Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004596

Physical Location & Seq

Genomic Coordinates Forward (+)

9219601 .. 9223648

Gene Structure 4048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11070.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAGCCGCTACGACAGCCGCTCCGGCGACCCCACTTCCTACCGTGACCGGAGAAGTGATTCCGGTTTTGGTGGGGCAACCGGCTATGGTGGCTCAACACGGTCTTCTTCAAGCAGGAGGGAGAATGATGGTGCTGAGTCACCAGGGAAGTTGGATTTGGACGGATTGATACCTTTTGAGAAGAATTTCTATGTTGAGTCGCCTGAAGTGGAAAAAATGTCGGAGGTGGAGGTTGAGGAATATAGGAAACGGAGGGAAATTACTGTTGAAGGCCGTGATGTTCCAAAACCCATCAAGAGTTTCCGTGACACTGGGTTTCCAGAATACGTTTTGGAAGAAGTTACAAAGGCTGGATTTGTGGAACCTACACCAATCCAAGCTCAAGGATGGCCAATGGCTTTGAAAGGTCGTGATCTCATTGGTATTGCTGAAACAGGATCAGGGAAGACACTAGCCTACCTGTTGCCTGCAATTGTCCATGTCAATGCCCAACCAATTCTATCTCCTGGAGATGGCCCGATAGTTCTAGTTTTAGCTCCAACCCGTGAACTCGCTGTTCAAATCCAACAAGAGGCTACTAAATTTGGTTCATCGTCGAAAATTAAAAGCACGTGCATATATGGTGGGGTTCCAAAGGGACCTCAAGTTCGTGATCTGCAGAAAGGAGTTGAGATTGTAATTGCTACACCCGGGAGGTTGATTGATATGATGGAATCACATCATACCAACTTGCGAAGGGTCACTTACCTTGTATTGGATGAAGCTGATCGGATGCTAGACATGGGGTTTGACCCACAGATAAGGAAGATCGTTTCACAGATTCGCCCAGACCGTCAAACATTATACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAACTGGCGAGGCAGTTCCTCTACAACCCATACAAAGTGATAATAGGTTCTCCAGATTTGAAAGCTAACCATTCGATCGATCGCCAAATCGTTGACATCATTACTGAAAATCAGAAATATAACAAATTGGTGAAATTGCTTGAGGATATCATGGATGGCAGCAGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCGATCACTCGGCAGCTCCGCATGGATGGTTGGCCTGCTCTTTCGATTCATGGTGACAAGAGTCAAGCAGAAAGGGATTGGGTCCTCTCTGAGTTTAAAGCTGGCAAGAGCCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

398

Amino Acids

44.33

Weight (kDa)

