DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55150 AT1G55150 |
| fragaria_vesca | FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 FvH4_6g33220 |
| malus_domestica | MD09G1194200.v1.1 MD17G1174700.v1.1 |
| prunus_persica | Prupe.3G019300_v2.0.a1 Prupe.3G019300_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 Prupe.3G050700_v2.0.a1 |
| pyrus_communis | pycom09g11070 |
| rosa_chinensis | RchiOBHm_Chr2g0142931 |
| rosa_laevigata | RLG00000019997 |
| rosa_multiflora | Rmu_sc0028648.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00102220 Rroxscaffold_2G00103260 |
| rosa_rugosa | Rorug02G0377000 Rorug02G0377100 Rorug02G0377200 |
| rosa_samantha | Rh2AG430000 Rh2BG439000 Rh2CG362000 Rh2CG415500 Rh2DG449000 |
| rosa_wichuraiana | Rw2G035130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 21 |
| AciI | CCGC | 2 cut(s) | 7, 19 |
| AcsI | RAATTY | 2 cut(s) | 122, 157 |
| AfaI | GTAC | 1 cut(s) | 41 |
| AgsI | TTSAA | 2 cut(s) | 182, 245 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 113, 145 |
| AoxI | GGCC | 1 cut(s) | 247 |
| ApoI | RAATTY | 2 cut(s) | 122, 157 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 158 |
| AsuC2I | CCSGG | 1 cut(s) | 297 |
| AsuHPI | GGTGA | 2 cut(s) | 105, 165 |
| BccI | CCATC | 2 cut(s) | 94, 128 |
| BceAI | ACGGC | 1 cut(s) | 234 |
| BcnI | CCSGG | 1 cut(s) | 297 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 24 |
| BisI | GCNGC | 2 cut(s) | 7, 19 |
| BlsI | GCNGC | 2 cut(s) | 8, 20 |
| Bme1390I | CCNGG | 1 cut(s) | 297 |
| BmrFI | CCNGG | 1 cut(s) | 297 |
| BmrI | ACTGGG | 1 cut(s) | 297 |
| BmuI | ACTGGG | 1 cut(s) | 297 |
| BpuMI | CCSGG | 1 cut(s) | 297 |
| BsaJI | CCNNGG | 1 cut(s) | 116 |
| BsaWI | WCCGGW | 1 cut(s) | 48 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 5, 35 |
| Bse118I | RCCGGY | 1 cut(s) | 77 |
| Bse1I | ACTGG | 1 cut(s) | 292 |
| BseDI | CCNNGG | 1 cut(s) | 116 |
| BseGI | GGATG | 1 cut(s) | 139 |
| BseNI | ACTGG | 1 cut(s) | 292 |
| BseRI | GAGGAG | 1 cut(s) | 227 |
| BshFI | GGCC | 1 cut(s) | 249 |
| BsiSI | CCGG | 4 cut(s) | 24, 49, 78, 296 |
| BsnI | GGCC | 1 cut(s) | 249 |
| Bsp143I | GATC | 1 cut(s) | 267 |
| BspACI | CCGC | 2 cut(s) | 7, 19 |
| BspANI | GGCC | 1 cut(s) | 249 |
| BsrBI | CCGCTC | 1 cut(s) | 21 |
| BsrFI | RCCGGY | 1 cut(s) | 77 |
| BsrI | ACTGG | 1 cut(s) | 292 |
| BssAI | RCCGGY | 1 cut(s) | 77 |
| BssECI | CCNNGG | 1 cut(s) | 116 |
| BssMI | GATC | 1 cut(s) | 267 |
| Bst4CI | ACNGT | 1 cut(s) | 44 |
| BstF5I | GGATG | 1 cut(s) | 139 |
| BstKTI | GATC | 1 cut(s) | 270 |
| BstMBI | GATC | 1 cut(s) | 267 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 15, 24 |
| BstSCI | CCNGG | 1 cut(s) | 295 |
| BsuRI | GGCC | 1 cut(s) | 249 |
| BtsCI | GGATG | 1 cut(s) | 139 |
