DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55150 AT1G55150 |
| fragaria_vesca | FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 |
| malus_domestica | MD09G1194200.v1.1 MD17G1174700.v1.1 |
| prunus_persica | Prupe.3G019300_v2.0.a1 Prupe.3G019300_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 |
| pyrus_communis | pycom09g11070 |
| rosa_chinensis | RchiOBHm_Chr2g0142931 |
| rosa_laevigata | RLG00000019997 |
| rosa_multiflora | Rmu_sc0028648.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00102220 Rroxscaffold_2G00103260 |
| rosa_rugosa | Rorug02G0377000 Rorug02G0377100 Rorug02G0377200 |
| rosa_samantha | Rh2AG430000 Rh2BG439000 Rh2CG362000 Rh2CG415500 Rh2DG449000 |
| rosa_wichuraiana | Rw2G035130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 21 |
| AciI | CCGC | 7 cut(s) | 7, 19, 49, 77, 733, 1110, 1237 |
| AclWI | GGATC | 1 cut(s) | 445 |
| AcoI | YGGCCR | 3 cut(s) | 78, 389, 860 |
| AcsI | RAATTY | 3 cut(s) | 184, 561, 581 |
| AcyI | GRCGYC | 1 cut(s) | 170 |
| AfaI | GTAC | 1 cut(s) | 242 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 512 |
| AgsI | TTSAA | 8 cut(s) | 269, 362, 377, 403, 560, 566, 875, 951 |
| AjiI | CACGTC | 1 cut(s) | 1307 |
| AjnI | CCWGG | 2 cut(s) | 505, 857 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 140, 172 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 630, 662 |
| AluBI | AGCT | 7 cut(s) | 151, 300, 350, 380, 536, 1090, 1175 |
| AluI | AGCT | 7 cut(s) | 151, 300, 350, 380, 536, 1090, 1175 |
| Alw26I | GTCTC | 1 cut(s) | 1122 |
| AlwI | GGATC | 1 cut(s) | 445 |
| AoxI | GGCC | 7 cut(s) | 78, 96, 271, 389, 514, 860, 1106 |
| ApeKI | GCWGC | 3 cut(s) | 1032, 1087, 1211 |
| ApoI | RAATTY | 3 cut(s) | 184, 561, 581 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 630, 662 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 58, 185 |
| AspS9I | GGNCC | 5 cut(s) | 97, 515, 638, 1107, 1156 |
| AsuC2I | CCSGG | 4 cut(s) | 64, 100, 690, 1084 |
| AsuHPI | GGTGA | 2 cut(s) | 192, 1072 |
| AvaII | GGWCC | 2 cut(s) | 638, 1156 |
| AxyI | CCTNAGG | 1 cut(s) | 204 |
| BalI | TGGCCA | 2 cut(s) | 391, 862 |
| BauI | CACGAG | 1 cut(s) | 1215 |
| BbsI | GAAGAC | 1 cut(s) | 96 |
| BbvI | GCAGC | 3 cut(s) | 1044, 1099, 1198 |
| BccI | CCATC | 7 cut(s) | 122, 155, 299, 381, 506, 1022, 1094 |
| BceAI | ACGGC | 1 cut(s) | 258 |
