Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Forward (+)

20723279 .. 20725747

Gene Structure 2469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCGGCTCTTTTAGGCAGATCCTGCCGGAAACTGAGTTTTCCGAGCTTGAGTCACGGAGCTAGGAGGGTATCGACGGAAACTGGAAAACCATTGAATCTATACTCTGCTATTAATCAAGCGCTTCACATCGCTTTGGACACCGATCCTCGGTCTTATGTCTTTGGGGAAGACGTTGGCTTTGGTGGAGTCTTTCGCTGTACAACAGGTTTAGCTGAACGATTCGGGAAAAACCGTGTCTTCAATACTCCTCTTTGTGAGCAGGGCATTGTTGGATTTGGCATTGGTCTAGCAGCAATGGGTAATCGAGCAATTGTAGAGATTCAGTTTGCAGATTATATATATCCTGCTTTTGATCAGATTGTTAATGAAGCTGCAAAGTTCAGATACCGAAGTGGTAACCAATTCAACTGTGGAGGACTTACGATAAGAGCACCATATGGAGCAGTTGGTCATGGTGGACATTACCATTCACAATCCCCTGAAGCTTTCTTTTGCCATGTCCCTGGTATTAAGGTTGTTATCCCTCGGAGTCCACGAGAAGCAAAGGGACTGTTGTTGTCATGTATCCGTGATCCAAATCCCGTTGTTTTCTTCGAACCAAAGTGGCTGTATCGTCAAGCAGTAGAAGAAGTCCCTGAGCATGACTATATGATACCTTTATCAGAAGCAGAGGTTATAAGAGAAGGCAATGACATTACACTGGTTGGATGGGGAGCTCAGCTTACCGTTATGGAACAAGCTTGTCTGGACGCGGAAAAGGAAGGAATATCATGTGAACTGATAGATCTCAAGACACTGCTTCCTTGGGACAAAGAAACCGTTGAGGCTTCAGTTAAAAAGACTGGCAGACTTCTTATAAGCCATGAAGCTCCTGTAACAGGAGGTTTTGGAGCAGAGATCTCTGCAACAATTCTGGAACGTTGCTTTTTGAAGTTAGAAGCTCCAGTAAGCAGAGTTTGTGGTCTGGATACTCCATTTCCTCTTGTGTTTGAACCATTCTACATGCCCACCAAGAACAAGATATTGGATGCAATCAAATCGACTGTGAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

352

Amino Acids

38.73

Weight (kDa)