| BtsIMutI | CAGTG | 1 cut(s) | 285 |
| Cfr10I | RCCGGY | 1 cut(s) | 77 |
| Csp6I | GTAC | 1 cut(s) | 40 |
| CviJI | RGCY | 5 cut(s) | 6, 18, 81, 249, 265 |
| CviKI_1 | RGCY | 5 cut(s) | 6, 18, 81, 249, 265 |
| CviQI | GTAC | 1 cut(s) | 40 |
| DpnI | GATC | 1 cut(s) | 269 |
| DpnII | GATC | 1 cut(s) | 267 |
| FaiI | YATR | 5 cut(s) | 12, 98, 165, 219, 282 |
| Fnu4HI | GCNGC | 2 cut(s) | 7, 19 |
| FokI | GGATG | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 2 cut(s) | 7, 19 |
| GluI | GCNGC | 2 cut(s) | 7, 19 |
| HaeIII | GGCC | 1 cut(s) | 249 |
| HapII | CCGG | 4 cut(s) | 24, 49, 78, 296 |
| HinfI | GANTC | 2 cut(s) | 59, 170 |
| HpaII | CCGG | 4 cut(s) | 24, 49, 78, 296 |
| HphI | GGTGA | 2 cut(s) | 105, 165 |
| Hpy188I | TCNGA | 1 cut(s) | 199 |
| Hpy188III | TCNNGA | 2 cut(s) | 151, 271 |
| HpyAV | CCTTC | 3 cut(s) | 84, 196, 239 |
| HpyCH4III | ACNGT | 1 cut(s) | 44 |
| HpyCH4V | TGCA | 1 cut(s) | 302 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 15, 24 |
| Kzo9I | GATC | 1 cut(s) | 267 |
| LmnI | GCTCC | 1 cut(s) | 26 |
| LpnPI | CCDG | 6 cut(s) | 37, 62, 91, 189, 273, 309 |
| MaeIII | GTNAC | 4 cut(s) | 44, 73, 111, 171 |
| MalI | GATC | 1 cut(s) | 269 |
| MbiI | CCGCTC | 1 cut(s) | 21 |
| MboI | GATC | 1 cut(s) | 267 |
| MboII | GAAGA | 1 cut(s) | 166 |
| MluCI | AATT | 3 cut(s) | 122, 157, 234 |
| MlyI | GAGTC | 1 cut(s) | 179 |
| MnlI | CCTC | 5 cut(s) | 111, 199, 205, 222, 301 |
| MroXI | GAANNNNTTC | 1 cut(s) | 158 |
| MspI | CCGG | 4 cut(s) | 24, 49, 78, 296 |
| MspR9I | CCNGG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 15, 24 |
| NciI | CCSGG | 1 cut(s) | 297 |
| NdeII | GATC | 1 cut(s) | 267 |
| NmuCI | GTSAC | 4 cut(s) | 44, 73, 111, 171 |
| PdmI | GAANNNNTTC | 1 cut(s) | 158 |
| PfeI | GAWTC | 1 cut(s) | 59 |
| PkrI | GCNGC | 2 cut(s) | 8, 20 |
| PleI | GAGTC | 1 cut(s) | 178 |
| PpsI | GAGTC | 1 cut(s) | 178 |
| RsaI | GTAC | 1 cut(s) | 41 |
| RsaNI | GTAC | 1 cut(s) | 40 |
| SatI | GCNGC | 2 cut(s) | 7, 19 |
| Sau3AI | GATC | 1 cut(s) | 267 |
| SchI | GAGTC | 1 cut(s) | 179 |
| ScrFI | CCNGG | 1 cut(s) | 297 |
| SetI | ASST | 4 cut(s) | 148, 178, 210, 312 |
| Sse9I | AATT | 3 cut(s) | 122, 157, 234 |
| SsiI | CCGC | 2 cut(s) | 7, 19 |
| StyD4I | CCNGG | 1 cut(s) | 295 |
| TaaI | ACNGT | 1 cut(s) | 44 |
| TaqI | TCGA | 1 cut(s) | 150 |
| TasI | AATT | 3 cut(s) | 122, 157, 234 |
| TauI | GCSGC | 2 cut(s) | 9, 21 |
| TfiI | GAWTC | 1 cut(s) | 59 |
| TscAI | CASTG | 1 cut(s) | 292 |
| TseFI | GTSAC | 4 cut(s) | 44, 73, 111, 171 |
| Tsp45I | GTSAC | 4 cut(s) | 44, 73, 111, 171 |
| TspGWI | ACGGA | 1 cut(s) | 241 |
| TspRI | CASTG | 1 cut(s) | 292 |
| XapI | RAATTY | 2 cut(s) | 122, 157 |
| XmnI | GAANNNNTTC | 1 cut(s) | 158 |