Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004596

Physical Location & Seq

Genomic Coordinates Forward (+)

48162017 .. 48165506

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0377100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGTCTTTTACGGCGTGCATTTAATGCGTGCCGTAATAGGTACACATTTACGGCTCATTTTCACGCAGGCCGTTAATACCGTTTCTGATATGGTCTTTTACGGCTTGCATCTAATGCACGCCGTTAATAGTCGCCGGCCGCGTACCTCCCACCACCACCACCACCACCACGACGTTCTGTGCTCCTCTCATCGAGATGTCGTGGATCGATTGAGCTGCGAATTAAAGAACATTGAAGTGGTTGCTGCTCTCAGAGATTGGGGCCACCGGTTTCAGGGTCTTGAAGTTTCTGAAACCCTTTTGGAGAAAGTTGAGAACTTTGGCCTTGGTATCAAATTCTTTGAACCAGAGATCAAGGGAGATTCGCCTGAAAAGGTGGAGTACGTTGGGATGAAAAATTTGATTAATGCTCTAAAACAAAGTGTTGGACTTCAAAATGGAAAGCTACTATTTGGATATGAAGGTAATAATTATAGGGAATTGACTTGGGGAGCTTTAGATGATGTTGTGATGGGTGGAGTGAGTGAAAGTGCATTTCTGATCGACCCAAATGGCAGTGAAAATGGTGGACCAACTGGACTTTTTAAAGGAGTTGTTTCCACTGCAAATAATAGTGGGTTTACAAGCATCAGAACAAAGAATCTATCAACTCCTGAGGATCTCTCTGCATATGATGGTATAGAGCTGCGCCTTAAAGGTGATGGTCGTCGTTATAAACTAATTCTTCGGACAAGTGGTGATTGGGATATTGTTGGTTACACAGCAGGCTTTGACACTGTAAAAGACCAGTGGCAGACAGTGAGTATCACAATGGTCCTCTCAATTTTTCTCTGGCCAAATCAAGTTTTCATATTCTGCTTGATCTATTTAGGGTTTTTCAATTGTGGGAAGGTTTCTTGTCTGAATCACTTGCTAGGTGGTTTGAGCTGCCTCAGCCGAGCTGCCGGGCTTCACACTCACCAGAGGAACAAGAGAGCCAGACTTTTCGACTTTCAGAGATCTGAGACAGATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

338

Amino Acids

37.91

Weight (kDa)

