Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Reverse (-)

67116028 .. 67118310

Gene Structure 2283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0487800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCAGACAAATGTACCAGAAAGAAAATAGTGTCAGTCTTCGAAAACTTTCCTGAAGAAATCATACAAGGAATCTTCGTGAAGTTGCCCATCAAATCTTTAGTCCAATGCACCGCAGTGTGCAAATCATGGAGATCTCTAATCATAAGCTCTACCTTCATTGATGCCCATCTCAGGCGCATAGTCCAATCCAACAGTCAGACCAACGTTTATGGCCTCTTTCTACTAACTGCATGTACATCTGAGAAGCTTCTTTTCTCGTTGCATTTGGATAACCCTGCATTCGATGAGTACACCAAGCTCACAAGTCCACTCACTACTTTGTTCAAAAAGAAACTAAGAAAGTACTCAGAAAAGGAGAGCGATTTCTATGTTGCTGGAACTTGTAATGGCCTGGTGTGCCTTGCTTCTAAATATACCACAATAATTTGGAATCCTTGTATCAGAAAGTATATGGTTTTGCCTAGGCCAGTTACTCTCGGCTTCGAATCTGATTGGGCAAGGTGCGACTTTGGCTATGATTCACACACCAATGACTATAAGGTTTTGAGAAGTGTGAACAACTTTTATGGCAAGCGAACTGCATGCGAGGTTTGGTCGTTAGCTAGAGGTTCTTGGAAGATTATCAGTGCTGGTGTTGTTCCAGCGTACTTTAGACCTCTTGATTATTCGGATAGAGGATATGATGTTTCCTTATCAAACAAACATGCTTTTGTCAATGGAGCTTTACATTGGATTCCAAGCCCCAAAGGGTATCCCGATGAAGTCAGATATATTGTTTCTTTTGATCTGTTCAGTGAGCGATTTGCCAAGATAATGATACCAACGGCCTCTGAAATAGCACATGTTTCTATTTCAAGATACAGGGAGTCTCTTGCCTTGTTGGTTCAGAGTTCGGAGAAATTGCTCCACTTGTGGGTGATGAAAGAGTATAGTGTGGTGGAATCCTGGACTAAATTATCAACTTTACCCTTGCAAGAACGTATCTGGTATCCACTTGGTTTTCGGAAAAGTGGTGAAGTATTGCTCAACATGTACCCTTTTGGGGTGCAATTAGTAGACCCTAACACCGGACAAATTACAAGTGAGCTAAATCAACGACAGATGTACAATTTCATGGATTCTTTTGTGCAGAGCCTTCTCTTGTTTGACCAACCCAATGCAATATGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

391

Amino Acids

44.97

Weight (kDa)

