Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004596

Physical Location & Seq

Genomic Coordinates Forward (+)

48180506 .. 48181573

Gene Structure 1068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0377200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGGGCCAGAAGAAAATTATGGTTGTTTTTGGGTTAGTTGCGGCTGTGTTTCTGCACAGTGTGGCTGCGCAGACGGCGCATGTGGTGGGAGGCAGCTTAGGTTGGACCATACCACAGAATGGTGCACAAGAGTATGCCACTTGGGCTTCTGGTCAGAAGTTCCTAGTTGGTGATGTTTTGATTTTCAACTTCGCGACGGACACACACGACGTAGTGGAAGTACCCAAAGCATCTTTCGACTCATGCAGCTCCGCCAACCCAATCGGCAGCACCATCACCACCGGCCCGACCAACATCACTCTCACCGCCGCCGGCGACCACTACTACATCTGTACTTTCGGACGCCACTGCCAGTCCGGCCAGAAGCTAGCCATCACGGTCTCAACATCCGCCACGTCACCCGGAGCCTCCCCTTCTGCATCCACTCCCGTGTCCACATCTGACGCTCCTTGCCCTCCTGTCCAAGCTCCATCTCCTTCCCCCACAACCAGGGGGCCCACAGCTAGCACCCCGCCGGGATCCACTGAGTTGCCGCCGAGCTCTTCTTCCCCGTCCGCTGGGGCTGGTTTCGTTTTGTGCTTGTTGTCCCTCGTAATGGGACTTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

204

Amino Acids

20.72

Weight (kDa)