| BciT130I | CCWGG | 2 cut(s) | 507, 859 |
| BciVI | GTATCC | 1 cut(s) | 1048 |
| BcnI | CCSGG | 4 cut(s) | 64, 100, 690, 1084 |
| BcoDI | GTCTC | 1 cut(s) | 1122 |
| BfaI | CTAG | 2 cut(s) | 776, 1223 |
| BfmI | CTRYAG | 1 cut(s) | 656 |
| BfuI | GTATCC | 1 cut(s) | 1048 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 24 |
| BglII | AGATCT | 1 cut(s) | 931 |
| BisI | GCNGC | 6 cut(s) | 7, 19, 78, 1033, 1088, 1212 |
| BlsI | GCNGC | 6 cut(s) | 8, 20, 79, 1034, 1089, 1213 |
| Bme1390I | CCNGG | 6 cut(s) | 64, 100, 507, 690, 859, 1084 |
| Bme18I | GGWCC | 2 cut(s) | 638, 1156 |
| BmgBI | CACGTC | 1 cut(s) | 1307 |
| BmgT120I | GGNCC | 5 cut(s) | 97, 515, 638, 1107, 1156 |
| BmiI | GGNNCC | 2 cut(s) | 639, 1157 |
| BmrFI | CCNGG | 6 cut(s) | 64, 100, 507, 690, 859, 1084 |
| BmsI | GCATC | 4 cut(s) | 599, 624, 762, 1250 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1134 |
| BpiI | GAAGAC | 1 cut(s) | 96 |
| BpmI | CTGGAG | 3 cut(s) | 528, 868, 912 |
| Bpu10I | CCTNAGC | 1 cut(s) | 285 |
| BpuEI | CTTGAG | 2 cut(s) | 366, 627 |
| BpuMI | CCSGG | 4 cut(s) | 64, 100, 690, 1084 |
| BsaHI | GRCGYC | 1 cut(s) | 170 |
| BsaWI | WCCGGW | 1 cut(s) | 768 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 5, 20, 35, 50 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 512 |
| Bse118I | RCCGGY | 1 cut(s) | 80 |
| Bse1I | ACTGG | 4 cut(s) | 111, 456, 851, 885 |
| Bse21I | CCTNAGG | 1 cut(s) | 204 |
| BseBI | CCWGG | 2 cut(s) | 507, 859 |
| BseGI | GGATG | 7 cut(s) | 107, 166, 392, 763, 777, 1033, 1105 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 512 |
| BseMII | CTCAG | 7 cut(s) | 126, 195, 213, 312, 809, 830, 1155 |
| BseNI | ACTGG | 4 cut(s) | 111, 456, 851, 885 |
| BseRI | GAGGAG | 1 cut(s) | 251 |
| BseX3I | CGGCCG | 1 cut(s) | 78 |
| BseXI | GCAGC | 3 cut(s) | 1044, 1099, 1198 |
| BseYI | CCCAGC | 1 cut(s) | 489 |
| Bsh1285I | CGRYCG | 1 cut(s) | 81 |
| BshFI | GGCC | 7 cut(s) | 80, 98, 273, 391, 516, 862, 1108 |
| BsiEI | CGRYCG | 1 cut(s) | 81 |
| BsiSI | CCGG | 7 cut(s) | 24, 63, 81, 100, 689, 769, 1084 |
| BslFI | GGGAC | 1 cut(s) | 651 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 512 |
| BsmAI | GTCTC | 1 cut(s) | 1122 |
| BsmFI | GGGAC | 1 cut(s) | 651 |
| BsmI | GAATGC | 1 cut(s) | 490 |
| BsnI | GGCC | 7 cut(s) | 80, 98, 273, 391, 516, 862, 1108 |
| Bsp143I | GATC | 6 cut(s) | 412, 437, 652, 931, 1072, 1077 |
