Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004596

Physical Location & Seq

Genomic Coordinates Reverse (-)

56739340 .. 56747753

Gene Structure 8414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG415500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGACGGAGAGGGAGGTTGAGGAGTATAGGAAACGGAGGGAAATTACTGTTGAAGGCCGCGATGTTCCAAAGCCCATCAAGAGCTTCCATGACATTGGGTTTCCCGAGTATGTCATGCAAGAAATCACAAAAGCTGGATTTGTTGAACCTACACCAATTCAAGCTCAAGGATGGCCAATGGCTTTGAAGGGACGTGATCTTATTGGTATTGCTGAAACAGGATCAGGAAAGACATTAGCTTACCTGCTGCCTGCAATTGTCCATGTCAATGCCCAGCCAATTCTATCCCCTGGAGACGGCCCGATAGTATTAGTTTTAGCTCCTACCCGTGAACTTGCCGTTCAAATCCAACAAGAGTCTACTAAATTTGGTGCATCTTCAAAAATTAAAAGCACATGCATCTATGGTGGAGTTCCGAAGGGACCTCAAGTTCGTGATCTGCAGAAAGGAGTTGAAATTGTAATTGCTACACCGGGAAGGTTGATTGATATGTTAGAGTCGCATAATACAAACTTGCGAAGGGTCACATATCTTGTGTTGGATGAGGCTGATCGGATGCTAGACATGGGGTTTGAGCCTCAGATACGAAAGATTGTTTCTCAGATTCGCCCAGACCGTCAAACATTATACTGGAGTGCTACATGGCCGAAGGAGGTTGAACAACTGGCGAGGCAGTTCCTTTACAATGCATACAAAGTAATAATAGGTTCTCCAGATCTGAAAGCCAACCACTCAATTCGCCAAATTGTTGACATCATTACTGAAAATCAGAAATATAACAAATTGGTAAAGTTGCTGGAGGATATTATGGATGGCAGCAGAATACTGATATTCATGGATACTAAGAAAGGTTGCGATCAGATCACTCGGCAGCTTCGCATGGATGGTTGGCCCGCCCTCTCGATTCATGGAGACAAAAGTCAAGCAGAAAGGGATTGGGTCCTCTCTGAGTTTAAAGCTGGCAAAAGCCCCATAATGACTGCAACAGATGTTGCTGCTCGTGGTCTAGGTATGGGAAGGAATTTCTTTTTAGCTTGTGAGAATACTTGGCAGGAATTCTTATTTGGCTATGTTCTAAGAGTTATTTGCTTGATCATACACATTAGTATTGCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

372

Amino Acids

41.96

Weight (kDa)