5.87

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	36 - 122	6.1e-26	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55150 AT1G55150
fragaria_vesca	FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220
malus_domestica	MD09G1194200.v1.1 MD17G1174700.v1.1
prunus_persica	Prupe.3G019300_v2.0.a1 Prupe.3G019300_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1
pyrus_communis	pycom09g11070
rosa_chinensis	RchiOBHm_Chr2g0142931
rosa_laevigata	RLG00000019997
rosa_multiflora	Rmu_sc0028648.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102220 Rroxscaffold_2G00103260
rosa_rugosa	Rorug02G0377000 Rorug02G0377100 Rorug02G0377200
rosa_samantha	Rh2AG430000 Rh2BG439000 Rh2CG362000 Rh2CG415500 Rh2DG449000
rosa_wichuraiana	Rw2G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccII	CGCG	1 cut(s)	197
AciI	CCGC	8 cut(s)	44, 255, 309, 312, 393, 515, 536, 558
AclWI	GGATC	2 cut(s)	516, 529
AcoI	YGGCCR	1 cut(s)	361
AcyI	GRCGYC	1 cut(s)	346
AdeI	CACNNNGTG	1 cut(s)	64
AfaI	GTAC	2 cut(s)	225, 337
AfiI	CCNNNNNNNGG	4 cut(s)	122, 492, 560, 598
AgsI	TTSAA	1 cut(s)	190
AjiI	CACGTC	1 cut(s)	399
AjnI	CCWGG	1 cut(s)	491
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	6 cut(s)	99, 252, 370, 470, 506, 543
AluI	AGCT	6 cut(s)	99, 252, 370, 470, 506, 543
Alw21I	GWGCWC	2 cut(s)	130, 545
Alw26I	GTCTC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	516, 529
AoxI	GGCC	4 cut(s)	7, 286, 361, 497
ApaI	GGGCCC	1 cut(s)	501
ApaLI	GTGCAC	1 cut(s)	126
ApeKI	GCWGC	4 cut(s)	68, 96, 249, 270
AspLEI	GCGC	2 cut(s)	73, 82
AspS9I	GGNCC	5 cut(s)	7, 108, 287, 497, 498
AsuC2I	CCSGG	2 cut(s)	405, 519
AsuHPI	GGTGA	4 cut(s)	185, 271, 298, 393
AsuNHI	GCTAGC	2 cut(s)	370, 506
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	2 cut(s)	130, 501
BamHI	GGATCC	1 cut(s)	521
BanII	GRGCYC	2 cut(s)	501, 545
Bbv12I	GWGCWC	2 cut(s)	130, 545
BbvI	GCAGC	4 cut(s)	55, 108, 261, 282
BccI	CCATC	3 cut(s)	284, 383, 481
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	493
BcnI	CCSGG	2 cut(s)	405, 519
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	3 cut(s)	167, 371, 507
BglI	GCCNNNNNGGC	2 cut(s)	146, 360
BisI	GCNGC	7 cut(s)	45, 69, 97, 250, 271, 312, 536
BlsI	GCNGC	7 cut(s)	46, 70, 98, 251, 272, 313, 537
Bme1390I	CCNGG	3 cut(s)	405, 493, 519
Bme18I	GGWCC	1 cut(s)	108
BmgBI	CACGTC	1 cut(s)	399
BmgT120I	GGNCC	5 cut(s)	7, 108, 287, 497, 498
BmiI	GGNNCC	4 cut(s)	409, 498, 499, 523
BmrFI	CCNGG	3 cut(s)	405, 493, 519
BmsI	GCATC	2 cut(s)	242, 431
BmtI	GCTAGC	2 cut(s)	374, 510
Bpu10I	CCTNAGC	1 cut(s)	100
BpuMI	CCSGG	2 cut(s)	405, 519
BsaHI	GRCGYC	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	4 cut(s)	122, 492, 560, 598
Bse118I	RCCGGY	2 cut(s)	284, 314
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	389, 422
BseLI	CCNNNNNNNGG	4 cut(s)	122, 492, 560, 598
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	2 cut(s)	130, 501
BseXI	GCAGC	4 cut(s)	55, 108, 261, 282
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	4 cut(s)	9, 288, 363, 499
BsiHKAI	GWGCWC	2 cut(s)	130, 545
BsiSI	CCGG	5 cut(s)	285, 315, 360, 405, 518
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	4 cut(s)	122, 492, 560, 598
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	4 cut(s)	9, 288, 363, 499
Bso31I	GGTCTC	1 cut(s)	388
Bsp120I	GGGCCC	1 cut(s)	497
Bsp1286I	GDGCHC	3 cut(s)	130, 501, 545
Bsp143I	GATC	1 cut(s)	521
Bsp68I	TCGCGA	1 cut(s)	197
BspACI	CCGC	8 cut(s)	44, 255, 309, 312, 393, 515, 536, 558
BspANI	GGCC	4 cut(s)	9, 288, 363, 499
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	4 cut(s)	409, 498, 499, 523
BspOI	GCTAGC	2 cut(s)	374, 510
BspPI	GGATC	2 cut(s)	516, 529
BspQI	GCTCTTC	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	388
BsrFI	RCCGGY	2 cut(s)	284, 314
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	2 cut(s)	284, 314
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	1 cut(s)	521
BssNI	GRCGYC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	2 cut(s)	62, 382
Bst6I	CTCTTC	1 cut(s)	550
BstACI	GRCGYC	1 cut(s)	346
BstC8I	GCNNGC	3 cut(s)	316, 372, 508
BstDEI	CTNAG	2 cut(s)	100, 528
BstF5I	GGATG	2 cut(s)	389, 422
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	2 cut(s)	73, 82
BstKTI	GATC	1 cut(s)	524
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	521
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 79, 146, 360
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	3 cut(s)	403, 491, 517
BstSLI	GKGCMC	2 cut(s)	130, 501
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	4 cut(s)	55, 108, 261, 282
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	4 cut(s)	9, 288, 363, 499
BtrI	CACGTC	1 cut(s)	399
BtsCI	GGATG	2 cut(s)	389, 422
BtsI	GCAGTG	1 cut(s)	349
BtsIMutI	CAGTG	3 cut(s)	67, 349, 525
BtuMI	TCGCGA	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	316, 372, 508
CfoI	GCGC	2 cut(s)	73, 82
Cfr10I	RCCGGY	2 cut(s)	284, 314