6.27

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	33 - 206	3e-38	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	223 - 342	1.3e-36	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	680, 860
AccII	CGCG	1 cut(s)	755
AciI	CCGC	2 cut(s)	5, 755
AclI	AACGTT	1 cut(s)	922
AclWI	GGATC	3 cut(s)	15, 140, 569
AcuI	CTGAAG	2 cut(s)	504, 816
AfaI	GTAC	1 cut(s)	202
AfeI	AGCGCT	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	150, 881
AgsI	TTSAA	5 cut(s)	97, 244, 409, 934, 995
AjnI	CCWGG	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	1010, 1042
Alw21I	GWGCWC	2 cut(s)	436, 721
AlwI	GGATC	3 cut(s)	15, 140, 569
AlwNI	CAGNNNCTG	1 cut(s)	24
Aor51HI	AGCGCT	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	293, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	124
AsuII	TTCGAA	1 cut(s)	597
BaeI	ACNNNNGTAYC	2 cut(s)	379, 412
BanII	GRGCYC	1 cut(s)	721
BauI	CACGAG	1 cut(s)	537
BbsI	GAAGAC	2 cut(s)	177, 232
Bbv12I	GWGCWC	2 cut(s)	436, 721
BbvI	GCAGC	2 cut(s)	305, 361
BccI	CCATC	1 cut(s)	705
BcgI	CGANNNNNNTGC	2 cut(s)	1023, 1057
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	2 cut(s)	578, 964
BclI	TGATCA	1 cut(s)	355
BfaI	CTAG	3 cut(s)	63, 290, 1057
BfoI	RGCGCY	1 cut(s)	125
BfuI	GTATCC	2 cut(s)	578, 964
BglII	AGATCT	2 cut(s)	787, 900
BisI	GCNGC	3 cut(s)	6, 294, 375
BlpI	GCTNAGC	1 cut(s)	720
BlsI	GCNGC	3 cut(s)	7, 295, 376
Bme1390I	CCNGG	1 cut(s)	507
BmrFI	CCNGG	1 cut(s)	507
BmsI	GCATC	1 cut(s)	1021
BpiI	GAAGAC	2 cut(s)	177, 232
BpmI	CTGGAG	1 cut(s)	930
Bpu10I	CCTNAGC	1 cut(s)	639
Bpu1102I	GCTNAGC	1 cut(s)	720
Bpu14I	TTCGAA	1 cut(s)	597
BpuEI	CTTGAG	2 cut(s)	70, 776
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	4 cut(s)	149, 505, 527, 806
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 881
Bse1I	ACTGG	4 cut(s)	88, 708, 850, 947
Bse3DI	GCAATG	2 cut(s)	303, 697
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	149, 505, 527, 806
BseGI	GGATG	2 cut(s)	716, 1036
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	150, 881
BseMI	GCAATG	2 cut(s)	303, 697
BseMII	CTCAG	3 cut(s)	26, 630, 734
BseNI	ACTGG	4 cut(s)	88, 708, 850, 947
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	305, 361
Bsh1236I	CGCG	1 cut(s)	755
BsiHKAI	GWGCWC	2 cut(s)	436, 721
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	4 cut(s)	488, 564, 620, 824
BslI	CCNNNNNNNGG	2 cut(s)	150, 881
BsmFI	GGGAC	4 cut(s)	488, 564, 620, 824
Bsp119I	TTCGAA	1 cut(s)	597
Bsp1286I	GDGCHC	2 cut(s)	436, 721
Bsp1407I	TGTACA	1 cut(s)	200
Bsp143I	GATC	6 cut(s)	20, 145, 355, 574, 787, 900
Bsp1720I	GCTNAGC	1 cut(s)	720
BspACI	CCGC	2 cut(s)	5, 755
BspCNI	CTCAG	3 cut(s)	27, 631, 733
BspFNI	CGCG	1 cut(s)	755
BspPI	GGATC	3 cut(s)	15, 140, 569
BspT104I	TTCGAA	1 cut(s)	597
BsrDI	GCAATG	2 cut(s)	303, 697
BsrGI	TGTACA	1 cut(s)	200
BsrI	ACTGG	4 cut(s)	88, 708, 850, 947
BssECI	CCNNGG	4 cut(s)	149, 505, 527, 806
BssMI	GATC	6 cut(s)	20, 145, 355, 574, 787, 900
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	806
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	6 cut(s)	236, 413, 555, 730, 823, 1048
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	597
BstDEI	CTNAG	3 cut(s)	35, 639, 720
BstEII	GGTNACC	1 cut(s)	398
BstENI	CCTNNNNNAGG	1 cut(s)	879
BstF5I	GGATG	2 cut(s)	716, 1036
BstFNI	CGCG	1 cut(s)	755
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	6 cut(s)	23, 148, 358, 577, 790, 903
BstMBI	GATC	6 cut(s)	20, 145, 355, 574, 787, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	1009
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	505
BstUI	CGCG	1 cut(s)	755
BstV1I	GCAGC	2 cut(s)	305, 361
BstV2I	GAAGAC	2 cut(s)	177, 232
BstX2I	RGATCY	3 cut(s)	20, 787, 900
BstXI	CCANNNNNNTGG	1 cut(s)	506
BstYI	RGATCY	3 cut(s)	20, 787, 900
BsuI	GTATCC	2 cut(s)	578, 964
BtgZI	GCGATG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	716, 1036
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	2 cut(s)	701, 797
CaiI	CAGNNNCTG	1 cut(s)	24
CfoI	GCGC	1 cut(s)	124
CseI	GACGC	1 cut(s)	761
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	7 cut(s)	455, 500, 564, 644, 774, 866, 1006
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	3 cut(s)	35, 639, 720
DpnI	GATC	6 cut(s)	22, 147, 357, 576, 789, 902
DpnII	GATC	6 cut(s)	20, 145, 355, 574, 787, 900
Ecl136II	GAGCTC	1 cut(s)	719
Eco130I	CCWWGG	1 cut(s)	806
Eco24I	GRGCYC	1 cut(s)	721
Eco47III	AGCGCT	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	719
Eco57I	CTGAAG	2 cut(s)	504, 816
Eco91I	GGTNACC	1 cut(s)	398
