Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005720

Physical Location & Seq

Genomic Coordinates Forward (+)

20582965 .. 20584859

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55175.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATGGACGCTGGTCAGGAGCTGATGCATCGCTAGCAGGTGACTGGGCTGAATCTCTATTCCATAGATTGAATATTGATCCTAAACAACATAAAATGAGGCGGGCCACCAGCTTGCCACGAGATGGGAATTATCTGCCTAGATCTGAGCTGGGATCATTGAACCGTAATAATTCCTTGCTTTATGCAAATATTGAAGTTTTTCGGGAATGCACTTTCCAAAGGATGTTGACGTGCATTACGGAAAACGATCTTCCTACCGAGTCTGGAGACAGTATCTATAGAAAGACGATAATGTTGATGAAATGCTGGACTGATGGAGAAGTAGCTGTTCTTGAAGATGGTTCACTACTTTTAAGTCTTTATATTGCTCTGAAGTTAGGTGTAGGTTTTACAAGGATGAAAGGTTGTATCGATTTAAATCTAGAGGAACTTAGTTTACTTCCCTCTTGCTTTTCCGAAGACTCTGAGAACTTTCCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF

Protein Analysis

161

Amino Acids

18.14

Weight (kDa)

4.95

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24300 AT1G24300 AT1G24300 AT1G27430 AT1G27430 AT1G27430 AT1G55175
fragaria_vesca	FvH4_4g23270 FvH4_4g23270 FvH4_4g23270 FvH4_4g23270
malus_domestica	MD13G1123200.v1.1 MD16G1124000.v1.1
prunus_persica	Prupe.1G221600_v2.0.a1 Prupe.1G221600_v2.0.a1
pyrus_communis	pycom13g10760 pycom16g10600
rosa_chinensis	RchiOBHm_Chr4g0429641
rosa_laevigata	RLG00000007056
rosa_multiflora	Rmu_sc0006590.1_g000007
rosa_roxburghii	Rroxscaffold_5G00371320
rosa_rugosa	Rorug04G0237500 Rorug04G0237500
rosa_samantha	Rh4AG293400 Rh4BG299200 Rh4CG315000 Rh4DG296300
rosa_wichuraiana	Rw4G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	29
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	2 cut(s)	74, 163
AcuI	CTGAAG	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	4 cut(s)	73, 163, 197, 338
AjiI	CACGTC	1 cut(s)	234
AluBI	AGCT	5 cut(s)	23, 114, 151, 329, 482
AluI	AGCT	5 cut(s)	23, 114, 151, 329, 482
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	74, 163
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	53
AsuNHI	GCTAGC	1 cut(s)	34
BauI	CACGAG	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	468
BccI	CCATC	3 cut(s)	119, 311, 335
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	3 cut(s)	35, 141, 425
BfmI	CTRYAG	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	2 cut(s)	16, 38
BmtI	GCTAGC	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	55
BoxI	GACNNNNGTC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	1 cut(s)	288
Bsa29I	ATCGAT	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	420
BseCI	ATCGAT	1 cut(s)	414
BseGI	GGATG	3 cut(s)	10, 231, 405
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	2 cut(s)	138, 459
BseNI	ACTGG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	151
BshFI	GGCC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	79, 143, 155, 250
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	139, 460
BspDI	ATCGAT	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	29
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	2 cut(s)	74, 163
BsrI	ACTGG	1 cut(s)	50
BssMI	GATC	4 cut(s)	79, 143, 155, 250
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	167, 275
BstC8I	GCNNGC	3 cut(s)	36, 105, 116
BstDEI	CTNAG	3 cut(s)	147, 434, 468
BstF5I	GGATG	3 cut(s)	10, 231, 405
BstKTI	GATC	4 cut(s)	82, 146, 158, 253
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	4 cut(s)	79, 143, 155, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstPAI	GACNNNNGTC	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
Bsu15I	ATCGAT	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	10, 231, 405
BveI	ACCTGC	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	36, 105, 116
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	1 cut(s)	18
CviJI	RGCY	7 cut(s)	23, 50, 107, 114, 151, 329, 482
CviKI_1	RGCY	7 cut(s)	23, 50, 107, 114, 151, 329, 482
DdeI	CTNAG	3 cut(s)	147, 434, 468
DpnI	GATC	4 cut(s)	81, 145, 157, 252
DpnII	GATC	4 cut(s)	79, 143, 155, 250
DraI	TTTAAA	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	395
EcoT22I	ATGCAT	1 cut(s)	31
FaiI	YATR	5 cut(s)	66, 93, 186, 282, 366
FauI	CCCGC	1 cut(s)	96
FokI	GGATG	3 cut(s)	17, 238, 412
FspBI	CTAG	3 cut(s)	35, 141, 425
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	107
HgaI	GACGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	3 cut(s)	53, 263, 464
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	3 cut(s)	231, 347, 440
Hpy188I	TCNGA	4 cut(s)	148, 375, 460, 469
Hpy188III	TCNNGA	5 cut(s)	18, 206, 267, 335, 425
Hpy8I	GTNNAC	3 cut(s)	231, 347, 440
HpyCH4III	ACNGT	2 cut(s)	167, 275
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	29, 188, 213, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	3 cut(s)	147, 434, 468
HpySE526I	ACGT	1 cut(s)	233
Kzo9I	GATC	4 cut(s)	79, 143, 155, 250
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	3, 24, 31, 124, 137, 252, 295
LweI	GCATC	2 cut(s)	16, 38
MaeI	CTAG	3 cut(s)	35, 141, 425
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	4 cut(s)	81, 145, 157, 252
MboI	GATC	4 cut(s)	79, 143, 155, 250
MboII	GAAGA	3 cut(s)	245, 350, 473
MflI	RGATCY	1 cut(s)	143
MluCI	AATT	2 cut(s)	130, 172
MlyI	GAGTC	2 cut(s)	272, 458
MnlI	CCTC	3 cut(s)	93, 421, 457
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	3 cut(s)	356, 419, 484
Mva1269I	GAATGC	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	4 cut(s)	79, 143, 155, 250
NheI	GCTAGC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	29
PctI	GAATGC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	53
PflMI	CCANNNNNTGG	1 cut(s)	125
PleI	GAGTC	2 cut(s)	271, 458
PpsI	GAGTC	2 cut(s)	271, 458
PshAI	GACNNNNGTC	1 cut(s)	13
PspFI	CCCAGC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	105
PsrI	GAACNNNNNNTAC	2 cut(s)	423, 455
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	356, 419, 484
Sau3AI	GATC	4 cut(s)	79, 143, 155, 250
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	2 cut(s)	272, 458
SfaNI	GCATC	2 cut(s)	16, 38
SfcI	CTRYAG	1 cut(s)	280
SmiI	ATTTAAAT	1 cut(s)	420
Sse9I	AATT	2 cut(s)	130, 172
SsiI	CCGC	1 cut(s)	103
SspI	AATATT	2 cut(s)	76, 193
SspMI	CTAG	3 cut(s)	35, 141, 425
SwaI	ATTTAAAT	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	167, 275
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	414
TasI	AATT	2 cut(s)	130, 172
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	3 cut(s)	356, 419, 484
Tru9I	TTAA	3 cut(s)	356, 419, 484
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	317, 416
TspGWI	ACGGA	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	125
XbaI	TCTAGA	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	3 cut(s)	35, 141, 425
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.