7.27

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CIA30	PF08547	161 - 270	1e-29	Complex I intermediate-associated protein 30 (CIA30)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55150 AT1G55150
fragaria_vesca	FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220
malus_domestica	MD09G1194200.v1.1 MD17G1174700.v1.1
prunus_persica	Prupe.3G019300_v2.0.a1 Prupe.3G019300_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1
pyrus_communis	pycom09g11070
rosa_chinensis	RchiOBHm_Chr2g0142931
rosa_laevigata	RLG00000019997
rosa_multiflora	Rmu_sc0028648.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102220 Rroxscaffold_2G00103260
rosa_rugosa	Rorug02G0377000 Rorug02G0377100 Rorug02G0377200
rosa_samantha	Rh2AG430000 Rh2BG439000 Rh2CG362000 Rh2CG415500 Rh2DG449000
rosa_wichuraiana	Rw2G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AccII	CGCG	1 cut(s)	142
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	213, 666
AcoI	YGGCCR	2 cut(s)	137, 833
AcsI	RAATTY	2 cut(s)	335, 397
AfaI	GTAC	3 cut(s)	43, 145, 383
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	236, 284, 344, 434, 880
AluBI	AGCT	6 cut(s)	216, 445, 494, 685, 927, 941
AluI	AGCT	6 cut(s)	216, 445, 494, 685, 927, 941
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	1 cut(s)	998
AlwI	GGATC	2 cut(s)	213, 666
AoxI	GGCC	5 cut(s)	69, 137, 262, 322, 833
ApeKI	GCWGC	5 cut(s)	216, 245, 685, 927, 941
ApoI	RAATTY	2 cut(s)	335, 397
AseI	ATTAAT	1 cut(s)	405
AsiGI	ACCGGT	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	690
AspS9I	GGNCC	3 cut(s)	262, 569, 814
AsuC2I	CCSGG	1 cut(s)	946
AsuHPI	GGTGA	3 cut(s)	710, 749, 950
AvaII	GGWCC	2 cut(s)	569, 814
AxyI	CCTNAGG	1 cut(s)	654
BalI	TGGCCA	1 cut(s)	835
Bbv12I	GWGCWC	1 cut(s)	185
BbvCI	CCTCAGC	1 cut(s)	932
BbvI	GCAGC	5 cut(s)	203, 232, 672, 914, 928
BccI	CCATC	3 cut(s)	505, 668, 695
BceAI	ACGGC	6 cut(s)	17, 28, 56, 68, 107, 118
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BcnI	CCSGG	1 cut(s)	946
BcoDI	GTCTC	1 cut(s)	998
BfaI	CTAG	1 cut(s)	914
BglII	AGATCT	1 cut(s)	998
BisI	GCNGC	6 cut(s)	140, 217, 246, 686, 928, 942
BlsI	GCNGC	6 cut(s)	141, 218, 247, 687, 929, 943
Bme1390I	CCNGG	1 cut(s)	946
Bme18I	GGWCC	2 cut(s)	569, 814
BmgT120I	GGNCC	3 cut(s)	262, 569, 814
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	946
BmsI	GCATC	2 cut(s)	118, 636
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
Bpu10I	CCTNAGC	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	946
Bsa29I	ATCGAT	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	2 cut(s)	135, 267
Bse1I	ACTGG	2 cut(s)	580, 787
Bse21I	CCTNAGG	1 cut(s)	654
BseCI	ATCGAT	1 cut(s)	208
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	4 cut(s)	265, 645, 946, 993
BseNI	ACTGG	2 cut(s)	580, 787
BseRI	GAGGAG	1 cut(s)	175
BseX3I	CGGCCG	1 cut(s)	137
BseXI	GCAGC	5 cut(s)	203, 232, 672, 914, 928
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	140
BshFI	GGCC	5 cut(s)	71, 139, 264, 324, 835
BshTI	ACCGGT	1 cut(s)	267
BshVI	ATCGAT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	3 cut(s)	136, 268, 945
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	998
BsnI	GGCC	5 cut(s)	71, 139, 264, 324, 835
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	6 cut(s)	205, 351, 540, 658, 861, 998
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	5 cut(s)	71, 139, 264, 324, 835
BspCNI	CTCAG	4 cut(s)	264, 646, 945, 994
BspDI	ATCGAT	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	213, 666
BsrFI	RCCGGY	2 cut(s)	135, 267
BsrI	ACTGG	2 cut(s)	580, 787
BssAI	RCCGGY	2 cut(s)	135, 267
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	6 cut(s)	205, 351, 540, 658, 861, 998
BssT1I	CCWWGG	1 cut(s)	325
Bst4CI	ACNGT	3 cut(s)	82, 778, 799
BstAPI	GCANNNNNTGC	2 cut(s)	25, 115
BstC8I	GCNNGC	7 cut(s)	17, 30, 69, 107, 120, 137, 766
BstDEI	CTNAG	4 cut(s)	251, 654, 932, 1002
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	690
BstKTI	GATC	6 cut(s)	208, 354, 543, 661, 864, 1001
BstMAI	GTCTC	1 cut(s)	998
BstMBI	GATC	6 cut(s)	205, 351, 540, 658, 861, 998
BstMCI	CGRYCG	1 cut(s)	140
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 115, 933
BstSCI	CCNGG	1 cut(s)	944
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	5 cut(s)	203, 232, 672, 914, 928
BstX2I	RGATCY	2 cut(s)	658, 998
BstYI	RGATCY	2 cut(s)	658, 998
BstZI	CGGCCG	1 cut(s)	137
Bsu15I	ATCGAT	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	654
BsuRI	GGCC	5 cut(s)	71, 139, 264, 324, 835
BsuTUI	ATCGAT	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	2 cut(s)	562, 600
BtsIMutI	CAGTG	5 cut(s)	562, 600, 774, 794, 804
Cac8I	GCNNGC	7 cut(s)	17, 30, 69, 107, 120, 137, 766
CfoI	GCGC	1 cut(s)	690
Cfr10I	RCCGGY	2 cut(s)	135, 267