| BspACI | CCGC | 7 cut(s) | 7, 19, 49, 77, 733, 1110, 1237 |
| BspANI | GGCC | 7 cut(s) | 80, 98, 273, 391, 516, 862, 1108 |
| BspCNI | CTCAG | 7 cut(s) | 127, 196, 214, 313, 808, 829, 1156 |
| BspHI | TCATGA | 1 cut(s) | 972 |
| BspLI | GGNNCC | 2 cut(s) | 639, 1157 |
| BspMAI | CTGCAG | 1 cut(s) | 660 |
| BspPI | GGATC | 1 cut(s) | 445 |
| BsrBI | CCGCTC | 1 cut(s) | 21 |
| BsrFI | RCCGGY | 1 cut(s) | 80 |
| BsrI | ACTGG | 4 cut(s) | 111, 456, 851, 885 |
| BssAI | RCCGGY | 1 cut(s) | 80 |
| BssMI | GATC | 6 cut(s) | 412, 437, 652, 931, 1072, 1077 |
| BssNI | GRCGYC | 1 cut(s) | 170 |
| BssSI | CACGAG | 1 cut(s) | 1215 |
| Bst2BI | CACGAG | 1 cut(s) | 1215 |
| Bst2UI | CCWGG | 2 cut(s) | 507, 859 |
| Bst4CI | ACNGT | 5 cut(s) | 44, 89, 265, 311, 833 |
| BstACI | GRCGYC | 1 cut(s) | 170 |
| BstC8I | GCNNGC | 6 cut(s) | 82, 468, 886, 1110, 1177, 1239 |
| BstDEI | CTNAG | 9 cut(s) | 135, 204, 222, 285, 321, 795, 816, 1059, 1164 |
| BstF5I | GGATG | 7 cut(s) | 107, 166, 392, 763, 777, 1033, 1105 |
| BstKTI | GATC | 6 cut(s) | 415, 440, 655, 934, 1075, 1080 |
| BstMAI | GTCTC | 1 cut(s) | 1122 |
| BstMBI | GATC | 6 cut(s) | 412, 437, 652, 931, 1072, 1077 |
| BstMCI | CGRYCG | 1 cut(s) | 81 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 15, 24, 148 |
| BstNI | CCWGG | 2 cut(s) | 507, 859 |
| BstNSI | RCATGY | 1 cut(s) | 615 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1134 |
| BstSCI | CCNGG | 6 cut(s) | 62, 98, 505, 688, 857, 1082 |
| BstSFI | CTRYAG | 1 cut(s) | 656 |
| BstV1I | GCAGC | 3 cut(s) | 1044, 1099, 1198 |
| BstV2I | GAAGAC | 1 cut(s) | 96 |
| BstX2I | RGATCY | 1 cut(s) | 931 |
| BstYI | RGATCY | 1 cut(s) | 931 |
| BstZI | CGGCCG | 1 cut(s) | 78 |
| Bsu36I | CCTNAGG | 1 cut(s) | 204 |
| BsuI | GTATCC | 1 cut(s) | 1048 |
| BsuRI | GGCC | 7 cut(s) | 80, 98, 273, 391, 516, 862, 1108 |
| BtrI | CACGTC | 1 cut(s) | 1307 |
| BtsCI | GGATG | 7 cut(s) | 107, 166, 392, 763, 777, 1033, 1105 |
| BtsIMutI | CAGTG | 3 cut(s) | 261, 316, 449 |
| Cac8I | GCNNGC | 6 cut(s) | 82, 468, 886, 1110, 1177, 1239 |
| CciI | TCATGA | 1 cut(s) | 972 |
| Cfr10I | RCCGGY | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 5 cut(s) | 97, 515, 638, 1107, 1156 |
| CseI | GACGC | 1 cut(s) | 178 |
| Csp6I | GTAC | 1 cut(s) | 241 |
| CviAII | CATG | 8 cut(s) | 217, 331, 479, 612, 973, 1051, 1096, 1124 |
