Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004596

Physical Location & Seq

Genomic Coordinates Forward (+)

48158420 .. 48160064

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0377000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGAGCCAGAAGAAGATGATGGTTGTTTTTGGTTTAGTTGCCGCCGTGTTTTTGCAGATTATGGCAGCGCAGACGGCGCATGTGGTGGGAGGTAGCATAGGCTGGACCATACCACAGAACGGTGCGCAAGAGTATGTCACGTGGGCGTCTGGACAGAAGTTCCTAGTTGGTGATGTTCTGACTTTCAACTTTGCCACAAACACGCATGATGTTGTAGAAGTACCCAAAGCATCATTCGACTCATGCAGCTCCTCCAACCCAATCGGCAGCACCATCACCACTGGCCCAGCAAACGTCACTCTCACGTCTGCCGGCGACCACTACTATATCTGCACTTTCGGCCGCCATTGCCAGTCCGGACAAAAGCTCGCCATTACCGTCTCAGCATCCGCCACATCACCTGGAGCCTCCCCTTCTGCACCAACTCCCGTATCCCCAACGCCACCCACTCCCACTACTACTCCTACCACGCCTTCACCCACATCTAACGCCCCTTGCCCTCCGGTCCAAGCACCATCTCCGTCCACCAAAACCACGGGGCCCACAGCTAGCACCACGCCGGGATCCACCGCGTTGCCTCCAAGCTCTTCTTCCCCTATCGTTGGGGCTGGTTTGGTTTTGAGCTTATTGTCCCTTGTAATGGGACTTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

219

Amino Acids

22.2

Weight (kDa)