8.92

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 52	8.6e-08	F-box domain
F-box-like	PF12937	16 - 49	2.2e-08	F-box-like
FBA_3	PF08268	108 - 347	2.9e-25	F-box associated beta propeller domain
FBA_1	PF07734	110 - 329	2.7e-24	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1059
AciI	CCGC	1 cut(s)	114
AclI	AACGTT	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	7 cut(s)	16, 238, 293, 347, 650, 1037, 1109
AfiI	CCNNNNNNNGG	4 cut(s)	174, 916, 1045, 1070
AflIII	ACRYGT	2 cut(s)	844, 1032
AgsI	TTSAA	2 cut(s)	328, 858
AjnI	CCWGG	2 cut(s)	393, 947
AleI	CACNNNNGTG	1 cut(s)	116
AluBI	AGCT	6 cut(s)	150, 250, 301, 605, 725, 1090
AluI	AGCT	6 cut(s)	150, 250, 301, 605, 725, 1090
Alw26I	GTCTC	1 cut(s)	876
AoxI	GGCC	4 cut(s)	214, 391, 467, 828
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
Asp700I	GAANNNNTTC	1 cut(s)	48
AspA2I	CCTAGG	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	180
AsuHPI	GGTGA	2 cut(s)	931, 1028
AsuII	TTCGAA	2 cut(s)	42, 486
AvrII	CCTAGG	1 cut(s)	464
BaeI	ACNNNNGTAYC	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
BbsI	GAAGAC	1 cut(s)	31
BccI	CCATC	2 cut(s)	98, 177
BceAI	ACGGC	1 cut(s)	843
BcgI	CGANNNNNNTGC	2 cut(s)	567, 601
BciT130I	CCWGG	2 cut(s)	395, 949
BciVI	GTATCC	2 cut(s)	765, 1002
BcoDI	GTCTC	1 cut(s)	876
BfaI	CTAG	2 cut(s)	465, 606
BfuI	GTATCC	2 cut(s)	765, 1002
BglII	AGATCT	1 cut(s)	134
BlnI	CCTAGG	1 cut(s)	464
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	395, 949
BmrFI	CCNGG	2 cut(s)	395, 949
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	31
Bpu14I	TTCGAA	2 cut(s)	42, 486
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	464
BsaWI	WCCGGW	1 cut(s)	1070
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 916, 1045, 1070
Bse1I	ACTGG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	395, 949
BseDI	CCNNGG	1 cut(s)	464
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	4 cut(s)	174, 916, 1045, 1070
BseMII	CTCAG	3 cut(s)	187, 234, 363
BseNI	ACTGG	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	1151
BshFI	GGCC	4 cut(s)	216, 393, 469, 830
BsiSI	CCGG	1 cut(s)	1071
BslI	CCNNNNNNNGG	4 cut(s)	174, 916, 1045, 1070
BsmAI	GTCTC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	216, 393, 469, 830
Bsp119I	TTCGAA	2 cut(s)	42, 486
Bsp1407I	TGTACA	2 cut(s)	236, 1107
Bsp143I	GATC	2 cut(s)	134, 787
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	4 cut(s)	216, 393, 469, 830
BspCNI	CTCAG	3 cut(s)	186, 235, 362
BspT104I	TTCGAA	2 cut(s)	42, 486
BsrGI	TGTACA	2 cut(s)	236, 1107
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	464
BssMI	GATC	2 cut(s)	134, 787
BssT1I	CCWWGG	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	395, 949
Bst4CI	ACNGT	1 cut(s)	197
BstAUI	TGTACA	2 cut(s)	236, 1107
BstBI	TTCGAA	2 cut(s)	42, 486
BstC8I	GCNNGC	2 cut(s)	575, 586
BstDEI	CTNAG	4 cut(s)	173, 243, 338, 349
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	2 cut(s)	137, 790
BstMAI	GTCTC	1 cut(s)	876
BstMBI	GATC	2 cut(s)	134, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	399, 513
BstNI	CCWGG	2 cut(s)	395, 949
BstNSI	RCATGY	5 cut(s)	237, 588, 710, 848, 1036
BstSCI	CCNGG	2 cut(s)	393, 947
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuI	GTATCC	2 cut(s)	765, 1002
BsuRI	GGCC	4 cut(s)	216, 393, 469, 830
