316, 456
TseFI GTSAC 5 cut(s) 44, 198, 305, 714, 739
TseI GCWGC 3 cut(s) 1032, 1087, 1211
Tsp45I GTSAC 5 cut(s) 44, 198, 305, 714, 739
TspDTI ATGAA 4 cut(s) 96, 1039, 1112, 1280
TspGWI ACGGA 2 cut(s) 265, 293
TspRI CASTG 3 cut(s) 268, 316, 456
VpaK11BI GGWCC 2 cut(s) 638, 1156
XapI RAATTY 3 cut(s) 184, 561, 581
XceI RCATGY 1 cut(s) 615
XmnI GAANNNNTTC 2 cut(s) 58, 185
XspI CTAG 2 cut(s) 776, 1223
Zsp2I ATGCAT 2 cut(s) 617, 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.