6.88

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	36 - 122	1e-25	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55150 AT1G55150
fragaria_vesca	FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220
malus_domestica	MD09G1194200.v1.1 MD17G1174700.v1.1
prunus_persica	Prupe.3G019300_v2.0.a1 Prupe.3G019300_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1
pyrus_communis	pycom09g11070
rosa_chinensis	RchiOBHm_Chr2g0142931
rosa_laevigata	RLG00000019997
rosa_multiflora	Rmu_sc0028648.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102220 Rroxscaffold_2G00103260
rosa_rugosa	Rorug02G0377000 Rorug02G0377100 Rorug02G0377200
rosa_samantha	Rh2AG430000 Rh2BG439000 Rh2CG362000 Rh2CG415500 Rh2DG449000
rosa_wichuraiana	Rw2G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	129
AccII	CGCG	1 cut(s)	575
AccIII	TCCGGA	1 cut(s)	359
AciI	CCGC	4 cut(s)	45, 346, 393, 573
AclWI	GGATC	2 cut(s)	561, 574
AcoI	YGGCCR	1 cut(s)	343
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	122, 605, 643
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	309
AjnI	CCWGG	1 cut(s)	403
AjuI	GAANNNNNNNTTGG	4 cut(s)	221, 253, 577, 609
AluBI	AGCT	5 cut(s)	252, 370, 551, 588, 627
AluI	AGCT	5 cut(s)	252, 370, 551, 588, 627
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	561, 574
Aor13HI	TCCGGA	1 cut(s)	359
AoxI	GGCC	3 cut(s)	286, 343, 542
ApaI	GGGCCC	1 cut(s)	546
ApeKI	GCWGC	3 cut(s)	68, 249, 270
AspLEI	GCGC	3 cut(s)	73, 82, 130
AspS9I	GGNCC	5 cut(s)	108, 287, 508, 542, 543
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	4 cut(s)	185, 271, 393, 471
AsuNHI	GCTAGC	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	108, 508
BaeGI	GKGCMC	1 cut(s)	546
BaeI	ACNNNNGTAYC	2 cut(s)	417, 450
BamHI	GGATCC	1 cut(s)	566
BanII	GRGCYC	1 cut(s)	546
BbrPI	CACGTG	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	80, 261, 282
BccI	CCATC	3 cut(s)	16, 284, 526
BceAI	ACGGC	2 cut(s)	32, 93
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	167, 552
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	5 cut(s)	45, 69, 250, 271, 346
BlsI	GCNGC	5 cut(s)	46, 70, 251, 272, 347
Bme1390I	CCNGG	2 cut(s)	405, 564
Bme18I	GGWCC	2 cut(s)	108, 508
BmgBI	CACGTC	1 cut(s)	309
BmgT120I	GGNCC	5 cut(s)	108, 287, 508, 542, 543
BmiI	GGNNCC	4 cut(s)	409, 543, 544, 568
BmrFI	CCNGG	2 cut(s)	405, 564
BmsI	GCATC	2 cut(s)	242, 398
BmtI	GCTAGC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	564
BsaAI	YACGTR	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	2 cut(s)	359, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 605, 643
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	289, 355
Bse3DI	GCAATG	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	3 cut(s)	122, 605, 643
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	289, 355
BseRI	GAGGAG	1 cut(s)	244
BseSI	GKGCMC	1 cut(s)	546
BseX3I	CGGCCG	1 cut(s)	343
BseXI	GCAGC	3 cut(s)	80, 261, 282
BseYI	CCCAGC	1 cut(s)	289
BsgI	GTGCAG	2 cut(s)	319, 405
Bsh1236I	CGCG	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	346
BshFI	GGCC	3 cut(s)	288, 345, 544
BsiEI	CGRYCG	1 cut(s)	346
BsiSI	CCGG	4 cut(s)	315, 360, 506, 563
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	3 cut(s)	122, 605, 643
BsmAI	GTCTC	1 cut(s)	388
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	288, 345, 544
Bsp120I	GGGCCC	1 cut(s)	542
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp13I	TCCGGA	1 cut(s)	359
Bsp143I	GATC	1 cut(s)	566
BspACI	CCGC	4 cut(s)	45, 346, 393, 573
BspANI	GGCC	3 cut(s)	288, 345, 544
BspCNI	CTCAG	1 cut(s)	398
BspEI	TCCGGA	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	575
BspLI	GGNNCC	4 cut(s)	409, 543, 544, 568
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	561, 574
BspQI	GCTCTTC	1 cut(s)	595
BsrDI	GCAATG	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	2 cut(s)	289, 355
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	1 cut(s)	566
BssNI	GRCGYC	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	125, 382
Bst6I	CTCTTC	1 cut(s)	595
BstACI	GRCGYC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	316, 372, 553
BstDEI	CTNAG	1 cut(s)	385
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	1 cut(s)	575
BstHHI	GCGC	3 cut(s)	73, 82, 130
BstKTI	GATC	1 cut(s)	569
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	566
BstMCI	CGRYCG	1 cut(s)	346
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 79, 342, 351
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	2 cut(s)	403, 562
BstSLI	GKGCMC	1 cut(s)	546
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	80, 261, 282