8.93

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004596)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55150 AT1G55150
fragaria_vesca	FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220
malus_domestica	MD09G1194200.v1.1 MD17G1174700.v1.1
prunus_persica	Prupe.3G019300_v2.0.a1 Prupe.3G019300_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1
pyrus_communis	pycom09g11070
rosa_chinensis	RchiOBHm_Chr2g0142931
rosa_laevigata	RLG00000019997
rosa_multiflora	Rmu_sc0028648.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102220 Rroxscaffold_2G00103260
rosa_rugosa	Rorug02G0377000 Rorug02G0377100 Rorug02G0377200
rosa_samantha	Rh2AG430000 Rh2BG439000 Rh2CG362000 Rh2CG415500 Rh2DG449000
rosa_wichuraiana	Rw2G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	21
AciI	CCGC	3 cut(s)	7, 19, 1095
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	2 cut(s)	389, 860
AcsI	RAATTY	2 cut(s)	184, 581
AcuI	CTGAAG	1 cut(s)	225
AcvI	CACGTG	1 cut(s)	612
AfiI	CCNNNNNNNGG	3 cut(s)	512, 571, 754
AgsI	TTSAA	6 cut(s)	111, 269, 403, 560, 875, 937
AjnI	CCWGG	3 cut(s)	142, 505, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AloI	GAACNNNNNNTCC	2 cut(s)	630, 662
AluBI	AGCT	6 cut(s)	380, 536, 764, 941, 1092, 1177
AluI	AGCT	6 cut(s)	380, 536, 764, 941, 1092, 1177
AlwI	GGATC	1 cut(s)	445
Ama87I	CYCGRG	1 cut(s)	689
AoxI	GGCC	5 cut(s)	271, 389, 514, 860, 1108
ApeKI	GCWGC	2 cut(s)	1035, 1089
ApoI	RAATTY	2 cut(s)	184, 581
ArsI	GACNNNNNNTTYG	4 cut(s)	630, 662, 770, 802
Asp700I	GAANNNNTTC	2 cut(s)	58, 185
AspS9I	GGNCC	3 cut(s)	515, 638, 1158
AsuC2I	CCSGG	2 cut(s)	690, 691
AsuHPI	GGTGA	3 cut(s)	132, 1018, 1141
AvaI	CYCGRG	1 cut(s)	689
AvaII	GGWCC	2 cut(s)	638, 1158
BalI	TGGCCA	2 cut(s)	391, 862
BanII	GRGCYC	1 cut(s)	1189
BbrPI	CACGTG	1 cut(s)	612
BbsI	GAAGAC	2 cut(s)	96, 452
BbvI	GCAGC	2 cut(s)	1047, 1101
BccI	CCATC	7 cut(s)	122, 299, 381, 506, 703, 1025, 1096
BceAI	ACGGC	1 cut(s)	258
BciT130I	CCWGG	3 cut(s)	144, 507, 859
BciVI	GTATCC	1 cut(s)	1051
BcnI	CCSGG	2 cut(s)	690, 691
BfaI	CTAG	3 cut(s)	452, 527, 776
BfmI	CTRYAG	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	1051
BglI	GCCNNNNNGGC	1 cut(s)	24
BisI	GCNGC	4 cut(s)	7, 19, 1036, 1090
BlsI	GCNGC	4 cut(s)	8, 20, 1037, 1091
Bme1390I	CCNGG	5 cut(s)	144, 507, 690, 691, 859
Bme18I	GGWCC	2 cut(s)	638, 1158
BmeT110I	CYCGRG	1 cut(s)	689
BmgT120I	GGNCC	3 cut(s)	515, 638, 1158
BmiI	GGNNCC	4 cut(s)	363, 630, 639, 1159
BmrFI	CCNGG	5 cut(s)	144, 507, 690, 691, 859
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	762
BmuI	ACTGGG	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	1136
BpiI	GAAGAC	2 cut(s)	96, 452
BpmI	CTGGAG	3 cut(s)	528, 868, 912
BpuEI	CTTGAG	3 cut(s)	366, 627, 1037
BpuMI	CCSGG	2 cut(s)	690, 691