| CviQI | GTAC | 1 cut(s) | 241 |
| DdeI | CTNAG | 9 cut(s) | 135, 204, 222, 285, 321, 795, 816, 1059, 1164 |
| DpnI | GATC | 6 cut(s) | 414, 439, 654, 933, 1074, 1079 |
| DpnII | GATC | 6 cut(s) | 412, 437, 652, 931, 1072, 1077 |
| DraI | TTTAAA | 1 cut(s) | 1171 |
| EaeI | YGGCCR | 3 cut(s) | 78, 389, 860 |
| EagI | CGGCCG | 1 cut(s) | 78 |
| EclXI | CGGCCG | 1 cut(s) | 78 |
| Eco47I | GGWCC | 2 cut(s) | 638, 1156 |
| Eco52I | CGGCCG | 1 cut(s) | 78 |
| Eco81I | CCTNAGG | 1 cut(s) | 204 |
| EcoO109I | RGGNCCY | 2 cut(s) | 638, 1156 |
| EcoRII | CCWGG | 2 cut(s) | 505, 857 |
| EcoT22I | ATGCAT | 2 cut(s) | 617, 907 |
| FaeI | CATG | 8 cut(s) | 220, 334, 482, 615, 976, 1054, 1099, 1127 |
| FaqI | GGGAC | 1 cut(s) | 651 |
| FatI | CATG | 8 cut(s) | 216, 330, 478, 611, 972, 1050, 1095, 1123 |
| FauI | CCCGC | 2 cut(s) | 1117, 1230 |
| Fnu4HI | GCNGC | 6 cut(s) | 7, 19, 78, 1033, 1088, 1212 |
| FokI | GGATG | 7 cut(s) | 94, 173, 399, 770, 784, 1040, 1112 |
| Fsp4HI | GCNGC | 6 cut(s) | 7, 19, 78, 1033, 1088, 1212 |
| FspBI | CTAG | 2 cut(s) | 776, 1223 |
| GluI | GCNGC | 6 cut(s) | 7, 19, 78, 1033, 1088, 1212 |
| GsaI | CCCAGC | 1 cut(s) | 493 |
| GsuI | CTGGAG | 3 cut(s) | 528, 868, 912 |
| HaeIII | GGCC | 7 cut(s) | 80, 98, 273, 391, 516, 862, 1108 |
| HapII | CCGG | 7 cut(s) | 24, 63, 81, 100, 689, 769, 1084 |
| HgaI | GACGC | 1 cut(s) | 178 |
| Hin1I | GRCGYC | 1 cut(s) | 170 |
| Hin1II | CATG | 8 cut(s) | 220, 334, 482, 615, 976, 1054, 1099, 1127 |
| HincII | GTYRAC | 2 cut(s) | 576, 967 |
| HindII | GTYRAC | 2 cut(s) | 576, 967 |
| HinfI | GANTC | 6 cut(s) | 59, 137, 197, 572, 713, 820 |
| HpaII | CCGG | 7 cut(s) | 24, 63, 81, 100, 689, 769, 1084 |
| HphI | GGTGA | 2 cut(s) | 192, 1072 |
| Hpy166II | GTNNAC | 3 cut(s) | 548, 576, 967 |
| Hpy188I | TCNGA | 7 cut(s) | 798, 819, 936, 987, 1077, 1165, 1246 |
| Hpy188III | TCNNGA | 7 cut(s) | 295, 320, 410, 441, 650, 929, 973 |
| Hpy8I | GTNNAC | 3 cut(s) | 548, 576, 967 |
| HpyAV | CCTTC | 5 cut(s) | 112, 263, 397, 687, 1295 |
| HpyCH4III | ACNGT | 5 cut(s) | 44, 89, 265, 311, 833 |
| HpyCH4IV | ACGT | 1 cut(s) | 1306 |
| HpyCH4V | TGCA | 7 cut(s) | 334, 470, 590, 615, 658, 905, 1199 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 15, 24, 148 |
| HpyF3I | CTNAG | 9 cut(s) | 135, 204, 222, 285, 321, 795, 816, 1059, 1164 |