EcoICRI	GAGCTC	1 cut(s)	719
EcoNI	CCTNNNNNAGG	1 cut(s)	879
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	806
EcoT38I	GRGCYC	1 cut(s)	721
ErhI	CCWWGG	1 cut(s)	806
FaeI	CATG	7 cut(s)	458, 503, 567, 647, 777, 869, 1009
FaqI	GGGAC	4 cut(s)	488, 564, 620, 824
FatI	CATG	7 cut(s)	454, 499, 563, 643, 773, 865, 1005
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	6, 294, 375
FokI	GGATG	2 cut(s)	723, 1043
FriOI	GRGCYC	1 cut(s)	721
Fsp4HI	GCNGC	3 cut(s)	6, 294, 375
FspBI	CTAG	3 cut(s)	63, 290, 1057
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	3 cut(s)	6, 294, 375
GsuI	CTGGAG	1 cut(s)	930
HaeII	RGCGCY	1 cut(s)	125
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	761
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	7 cut(s)	458, 503, 567, 647, 777, 869, 1009
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HindIII	AAGCTT	2 cut(s)	486, 741
HinfI	GANTC	6 cut(s)	52, 97, 189, 222, 322, 532
HpaII	CCGG	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	461, 536, 779
Hpy188I	TCNGA	5 cut(s)	45, 360, 386, 531, 667
Hpy188III	TCNNGA	5 cut(s)	226, 749, 793, 917, 968
Hpy8I	GTNNAC	3 cut(s)	461, 536, 779
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	680, 758
HpyCH4III	ACNGT	6 cut(s)	236, 413, 555, 730, 823, 1048
HpyCH4IV	ACGT	2 cut(s)	174, 922
HpyCH4V	TGCA	4 cut(s)	332, 377, 908, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	3 cut(s)	35, 639, 720
HpySE526I	ACGT	2 cut(s)	174, 922
Hsp92II	CATG	7 cut(s)	458, 503, 567, 647, 777, 869, 1009
HspAI	GCGC	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	6 cut(s)	20, 145, 355, 574, 787, 900
LmnI	GCTCC	6 cut(s)	59, 443, 716, 877, 893, 949
Lsp1109I	GCAGC	2 cut(s)	305, 361
LweI	GCATC	1 cut(s)	1021
MaeI	CTAG	3 cut(s)	63, 290, 1057
MaeII	ACGT	2 cut(s)	174, 922
MaeIII	GTNAC	3 cut(s)	53, 398, 877
MalI	GATC	6 cut(s)	22, 147, 357, 576, 789, 902
MboI	GATC	6 cut(s)	20, 145, 355, 574, 787, 900
MboII	GAAGA	4 cut(s)	182, 232, 586, 641
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	3 cut(s)	20, 787, 900
MhlI	GDGCHC	2 cut(s)	436, 721
MluCI	AATT	4 cut(s)	312, 404, 912, 1051
MlyI	GAGTC	3 cut(s)	61, 198, 541
MmeI	TCCRAC	2 cut(s)	253, 688
MnlI	CCTC	9 cut(s)	60, 159, 261, 410, 537, 667, 820, 878, 993
MseI	TTAA	4 cut(s)	114, 366, 513, 837
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	1 cut(s)	507
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	507
MvnI	CGCG	1 cut(s)	755
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	6 cut(s)	20, 145, 355, 574, 787, 900
NlaIII	CATG	7 cut(s)	458, 503, 567, 647, 777, 869, 1009
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	1009
NspV	TTCGAA	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	535
PfeI	GAWTC	3 cut(s)	97, 222, 322
PkrI	GCNGC	3 cut(s)	7, 295, 376
PleI	GAGTC	3 cut(s)	60, 197, 540
PpsI	GAGTC	3 cut(s)	60, 197, 540
PshBI	ATTAAT	1 cut(s)	114
PsiI	TTATAA	2 cut(s)	680, 860
Psp124BI	GAGCTC	1 cut(s)	721
Psp1406I	AACGTT	1 cut(s)	922
Psp6I	CCWGG	1 cut(s)	505
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	24
PsuI	RGATCY	3 cut(s)	20, 787, 900
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	721
SaqAI	TTAA	4 cut(s)	114, 366, 513, 837
SatI	GCNGC	3 cut(s)	6, 294, 375
Sau3AI	GATC	6 cut(s)	20, 145, 355, 574, 787, 900
SchI	GAGTC	3 cut(s)	61, 198, 541
ScrFI	CCNGG	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	436, 721
SfaNI	GCATC	1 cut(s)	1021
SfuI	TTCGAA	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	49, 791
SmoI	CTYRAG	2 cut(s)	49, 791
Sse9I	AATT	4 cut(s)	312, 404, 912, 1051
SsiI	CCGC	2 cut(s)	5, 755
SspMI	CTAG	3 cut(s)	63, 290, 1057
SstI	GAGCTC	1 cut(s)	721
StyD4I	CCNGG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	806
TaaI	ACNGT	6 cut(s)	236, 413, 555, 730, 823, 1048
TaiI	ACGT	2 cut(s)	177, 925
TaqI	TCGA	4 cut(s)	74, 307, 597, 1043
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	4 cut(s)	312, 404, 912, 1051
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	97, 222, 322
Tru1I	TTAA	4 cut(s)	114, 366, 513, 837
Tru9I	TTAA	4 cut(s)	114, 366, 513, 837
TscAI	CASTG	2 cut(s)	708, 804
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	293, 374
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	384, 882
TspGWI	ACGGA	3 cut(s)	72, 92, 560
TspRI	CASTG	2 cut(s)	708, 804
VspI	ATTAAT	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	879
XceI	RCATGY	1 cut(s)	1009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XspI	CTAG	3 cut(s)	63, 290, 1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.