Bsa29I	ATCGAT	2 cut(s)	954, 1078
BsaAI	YACGTR	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	143, 689
BsaWI	WCCGGW	2 cut(s)	48, 62
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	3 cut(s)	512, 571, 754
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	3 cut(s)	316, 851, 885
BseBI	CCWGG	3 cut(s)	144, 507, 859
BseCI	ATCGAT	2 cut(s)	954, 1078
BseDI	CCNNGG	2 cut(s)	143, 689
BseGI	GGATG	6 cut(s)	392, 763, 777, 1036, 1076, 1107
BseLI	CCNNNNNNNGG	3 cut(s)	512, 571, 754
BseMII	CTCAG	2 cut(s)	126, 1157
BseNI	ACTGG	3 cut(s)	316, 851, 885
BseXI	GCAGC	2 cut(s)	1047, 1101
Bsh1285I	CGRYCG	2 cut(s)	954, 958
BshFI	GGCC	5 cut(s)	273, 391, 516, 862, 1110
BshVI	ATCGAT	2 cut(s)	954, 1078
BsiEI	CGRYCG	2 cut(s)	954, 958
BsiHKCI	CYCGRG	1 cut(s)	689
BsiSI	CCGG	5 cut(s)	24, 49, 63, 81, 690
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	3 cut(s)	512, 571, 754
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	5 cut(s)	273, 391, 516, 862, 1110
BsoBI	CYCGRG	1 cut(s)	689
Bsp1286I	GDGCHC	1 cut(s)	1189
Bsp143I	GATC	9 cut(s)	412, 437, 652, 766, 807, 951, 955, 1075, 1079
BspACI	CCGC	3 cut(s)	7, 19, 1095
BspANI	GGCC	5 cut(s)	273, 391, 516, 862, 1110
BspCNI	CTCAG	2 cut(s)	127, 1158
BspDI	ATCGAT	2 cut(s)	954, 1078
BspLI	GGNNCC	4 cut(s)	363, 630, 639, 1159
BspMAI	CTGCAG	1 cut(s)	660
BspPI	GGATC	1 cut(s)	445
BsrBI	CCGCTC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	3 cut(s)	316, 851, 885
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	143, 689
BssMI	GATC	9 cut(s)	412, 437, 652, 766, 807, 951, 955, 1075, 1079
Bst2UI	CCWGG	3 cut(s)	144, 507, 859
Bst4CI	ACNGT	4 cut(s)	44, 102, 265, 833
BstBAI	YACGTR	1 cut(s)	612
BstC8I	GCNNGC	3 cut(s)	468, 1112, 1179
BstDEI	CTNAG	3 cut(s)	135, 1062, 1166
BstF5I	GGATG	6 cut(s)	392, 763, 777, 1036, 1076, 1107
BstKTI	GATC	9 cut(s)	415, 440, 655, 769, 810, 954, 958, 1078, 1082
BstMBI	GATC	9 cut(s)	412, 437, 652, 766, 807, 951, 955, 1075, 1079
BstMCI	CGRYCG	2 cut(s)	954, 958
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 24, 90
BstNI	CCWGG	3 cut(s)	144, 507, 859
BstPAI	GACNNNNGTC	1 cut(s)	1136
BstSCI	CCNGG	5 cut(s)	142, 505, 688, 689, 857
BstSFI	CTRYAG	1 cut(s)	656
BstV1I	GCAGC	2 cut(s)	1047, 1101
BstV2I	GAAGAC	2 cut(s)	96, 452
Bsu15I	ATCGAT	2 cut(s)	954, 1078
BsuI	GTATCC	1 cut(s)	1051
BsuRI	GGCC	5 cut(s)	273, 391, 516, 862, 1110
BsuTUI	ATCGAT	2 cut(s)	954, 1078
BtsCI	GGATG	6 cut(s)	392, 763, 777, 1036, 1076, 1107
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	468, 1112, 1179
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	3 cut(s)	515, 638, 1158
Cfr9I	CCCGGG	1 cut(s)	689
ClaI	ATCGAT	2 cut(s)	954, 1078
CviAII	CATG	6 cut(s)	479, 781, 1027, 1054, 1098, 1126
DdeI	CTNAG	3 cut(s)	135, 1062, 1166