| HpySE526I | ACGT | 1 cut(s) | 1306 |
| Hsp92I | GRCGYC | 1 cut(s) | 170 |
| Hsp92II | CATG | 8 cut(s) | 220, 334, 482, 615, 976, 1054, 1099, 1127 |
| KroI | GCCGGC | 1 cut(s) | 80 |
| KroNI | GCCGGC | 1 cut(s) | 82 |
| Kzo9I | GATC | 6 cut(s) | 412, 437, 652, 931, 1072, 1077 |
| LmnI | GCTCC | 2 cut(s) | 26, 541 |
| Lsp1109I | GCAGC | 3 cut(s) | 1044, 1099, 1198 |
| LweI | GCATC | 4 cut(s) | 599, 624, 762, 1250 |
| MaeI | CTAG | 2 cut(s) | 776, 1223 |
| MaeII | ACGT | 1 cut(s) | 1306 |
| MaeIII | GTNAC | 5 cut(s) | 44, 198, 305, 714, 739 |
| MalI | GATC | 6 cut(s) | 414, 439, 654, 933, 1074, 1079 |
| MbiI | CCGCTC | 1 cut(s) | 21 |
| MboI | GATC | 6 cut(s) | 412, 437, 652, 931, 1072, 1077 |
| MboII | GAAGA | 5 cut(s) | 96, 157, 193, 585, 1028 |
| MfeI | CAATTG | 1 cut(s) | 471 |
| MflI | RGATCY | 1 cut(s) | 931 |
| MlsI | TGGCCA | 2 cut(s) | 391, 862 |
| MluNI | TGGCCA | 2 cut(s) | 391, 862 |
| MlyI | GAGTC | 4 cut(s) | 146, 206, 581, 722 |
| MmeI | TCCRAC | 1 cut(s) | 735 |
| Mox20I | TGGCCA | 2 cut(s) | 391, 862 |
| Mph1103I | ATGCAT | 2 cut(s) | 617, 907 |
| MroNI | GCCGGC | 1 cut(s) | 80 |
| MroXI | GAANNNNTTC | 2 cut(s) | 58, 185 |
| MscI | TGGCCA | 2 cut(s) | 391, 862 |
| MseI | TTAA | 3 cut(s) | 603, 1170, 1321 |
| MslI | CAYNNNNRTG | 2 cut(s) | 483, 1296 |
| Msp20I | TGGCCA | 2 cut(s) | 391, 862 |
| MspI | CCGG | 7 cut(s) | 24, 63, 81, 100, 689, 769, 1084 |
| MspR9I | CCNGG | 6 cut(s) | 64, 100, 507, 690, 859, 1084 |
| MunI | CAATTG | 1 cut(s) | 471 |
| Mva1269I | GAATGC | 1 cut(s) | 490 |
| MvaI | CCWGG | 2 cut(s) | 507, 859 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 15, 24, 148 |
| NaeI | GCCGGC | 1 cut(s) | 82 |
| NciI | CCSGG | 4 cut(s) | 64, 100, 690, 1084 |
| NdeII | GATC | 6 cut(s) | 412, 437, 652, 931, 1072, 1077 |
| NgoMIV | GCCGGC | 1 cut(s) | 80 |
| NlaIII | CATG | 8 cut(s) | 220, 334, 482, 615, 976, 1054, 1099, 1127 |
| NlaIV | GGNNCC | 2 cut(s) | 639, 1157 |
| NmuCI | GTSAC | 5 cut(s) | 44, 198, 305, 714, 739 |
| NsiI | ATGCAT | 2 cut(s) | 617, 907 |
| NspI | RCATGY | 1 cut(s) | 615 |
| PagI | TCATGA | 1 cut(s) | 972 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 829 |
| PctI | GAATGC | 1 cut(s) | 490 |
| PdiI | GCCGGC | 1 cut(s) | 82 |
| PdmI | GAANNNNTTC | 2 cut(s) | 58, 185 |
| PfeI | GAWTC | 2 cut(s) | 59, 820 |
| PfoI | TCCNGGA | 1 cut(s) | 505 |
| PkrI | GCNGC | 6 cut(s) | 8, 20, 79, 1034, 1089, 1213 |