8.52

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	51 - 221	2e-50	DEAD/DEAH box helicase
ResIII	PF04851	70 - 214	3.3e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	258 - 336	5.2e-15	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55150 AT1G55150
fragaria_vesca	FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220
malus_domestica	MD09G1194200.v1.1 MD17G1174700.v1.1
prunus_persica	Prupe.3G019300_v2.0.a1 Prupe.3G019300_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1
pyrus_communis	pycom09g11070
rosa_chinensis	RchiOBHm_Chr2g0142931
rosa_laevigata	RLG00000019997
rosa_multiflora	Rmu_sc0028648.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102220 Rroxscaffold_2G00103260
rosa_rugosa	Rorug02G0377000 Rorug02G0377100 Rorug02G0377200
rosa_samantha	Rh2AG430000 Rh2BG439000 Rh2CG362000 Rh2CG415500 Rh2DG449000
rosa_wichuraiana	Rw2G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	1 cut(s)	60
AciI	CCGC	2 cut(s)	58, 894
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	2 cut(s)	173, 644
AcsI	RAATTY	3 cut(s)	365, 1021, 1055
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	8 cut(s)	53, 146, 161, 187, 344, 381, 455, 659
AjiI	CACGTC	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	1047, 1079
AloI	GAACNNNNNNTCC	2 cut(s)	414, 446
AluBI	AGCT	8 cut(s)	84, 134, 164, 239, 320, 874, 959, 1034
AluI	AGCT	8 cut(s)	84, 134, 164, 239, 320, 874, 959, 1034
Alw26I	GTCTC	2 cut(s)	288, 906
AlwI	GGATC	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	5 cut(s)	55, 173, 298, 644, 890
ApeKI	GCWGC	4 cut(s)	247, 816, 871, 995
ApoI	RAATTY	3 cut(s)	365, 1021, 1055
ArsI	GACNNNNNNTTYG	4 cut(s)	414, 446, 554, 586
AspS9I	GGNCC	4 cut(s)	299, 422, 891, 940
AsuC2I	CCSGG	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	422, 940
BalI	TGGCCA	1 cut(s)	175
BauI	CACGAG	1 cut(s)	999
BbvI	GCAGC	4 cut(s)	234, 828, 883, 982
BccI	CCATC	4 cut(s)	83, 165, 806, 878
BceAI	ACGGC	2 cut(s)	313, 323
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	832
BclI	TGATCA	1 cut(s)	1092
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	288, 906
BfaI	CTAG	2 cut(s)	560, 1007
BfmI	CTRYAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	252
BfuI	GTATCC	1 cut(s)	832
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	5 cut(s)	58, 248, 817, 872, 996
BlsI	GCNGC	5 cut(s)	59, 249, 818, 873, 997
Bme1390I	CCNGG	2 cut(s)	291, 474
Bme18I	GGWCC	2 cut(s)	422, 940
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	194
BmgT120I	GGNCC	4 cut(s)	299, 422, 891, 940
BmiI	GGNNCC	2 cut(s)	423, 941
BmrFI	CCNGG	2 cut(s)	291, 474
BmsI	GCATC	3 cut(s)	383, 408, 546
BoxI	GACNNNNGTC	1 cut(s)	918
BpmI	CTGGAG	4 cut(s)	312, 652, 696, 818
BpuEI	CTTGAG	2 cut(s)	150, 411
BpuMI	CCSGG	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	2 cut(s)	635, 669
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	5 cut(s)	176, 547, 561, 817, 889
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	3 cut(s)	593, 614, 939
BseNI	ACTGG	2 cut(s)	635, 669
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	4 cut(s)	234, 828, 883, 982
BseYI	CCCAGC	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	5 cut(s)	57, 175, 300, 646, 892
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	473
BslFI	GGGAC	2 cut(s)	204, 435
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	288, 906
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	2 cut(s)	204, 435
BsnI	GGCC	5 cut(s)	57, 175, 300, 646, 892
BsoBI	CYCGRG	1 cut(s)	104
Bsp143I	GATC	8 cut(s)	196, 221, 436, 550, 715, 856, 861, 1092
BspACI	CCGC	2 cut(s)	58, 894
BspANI	GGCC	5 cut(s)	57, 175, 300, 646, 892
BspCNI	CTCAG	3 cut(s)	592, 613, 940
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	423, 941
BspMAI	CTGCAG	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	635, 669
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	8 cut(s)	196, 221, 436, 550, 715, 856, 861, 1092
BssSI	CACGAG	1 cut(s)	999
Bst2BI	CACGAG	1 cut(s)	999
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	49, 617
BstC8I	GCNNGC	3 cut(s)	252, 894, 961
BstDEI	CTNAG	5 cut(s)	579, 600, 843, 948, 1076
BstF5I	GGATG	5 cut(s)	176, 547, 561, 817, 889
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	8 cut(s)	199, 224, 439, 553, 718, 859, 864, 1095
BstMAI	GTCTC	2 cut(s)	288, 906
BstMBI	GATC	8 cut(s)	196, 221, 436, 550, 715, 856, 861, 1092
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	399
BstPAI	GACNNNNGTC	1 cut(s)	918
BstSCI	CCNGG	2 cut(s)	289, 472
BstSFI	CTRYAG	1 cut(s)	440
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	234, 828, 883, 982
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	715
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	5 cut(s)	57, 175, 300, 646, 892
BtgZI	GCGATG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	194
BtsCI	GGATG	5 cut(s)	176, 547, 561, 817, 889