Cfr13I	GGNCC	5 cut(s)	7, 108, 287, 497, 498
CseI	GACGC	2 cut(s)	354, 455
Csp6I	GTAC	2 cut(s)	224, 336
CviAII	CATG	2 cut(s)	83, 246
CviQI	GTAC	2 cut(s)	224, 336
DdeI	CTNAG	2 cut(s)	100, 528
DpnI	GATC	1 cut(s)	523
DpnII	GATC	1 cut(s)	521
DraIII	CACNNNGTG	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	550
EarI	CTCTTC	1 cut(s)	550
EciI	GGCGGA	2 cut(s)	244, 382
Ecl136II	GAGCTC	1 cut(s)	543
Eco24I	GRGCYC	2 cut(s)	501, 545
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	491
EcoT38I	GRGCYC	2 cut(s)	501, 545
FaeI	CATG	2 cut(s)	86, 249
FaiI	YATR	5 cut(s)	23, 84, 113, 138, 247
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	2 cut(s)	82, 245
FauI	CCCGC	1 cut(s)	522
Fnu4HI	GCNGC	7 cut(s)	45, 69, 97, 250, 271, 312, 536
FokI	GGATG	2 cut(s)	376, 409
FriOI	GRGCYC	2 cut(s)	501, 545
Fsp4HI	GCNGC	7 cut(s)	45, 69, 97, 250, 271, 312, 536
FspBI	CTAG	3 cut(s)	167, 371, 507
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	2 cut(s)	72, 81
GluI	GCNGC	7 cut(s)	45, 69, 97, 250, 271, 312, 536
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	4 cut(s)	9, 288, 363, 499
HapII	CCGG	5 cut(s)	285, 315, 360, 405, 518
HgaI	GACGC	2 cut(s)	354, 455
HhaI	GCGC	2 cut(s)	73, 82
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	86, 249
Hin6I	GCGC	2 cut(s)	71, 80
HinP1I	GCGC	2 cut(s)	71, 80
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	5 cut(s)	285, 315, 360, 405, 518
HphI	GGTGA	4 cut(s)	185, 271, 298, 393
Hpy166II	GTNNAC	2 cut(s)	128, 438
Hpy188I	TCNGA	3 cut(s)	159, 344, 445
Hpy188III	TCNNGA	1 cut(s)	196
Hpy8I	GTNNAC	2 cut(s)	128, 438
Hpy99I	CGWCG	2 cut(s)	202, 215
HpyAV	CCTTC	2 cut(s)	426, 489
HpyCH4III	ACNGT	2 cut(s)	62, 382
HpyCH4IV	ACGT	2 cut(s)	213, 398
HpyCH4V	TGCA	4 cut(s)	58, 128, 249, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 79, 146, 360
HpyF3I	CTNAG	2 cut(s)	100, 528
HpySE526I	ACGT	2 cut(s)	213, 398
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	86, 249
HspAI	GCGC	2 cut(s)	71, 80
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	521
LguI	GCTCTTC	1 cut(s)	550
LmnI	GCTCC	4 cut(s)	257, 407, 454, 475
Lsp1109I	GCAGC	4 cut(s)	55, 108, 261, 282
LweI	GCATC	2 cut(s)	242, 431
MaeI	CTAG	3 cut(s)	167, 371, 507
MaeII	ACGT	2 cut(s)	213, 398
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	1 cut(s)	523
MboI	GATC	1 cut(s)	521
MboII	GAAGA	3 cut(s)	25, 537, 540
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	3 cut(s)	130, 501, 545
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	4 cut(s)	86, 421, 468, 602
MreI	CGCCGGCG	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	560
MspI	CCGG	5 cut(s)	285, 315, 360, 405, 518
MspR9I	CCNGG	3 cut(s)	405, 493, 519
MvaI	CCWGG	1 cut(s)	493
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	4 cut(s)	77, 79, 146, 360
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	2 cut(s)	405, 519
NdeII	GATC	1 cut(s)	521
NgoMIV	GCCGGC	1 cut(s)	314
NheI	GCTAGC	2 cut(s)	370, 506
NlaIII	CATG	2 cut(s)	86, 249
NlaIV	GGNNCC	4 cut(s)	409, 498, 499, 523
NmeAIII	GCCGAG	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	399
NruI	TCGCGA	1 cut(s)	197
NsbI	TGCGCA	1 cut(s)	72
NspI	RCATGY	1 cut(s)	86
OliI	CACNNNNGTG	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	550
PdiI	GCCGGC	1 cut(s)	316
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	7 cut(s)	46, 70, 98, 251, 272, 313, 537
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	491
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	491
PspN4I	GGNNCC	4 cut(s)	409, 498, 499, 523
PspOMI	GGGCCC	1 cut(s)	497
PspPI	GGNCC	5 cut(s)	7, 108, 287, 497, 498
PsuI	RGATCY	1 cut(s)	521
RruI	TCGCGA	1 cut(s)	197
RsaI	GTAC	2 cut(s)	225, 337
RsaNI	GTAC	2 cut(s)	224, 336
RseI	CAYNNNNRTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	545
SapI	GCTCTTC	1 cut(s)	550
SatI	GCNGC	7 cut(s)	45, 69, 97, 250, 271, 312, 536
Sau3AI	GATC	1 cut(s)	521
Sau96I	GGNCC	5 cut(s)	7, 108, 287, 497, 498
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	405, 493, 519
SduI	GDGCHC	3 cut(s)	130, 501, 545
SetI	ASST	9 cut(s)	101, 106, 216, 254, 372, 401, 472, 508, 545
SfaNI	GCATC	2 cut(s)	242, 431
SgrAI	CRCCGGYG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	8 cut(s)	44, 255, 309, 312, 393, 515, 536, 558
SspMI	CTAG	3 cut(s)	167, 371, 507
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	403, 491, 517
TaaI	ACNGT	2 cut(s)	62, 382
TaiI	ACGT	2 cut(s)	216, 401
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	335
TauI	GCSGC	3 cut(s)	47, 314, 538
TscAI	CASTG	3 cut(s)	67, 356, 532
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	4 cut(s)	68, 96, 249, 270
Tsp45I	GTSAC	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	3 cut(s)	67, 356, 532
Van91I	CCANNNNNTGG	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	108
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	3 cut(s)	167, 371, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.