DpnI	GATC	9 cut(s)	414, 439, 654, 768, 809, 953, 957, 1077, 1081
DpnII	GATC	9 cut(s)	412, 437, 652, 766, 807, 951, 955, 1075, 1079
DraI	TTTAAA	1 cut(s)	1173
EaeI	YGGCCR	2 cut(s)	389, 860
Eco24I	GRGCYC	1 cut(s)	1189
Eco32I	GATATC	1 cut(s)	1024
Eco47I	GGWCC	2 cut(s)	638, 1158
Eco57I	CTGAAG	1 cut(s)	225
Eco72I	CACGTG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	689
EcoO109I	RGGNCCY	2 cut(s)	638, 1158
EcoRII	CCWGG	3 cut(s)	142, 505, 857
EcoRV	GATATC	1 cut(s)	1024
EcoT38I	GRGCYC	1 cut(s)	1189
FaeI	CATG	6 cut(s)	482, 784, 1030, 1057, 1101, 1129
FalI	AAGNNNNNCTT	2 cut(s)	727, 759
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	6 cut(s)	478, 780, 1026, 1053, 1097, 1125
Fnu4HI	GCNGC	4 cut(s)	7, 19, 1036, 1090
FokI	GGATG	6 cut(s)	399, 770, 784, 1043, 1083, 1114
FriOI	GRGCYC	1 cut(s)	1189
Fsp4HI	GCNGC	4 cut(s)	7, 19, 1036, 1090
FspBI	CTAG	3 cut(s)	452, 527, 776
GluI	GCNGC	4 cut(s)	7, 19, 1036, 1090
GsuI	CTGGAG	3 cut(s)	528, 868, 912
HaeIII	GGCC	5 cut(s)	273, 391, 516, 862, 1110
HapII	CCGG	5 cut(s)	24, 49, 63, 81, 690
Hin1II	CATG	6 cut(s)	482, 784, 1030, 1057, 1101, 1129
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HinfI	GANTC	7 cut(s)	59, 137, 197, 713, 820, 1122, 1137
HpaII	CCGG	5 cut(s)	24, 49, 63, 81, 690
HphI	GGTGA	3 cut(s)	132, 1018, 1141
Hpy166II	GTNNAC	2 cut(s)	548, 970
Hpy188I	TCNGA	4 cut(s)	223, 771, 990, 1167
Hpy188III	TCNNGA	5 cut(s)	295, 320, 410, 650, 929
Hpy8I	GTNNAC	2 cut(s)	548, 970
Hpy99I	CGWCG	1 cut(s)	598
HpyAV	CCTTC	2 cut(s)	263, 729
HpyCH4III	ACNGT	4 cut(s)	44, 102, 265, 833
HpyCH4IV	ACGT	2 cut(s)	327, 611
HpyCH4V	TGCA	3 cut(s)	470, 615, 658
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 24, 90
HpyF3I	CTNAG	3 cut(s)	135, 1062, 1166
HpySE526I	ACGT	2 cut(s)	327, 611
Hsp92II	CATG	6 cut(s)	482, 784, 1030, 1057, 1101, 1129
Kzo9I	GATC	9 cut(s)	412, 437, 652, 766, 807, 951, 955, 1075, 1079
LmnI	GCTCC	3 cut(s)	26, 541, 1097
Lsp1109I	GCAGC	2 cut(s)	1047, 1101
LweI	GCATC	1 cut(s)	762
MaeI	CTAG	3 cut(s)	452, 527, 776
MaeII	ACGT	2 cut(s)	327, 611
MaeIII	GTNAC	6 cut(s)	44, 138, 305, 340, 739, 1129
MalI	GATC	9 cut(s)	414, 439, 654, 768, 809, 953, 957, 1077, 1081
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	9 cut(s)	412, 437, 652, 766, 807, 951, 955, 1075, 1079
MboII	GAAGA	6 cut(s)	96, 99, 193, 347, 457, 817
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	1189
MlsI	TGGCCA	2 cut(s)	391, 862
MluCI	AATT	9 cut(s)	184, 258, 471, 495, 581, 600, 678, 1001, 1010
MluNI	TGGCCA	2 cut(s)	391, 862
MlyI	GAGTC	3 cut(s)	146, 206, 1146
MmeI	TCCRAC	4 cut(s)	132, 201, 563, 589
Mox20I	TGGCCA	2 cut(s)	391, 862
MroXI	GAANNNNTTC	2 cut(s)	58, 185
MscI	TGGCCA	2 cut(s)	391, 862
MseI	TTAA	2 cut(s)	603, 1172
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	2 cut(s)	391, 862