| PleI | GAGTC | 4 cut(s) | 145, 205, 580, 721 |
| PpsI | GAGTC | 4 cut(s) | 145, 205, 580, 721 |
| PpuMI | RGGWCCY | 2 cut(s) | 638, 1156 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1134 |
| Psp5II | RGGWCCY | 2 cut(s) | 638, 1156 |
| Psp6I | CCWGG | 2 cut(s) | 505, 857 |
| PspFI | CCCAGC | 1 cut(s) | 489 |
| PspGI | CCWGG | 2 cut(s) | 505, 857 |
| PspN4I | GGNNCC | 2 cut(s) | 639, 1157 |
| PspPI | GGNCC | 5 cut(s) | 97, 515, 638, 1107, 1156 |
| PspPPI | RGGWCCY | 2 cut(s) | 638, 1156 |
| PstI | CTGCAG | 1 cut(s) | 660 |
| PsuI | RGATCY | 1 cut(s) | 931 |
| RsaI | GTAC | 1 cut(s) | 242 |
| RsaNI | GTAC | 1 cut(s) | 241 |
| RseI | CAYNNNNRTG | 2 cut(s) | 483, 1296 |
| SaqAI | TTAA | 3 cut(s) | 603, 1170, 1321 |
| SatI | GCNGC | 6 cut(s) | 7, 19, 78, 1033, 1088, 1212 |
| Sau3AI | GATC | 6 cut(s) | 412, 437, 652, 931, 1072, 1077 |
| Sau96I | GGNCC | 5 cut(s) | 97, 515, 638, 1107, 1156 |
| SchI | GAGTC | 4 cut(s) | 146, 206, 581, 722 |
| ScrFI | CCNGG | 6 cut(s) | 64, 100, 507, 690, 859, 1084 |
| SfaNI | GCATC | 4 cut(s) | 599, 624, 762, 1250 |
| SfcI | CTRYAG | 1 cut(s) | 656 |
| SinI | GGWCC | 2 cut(s) | 638, 1156 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 483, 1296 |
| SmlI | CTYRAG | 2 cut(s) | 381, 642 |
| SmoI | CTYRAG | 2 cut(s) | 381, 642 |
| SsiI | CCGC | 7 cut(s) | 7, 19, 49, 77, 733, 1110, 1237 |
| SspMI | CTAG | 2 cut(s) | 776, 1223 |
| StyD4I | CCNGG | 6 cut(s) | 62, 98, 505, 688, 857, 1082 |
| TaaI | ACNGT | 5 cut(s) | 44, 89, 265, 311, 833 |
| TaiI | ACGT | 1 cut(s) | 1309 |
| TatI | WGTACW | 1 cut(s) | 240 |
| TauI | GCSGC | 3 cut(s) | 9, 21, 80 |
| TfiI | GAWTC | 2 cut(s) | 59, 820 |
| Tru1I | TTAA | 3 cut(s) | 603, 1170, 1321 |
| Tru9I | TTAA | 3 cut(s) | 603, 1170, 1321 |
| TscAI | CASTG | 3 cut(s) | 268, 316, 456 |
| TseFI | GTSAC | 5 cut(s) | 44, 198, 305, 714, 739 |
| TseI | GCWGC | 3 cut(s) | 1032, 1087, 1211 |
| Tsp45I | GTSAC | 5 cut(s) | 44, 198, 305, 714, 739 |
| TspDTI | ATGAA | 4 cut(s) | 96, 1039, 1112, 1280 |
| TspGWI | ACGGA | 2 cut(s) | 265, 293 |
| TspRI | CASTG | 3 cut(s) | 268, 316, 456 |
| VpaK11BI | GGWCC | 2 cut(s) | 638, 1156 |
| XapI | RAATTY | 3 cut(s) | 184, 561, 581 |
| XceI | RCATGY | 1 cut(s) | 615 |
| XmnI | GAANNNNTTC | 2 cut(s) | 58, 185 |
| XspI | CTAG | 2 cut(s) | 776, 1223 |
| Zsp2I | ATGCAT | 2 cut(s) | 617, 907 |