Cfr13I	GGNCC	3 cut(s)	262, 569, 814
ClaI	ATCGAT	1 cut(s)	208
Csp6I	GTAC	3 cut(s)	42, 144, 382
CspAI	ACCGGT	1 cut(s)	267
CviQI	GTAC	3 cut(s)	42, 144, 382
DdeI	CTNAG	4 cut(s)	251, 654, 932, 1002
DpnI	GATC	6 cut(s)	207, 353, 542, 660, 863, 1000
DpnII	GATC	6 cut(s)	205, 351, 540, 658, 861, 998
DraI	TTTAAA	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	137, 833
EagI	CGGCCG	1 cut(s)	137
EclXI	CGGCCG	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	569, 814
Eco52I	CGGCCG	1 cut(s)	137
Eco81I	CCTNAGG	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	325
ErhI	CCWWGG	1 cut(s)	325
FaiI	YATR	8 cut(s)	92, 459, 474, 670, 672, 680, 714, 851
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	6 cut(s)	140, 217, 246, 686, 928, 942
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	6 cut(s)	140, 217, 246, 686, 928, 942
FspBI	CTAG	1 cut(s)	914
GlaI	GCGC	1 cut(s)	689
GluI	GCNGC	6 cut(s)	140, 217, 246, 686, 928, 942
HaeIII	GGCC	5 cut(s)	71, 139, 264, 324, 835
HapII	CCGG	3 cut(s)	136, 268, 945
HhaI	GCGC	1 cut(s)	690
Hin6I	GCGC	1 cut(s)	688
HinP1I	GCGC	1 cut(s)	688
HinfI	GANTC	4 cut(s)	362, 640, 904, 1010
HpaII	CCGG	3 cut(s)	136, 268, 945
HphI	GGTGA	3 cut(s)	710, 749, 950
Hpy166II	GTNNAC	3 cut(s)	44, 569, 621
Hpy188I	TCNGA	9 cut(s)	88, 254, 292, 540, 632, 729, 903, 996, 1003
Hpy188III	TCNNGA	3 cut(s)	194, 281, 653
Hpy8I	GTNNAC	3 cut(s)	44, 569, 621
Hpy99I	CGWCG	2 cut(s)	176, 711
HpyAV	CCTTC	2 cut(s)	455, 883
HpyCH4III	ACNGT	3 cut(s)	82, 778, 799
HpyCH4IV	ACGT	2 cut(s)	174, 384
HpyCH4V	TGCA	6 cut(s)	19, 109, 118, 533, 605, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 115, 933
HpyF3I	CTNAG	4 cut(s)	251, 654, 932, 1002
HpySE526I	ACGT	2 cut(s)	174, 384
HspAI	GCGC	1 cut(s)	688
KroI	GCCGGC	1 cut(s)	135
KroNI	GCCGGC	1 cut(s)	137
Kzo9I	GATC	6 cut(s)	205, 351, 540, 658, 861, 998
LmnI	GCTCC	2 cut(s)	188, 491
Lsp1109I	GCAGC	5 cut(s)	203, 232, 672, 914, 928
LweI	GCATC	2 cut(s)	118, 636
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	2 cut(s)	174, 384
MaeIII	GTNAC	1 cut(s)	755
MalI	GATC	6 cut(s)	207, 353, 542, 660, 863, 1000
MboI	GATC	6 cut(s)	205, 351, 540, 658, 861, 998
MboII	GAAGA	1 cut(s)	716
MfeI	CAATTG	1 cut(s)	880
MflI	RGATCY	2 cut(s)	658, 998
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	835
MluCI	AATT	8 cut(s)	221, 335, 397, 469, 479, 720, 822, 880
MluNI	TGGCCA	1 cut(s)	835
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	6 cut(s)	157, 196, 649, 827, 941, 957
Mox20I	TGGCCA	1 cut(s)	835
MroNI	GCCGGC	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	835
MseI	TTAA	7 cut(s)	23, 75, 126, 224, 405, 585, 693
MslI	CAYNNNNRTG	2 cut(s)	195, 236
Msp20I	TGGCCA	1 cut(s)	835
MspI	CCGG	3 cut(s)	136, 268, 945
MspR9I	CCNGG	1 cut(s)	946
MunI	CAATTG	1 cut(s)	880
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	3 cut(s)	25, 115, 933
NaeI	GCCGGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	946
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	6 cut(s)	205, 351, 540, 658, 861, 998
NgoMIV	GCCGGC	1 cut(s)	135
NlaIV	GGNNCC	1 cut(s)	263
NmeAIII	GCCGAG	1 cut(s)	962
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdiI	GCCGGC	1 cut(s)	137
PfeI	GAWTC	4 cut(s)	362, 640, 904, 1010
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	6 cut(s)	141, 218, 247, 687, 929, 943
PshBI	ATTAAT	1 cut(s)	405
PsiI	TTATAA	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	3 cut(s)	262, 569, 814
PsuI	RGATCY	2 cut(s)	658, 998
RsaI	GTAC	3 cut(s)	43, 145, 383
RsaNI	GTAC	3 cut(s)	42, 144, 382
RseI	CAYNNNNRTG	2 cut(s)	195, 236
SaqAI	TTAA	7 cut(s)	23, 75, 126, 224, 405, 585, 693
SatI	GCNGC	6 cut(s)	140, 217, 246, 686, 928, 942
Sau3AI	GATC	6 cut(s)	205, 351, 540, 658, 861, 998
Sau96I	GGNCC	3 cut(s)	262, 569, 814
ScrFI	CCNGG	1 cut(s)	946
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	2 cut(s)	118, 636
SinI	GGWCC	2 cut(s)	569, 814
SmiMI	CAYNNNNRTG	2 cut(s)	195, 236
Sse9I	AATT	8 cut(s)	221, 335, 397, 469, 479, 720, 822, 880
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	944
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	82, 778, 799
TaiI	ACGT	2 cut(s)	177, 387
TaqI	TCGA	4 cut(s)	193, 208, 543, 987
TasI	AATT	8 cut(s)	221, 335, 397, 469, 479, 720, 822, 880
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	4 cut(s)	362, 640, 904, 1010
Tru1I	TTAA	7 cut(s)	23, 75, 126, 224, 405, 585, 693
Tru9I	TTAA	7 cut(s)	23, 75, 126, 224, 405, 585, 693
TscAI	CASTG	5 cut(s)	562, 607, 781, 794, 804
TseI	GCWGC	5 cut(s)	216, 245, 685, 927, 941
TspDTI	ATGAA	3 cut(s)	407, 474, 838
TspRI	CASTG	5 cut(s)	562, 607, 781, 794, 804
VpaK11BI	GGWCC	2 cut(s)	569, 814
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	2 cut(s)	335, 397
XspI	CTAG	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.