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	3 cut(s)	252, 894, 961
Cfr13I	GGNCC	4 cut(s)	299, 422, 891, 940
CviAII	CATG	9 cut(s)	89, 115, 263, 396, 565, 642, 835, 880, 908
DdeI	CTNAG	5 cut(s)	579, 600, 843, 948, 1076
DpnI	GATC	8 cut(s)	198, 223, 438, 552, 717, 858, 863, 1094
DpnII	GATC	8 cut(s)	196, 221, 436, 550, 715, 856, 861, 1092
DraI	TTTAAA	1 cut(s)	955
EaeI	YGGCCR	2 cut(s)	173, 644
Eco47I	GGWCC	2 cut(s)	422, 940
Eco88I	CYCGRG	1 cut(s)	104
EcoO109I	RGGNCCY	2 cut(s)	422, 940
EcoRI	GAATTC	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	289
EcoT22I	ATGCAT	2 cut(s)	401, 691
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	9 cut(s)	92, 118, 266, 399, 568, 645, 838, 883, 911
FaqI	GGGAC	2 cut(s)	204, 435
FatI	CATG	9 cut(s)	88, 114, 262, 395, 564, 641, 834, 879, 907
FauI	CCCGC	1 cut(s)	901
FbaI	TGATCA	1 cut(s)	1092
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	5 cut(s)	58, 248, 817, 872, 996
FokI	GGATG	5 cut(s)	183, 554, 568, 824, 896
Fsp4HI	GCNGC	5 cut(s)	58, 248, 817, 872, 996
FspBI	CTAG	2 cut(s)	560, 1007
GluI	GCNGC	5 cut(s)	58, 248, 817, 872, 996
GsaI	CCCAGC	1 cut(s)	277
GsuI	CTGGAG	4 cut(s)	312, 652, 696, 818
HaeIII	GGCC	5 cut(s)	57, 175, 300, 646, 892
HapII	CCGG	1 cut(s)	473
Hin1II	CATG	9 cut(s)	92, 118, 266, 399, 568, 645, 838, 883, 911
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HinfI	GANTC	4 cut(s)	356, 497, 604, 904
HpaII	CCGG	1 cut(s)	473
Hpy166II	GTNNAC	3 cut(s)	332, 360, 751
Hpy188I	TCNGA	8 cut(s)	417, 555, 582, 603, 720, 771, 861, 949
Hpy188III	TCNNGA	6 cut(s)	79, 104, 225, 434, 713, 901
Hpy8I	GTNNAC	3 cut(s)	332, 360, 751
HpyAV	CCTTC	7 cut(s)	47, 181, 412, 471, 513, 643, 1011
HpyCH4III	ACNGT	2 cut(s)	49, 617
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	7 cut(s)	118, 254, 374, 399, 442, 689, 983
HpyF3I	CTNAG	5 cut(s)	579, 600, 843, 948, 1076
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	9 cut(s)	92, 118, 266, 399, 568, 645, 838, 883, 911
Ksp22I	TGATCA	1 cut(s)	1092
Kzo9I	GATC	8 cut(s)	196, 221, 436, 550, 715, 856, 861, 1092
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	4 cut(s)	234, 828, 883, 982
LweI	GCATC	3 cut(s)	383, 408, 546
MaeI	CTAG	2 cut(s)	560, 1007
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	8 cut(s)	198, 223, 438, 552, 717, 858, 863, 1094
MboI	GATC	8 cut(s)	196, 221, 436, 550, 715, 856, 861, 1092
MboII	GAAGA	1 cut(s)	369
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	1 cut(s)	715
MlsI	TGGCCA	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	2 cut(s)	365, 506
MmeI	TCCRAC	2 cut(s)	373, 519
Mox20I	TGGCCA	1 cut(s)	175
Mph1103I	ATGCAT	2 cut(s)	401, 691
MscI	TGGCCA	1 cut(s)	175
MseI	TTAA	3 cut(s)	387, 954, 1117
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	175
MspI	CCGG	1 cut(s)	473
MspR9I	CCNGG	2 cut(s)	291, 474
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	60
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	8 cut(s)	196, 221, 436, 550, 715, 856, 861, 1092
NlaIII	CATG	9 cut(s)	92, 118, 266, 399, 568, 645, 838, 883, 911
NlaIV	GGNNCC	2 cut(s)	423, 941
NmeAIII	GCCGAG	1 cut(s)	847
NmuCI	GTSAC	1 cut(s)	523
NsiI	ATGCAT	2 cut(s)	401, 691
NspI	RCATGY	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	604, 904
PkrI	GCNGC	5 cut(s)	59, 249, 818, 873, 997
PleI	GAGTC	2 cut(s)	364, 505
PpsI	GAGTC	2 cut(s)	364, 505
PpuMI	RGGWCCY	2 cut(s)	422, 940
PshAI	GACNNNNGTC	1 cut(s)	918
Psp5II	RGGWCCY	2 cut(s)	422, 940
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	423, 941
PspPI	GGNCC	4 cut(s)	299, 422, 891, 940
PspPPI	RGGWCCY	2 cut(s)	422, 940
PstI	CTGCAG	1 cut(s)	444
PsuI	RGATCY	1 cut(s)	715
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	3 cut(s)	387, 954, 1117
SatI	GCNGC	5 cut(s)	58, 248, 817, 872, 996
Sau3AI	GATC	8 cut(s)	196, 221, 436, 550, 715, 856, 861, 1092
Sau96I	GGNCC	4 cut(s)	299, 422, 891, 940
SchI	GAGTC	2 cut(s)	365, 506
ScrFI	CCNGG	2 cut(s)	291, 474
SfaNI	GCATC	3 cut(s)	383, 408, 546
SfcI	CTRYAG	1 cut(s)	440
SinI	GGWCC	2 cut(s)	422, 940
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	2 cut(s)	165, 426
SmoI	CTYRAG	2 cut(s)	165, 426
SsiI	CCGC	2 cut(s)	58, 894
SspMI	CTAG	2 cut(s)	560, 1007
StyD4I	CCNGG	2 cut(s)	289, 472
TaaI	ACNGT	2 cut(s)	49, 617
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	902
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	604, 904
Tru1I	TTAA	3 cut(s)	387, 954, 1117
Tru9I	TTAA	3 cut(s)	387, 954, 1117
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	4 cut(s)	247, 816, 871, 995
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	2 cut(s)	823, 896
TspGWI	ACGGA	2 cut(s)	20, 49
VpaK11BI	GGWCC	2 cut(s)	422, 940
XapI	RAATTY	3 cut(s)	365, 1021, 1055
XceI	RCATGY	1 cut(s)	399
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	2 cut(s)	560, 1007
Zsp2I	ATGCAT	2 cut(s)	401, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.