MspI	CCGG	5 cut(s)	24, 49, 63, 81, 690
MspR9I	CCNGG	5 cut(s)	144, 507, 690, 691, 859
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	3 cut(s)	144, 507, 859
MwoI	GCNNNNNNNGC	3 cut(s)	15, 24, 90
NciI	CCSGG	2 cut(s)	690, 691
NdeII	GATC	9 cut(s)	412, 437, 652, 766, 807, 951, 955, 1075, 1079
NlaIII	CATG	6 cut(s)	482, 784, 1030, 1057, 1101, 1129
NlaIV	GGNNCC	4 cut(s)	363, 630, 639, 1159
NmeAIII	GCCGAG	1 cut(s)	1065
NmuCI	GTSAC	5 cut(s)	44, 138, 305, 739, 1129
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PdmI	GAANNNNTTC	2 cut(s)	58, 185
PfeI	GAWTC	4 cut(s)	59, 713, 820, 1122
PfoI	TCCNGGA	1 cut(s)	505
PkrI	GCNGC	4 cut(s)	8, 20, 1037, 1091
Ple19I	CGATCG	2 cut(s)	954, 958
PleI	GAGTC	3 cut(s)	145, 205, 1145
PmaCI	CACGTG	1 cut(s)	612
PmlI	CACGTG	1 cut(s)	612
PpsI	GAGTC	3 cut(s)	145, 205, 1145
Ppu21I	YACGTR	1 cut(s)	612
PpuMI	RGGWCCY	2 cut(s)	638, 1158
PshAI	GACNNNNGTC	1 cut(s)	1136
Psp5II	RGGWCCY	2 cut(s)	638, 1158
Psp6I	CCWGG	3 cut(s)	142, 505, 857
PspCI	CACGTG	1 cut(s)	612
PspGI	CCWGG	3 cut(s)	142, 505, 857
PspN4I	GGNNCC	4 cut(s)	363, 630, 639, 1159
PspPI	GGNCC	3 cut(s)	515, 638, 1158
PspPPI	RGGWCCY	2 cut(s)	638, 1158
PstI	CTGCAG	1 cut(s)	660
PvuI	CGATCG	2 cut(s)	954, 958
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	603, 1172
SatI	GCNGC	4 cut(s)	7, 19, 1036, 1090
Sau3AI	GATC	9 cut(s)	412, 437, 652, 766, 807, 951, 955, 1075, 1079
Sau96I	GGNCC	3 cut(s)	515, 638, 1158
SchI	GAGTC	3 cut(s)	146, 206, 1146
ScrFI	CCNGG	5 cut(s)	144, 507, 690, 691, 859
SduI	GDGCHC	1 cut(s)	1189
SfaNI	GCATC	1 cut(s)	762
SfcI	CTRYAG	1 cut(s)	656
SinI	GGWCC	2 cut(s)	638, 1158
SmaI	CCCGGG	1 cut(s)	691
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	3 cut(s)	381, 642, 1016
SmoI	CTYRAG	3 cut(s)	381, 642, 1016
Sse9I	AATT	9 cut(s)	184, 258, 471, 495, 581, 600, 678, 1001, 1010
SsiI	CCGC	3 cut(s)	7, 19, 1095
SspMI	CTAG	3 cut(s)	452, 527, 776
StyD4I	CCNGG	5 cut(s)	142, 505, 688, 689, 857
TaaI	ACNGT	4 cut(s)	44, 102, 265, 833
TaiI	ACGT	2 cut(s)	330, 614
TaqI	TCGA	5 cut(s)	596, 950, 954, 1078, 1120
TasI	AATT	9 cut(s)	184, 258, 471, 495, 581, 600, 678, 1001, 1010
TauI	GCSGC	2 cut(s)	9, 21
TfiI	GAWTC	4 cut(s)	59, 713, 820, 1122
Tru1I	TTAA	2 cut(s)	603, 1172
Tru9I	TTAA	2 cut(s)	603, 1172
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	5 cut(s)	44, 138, 305, 739, 1129
TseI	GCWGC	2 cut(s)	1035, 1089
Tsp45I	GTSAC	5 cut(s)	44, 138, 305, 739, 1129
TspDTI	ATGAA	4 cut(s)	579, 774, 1042, 1114
TspGWI	ACGGA	3 cut(s)	177, 265, 293
TspMI	CCCGGG	1 cut(s)	689
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	2 cut(s)	638, 1158
XapI	RAATTY	2 cut(s)	184, 581
XmaI	CCCGGG	1 cut(s)	689
XmnI	GAANNNNTTC	2 cut(s)	58, 185
XspI	CTAG	3 cut(s)	452, 527, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.