BstX2I	RGATCY	1 cut(s)	566
BstYI	RGATCY	1 cut(s)	566
BstZI	CGGCCG	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	288, 345, 544
BtgI	CCRYGG	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	316, 372, 553
CfoI	GCGC	3 cut(s)	73, 82, 130
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	5 cut(s)	108, 287, 508, 542, 543
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	83, 209, 246
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	343
EagI	CGGCCG	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
EciI	GGCGGA	1 cut(s)	382
EclXI	CGGCCG	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	546
Eco47I	GGWCC	2 cut(s)	108, 508
Eco52I	CGGCCG	1 cut(s)	343
Eco72I	CACGTG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	403
EcoT38I	GRGCYC	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	3 cut(s)	86, 212, 249
FaiI	YATR	8 cut(s)	65, 84, 101, 113, 138, 210, 247, 330
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	3 cut(s)	82, 208, 245
Fnu4HI	GCNGC	5 cut(s)	45, 69, 250, 271, 346
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	546
Fsp4HI	GCNGC	5 cut(s)	45, 69, 250, 271, 346
FspBI	CTAG	2 cut(s)	167, 552
FspI	TGCGCA	1 cut(s)	129
GlaI	GCGC	3 cut(s)	72, 81, 129
GluI	GCNGC	5 cut(s)	45, 69, 250, 271, 346
GsaI	CCCAGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	288, 345, 544
HapII	CCGG	4 cut(s)	315, 360, 506, 563
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	3 cut(s)	73, 82, 130
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	86, 212, 249
Hin6I	GCGC	3 cut(s)	71, 80, 128
HinP1I	GCGC	3 cut(s)	71, 80, 128
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	4 cut(s)	315, 360, 506, 563
HphI	GGTGA	4 cut(s)	185, 271, 393, 471
Hpy166II	GTNNAC	1 cut(s)	528
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	153, 360
Hpy8I	GTNNAC	1 cut(s)	528
HpyAV	CCTTC	2 cut(s)	426, 486
HpyCH4III	ACNGT	2 cut(s)	125, 382
HpyCH4IV	ACGT	3 cut(s)	143, 297, 308
HpyCH4V	TGCA	4 cut(s)	58, 249, 336, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 79, 342, 351
HpyF3I	CTNAG	1 cut(s)	385
HpySE526I	ACGT	3 cut(s)	143, 297, 308
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	86, 212, 249
HspAI	GCGC	3 cut(s)	71, 80, 128
Kpn2I	TCCGGA	1 cut(s)	359
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	566
LguI	GCTCTTC	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	257, 407
Lsp1109I	GCAGC	3 cut(s)	80, 261, 282
LweI	GCATC	2 cut(s)	242, 398
MaeI	CTAG	2 cut(s)	167, 552
MaeII	ACGT	3 cut(s)	143, 297, 308
MaeIII	GTNAC	2 cut(s)	139, 298
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	4 cut(s)	25, 28, 582, 585
MflI	RGATCY	1 cut(s)	566
MhlI	GDGCHC	1 cut(s)	546
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	86, 265, 421, 513, 591
MroI	TCCGGA	1 cut(s)	359
MroNI	GCCGGC	1 cut(s)	314
MspI	CCGG	4 cut(s)	315, 360, 506, 563
MspR9I	CCNGG	2 cut(s)	405, 564
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	4 cut(s)	77, 79, 342, 351
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	1 cut(s)	566
NgoMIV	GCCGGC	1 cut(s)	314
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	3 cut(s)	86, 212, 249
NlaIV	GGNNCC	4 cut(s)	409, 543, 544, 568
NmuCI	GTSAC	2 cut(s)	139, 298
NsbI	TGCGCA	1 cut(s)	129
NspI	RCATGY	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	316
PkrI	GCNGC	5 cut(s)	46, 70, 251, 272, 347
PleI	GAGTC	1 cut(s)	236
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	236
Ppu21I	YACGTR	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	403
PspCI	CACGTG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	4 cut(s)	409, 543, 544, 568
PspOMI	GGGCCC	1 cut(s)	542
PspPI	GGNCC	5 cut(s)	108, 287, 508, 542, 543
PsuI	RGATCY	1 cut(s)	566
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	595
SatI	GCNGC	5 cut(s)	45, 69, 250, 271, 346
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	5 cut(s)	108, 287, 508, 542, 543
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	405, 564
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	2 cut(s)	242, 398
SinI	GGWCC	2 cut(s)	108, 508
SsiI	CCGC	4 cut(s)	45, 346, 393, 573
SspMI	CTAG	2 cut(s)	167, 552
StyD4I	CCNGG	2 cut(s)	403, 562
TaaI	ACNGT	2 cut(s)	125, 382
TaiI	ACGT	3 cut(s)	146, 300, 311
TaqI	TCGA	1 cut(s)	240
TauI	GCSGC	2 cut(s)	47, 348
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	2 cut(s)	139, 298
TseI	GCWGC	3 cut(s)	68, 249, 270
Tsp45I	GTSAC	2 cut(s)	139, 298
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	2 cut(s)	108, 508
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	2 cut(s)	167, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.