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	123, 634, 802
Cac8I	GCNNGC	2 cut(s)	575, 586
CfoI	GCGC	1 cut(s)	180
Csp6I	GTAC	7 cut(s)	15, 237, 292, 346, 649, 1036, 1108
CviAII	CATG	7 cut(s)	129, 234, 585, 707, 845, 1033, 1117
CviQI	GTAC	7 cut(s)	15, 237, 292, 346, 649, 1036, 1108
DdeI	CTNAG	4 cut(s)	173, 243, 338, 349
DpnI	GATC	2 cut(s)	136, 789
DpnII	GATC	2 cut(s)	134, 787
Eco130I	CCWWGG	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	2 cut(s)	393, 947
EcoT14I	CCWWGG	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	464
FaeI	CATG	7 cut(s)	132, 237, 588, 710, 848, 1036, 1120
FatI	CATG	7 cut(s)	128, 233, 584, 706, 844, 1032, 1116
FblI	GTMKAC	1 cut(s)	1059
FspBI	CTAG	2 cut(s)	465, 606
GlaI	GCGC	1 cut(s)	179
HaeIII	GGCC	4 cut(s)	216, 393, 469, 830
HapII	CCGG	1 cut(s)	1071
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	7 cut(s)	132, 237, 588, 710, 848, 1036, 1120
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	8 cut(s)	72, 433, 488, 521, 736, 869, 944, 1121
HpaII	CCGG	1 cut(s)	1071
HphI	GGTGA	2 cut(s)	931, 1028
Hpy166II	GTNNAC	4 cut(s)	294, 311, 559, 1060
Hpy188III	TCNNGA	5 cut(s)	53, 79, 662, 758, 858
Hpy8I	GTNNAC	4 cut(s)	294, 311, 559, 1060
HpyAV	CCTTC	2 cut(s)	166, 1148
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	207, 982
HpyF10VI	GCNNNNNNNGC	2 cut(s)	399, 513
HpyF3I	CTNAG	4 cut(s)	173, 243, 338, 349
HpySE526I	ACGT	2 cut(s)	207, 982
Hsp92II	CATG	7 cut(s)	132, 237, 588, 710, 848, 1036, 1120
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	134, 787
LmnI	GCTCC	2 cut(s)	722, 912
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	465, 606
MaeII	ACGT	2 cut(s)	207, 982
MaeIII	GTNAC	2 cut(s)	472, 1169
MalI	GATC	2 cut(s)	136, 789
MboI	GATC	2 cut(s)	134, 787
MboII	GAAGA	4 cut(s)	31, 67, 68, 631
MflI	RGATCY	1 cut(s)	134
MluCI	AATT	6 cut(s)	426, 902, 956, 1052, 1077, 1111
MlyI	GAGTC	1 cut(s)	878
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	227, 583, 602, 669, 671, 841
MroXI	GAANNNNTTC	1 cut(s)	48
MslI	CAYNNNNRTG	2 cut(s)	116, 531
MspI	CCGG	1 cut(s)	1071
MspR9I	CCNGG	2 cut(s)	395, 949
Mva1269I	GAATGC	1 cut(s)	281
MvaI	CCWGG	2 cut(s)	395, 949
MwoI	GCNNNNNNNGC	2 cut(s)	399, 513
NdeII	GATC	2 cut(s)	134, 787
NlaIII	CATG	7 cut(s)	132, 237, 588, 710, 848, 1036, 1120
NmeAIII	GCCGAG	1 cut(s)	459
NspI	RCATGY	5 cut(s)	237, 588, 710, 848, 1036
NspV	TTCGAA	2 cut(s)	42, 486
OliI	CACNNNNGTG	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	588
PciI	ACATGT	2 cut(s)	844, 1032
PctI	GAATGC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	7 cut(s)	72, 433, 488, 521, 736, 944, 1121
PfoI	TCCNGGA	1 cut(s)	947
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
PscI	ACATGT	2 cut(s)	844, 1032
Psp1406I	AACGTT	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	393, 947
PspGI	CCWGG	2 cut(s)	393, 947
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	7 cut(s)	16, 238, 293, 347, 650, 1037, 1109
RsaNI	GTAC	7 cut(s)	15, 237, 292, 346, 649, 1036, 1108
RseI	CAYNNNNRTG	2 cut(s)	116, 531
Sau3AI	GATC	2 cut(s)	134, 787
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	2 cut(s)	395, 949
SfaNI	GCATC	1 cut(s)	154
SfuI	TTCGAA	2 cut(s)	42, 486
SmiMI	CAYNNNNRTG	2 cut(s)	116, 531
SphI	GCATGC	1 cut(s)	588
Sse9I	AATT	6 cut(s)	426, 902, 956, 1052, 1077, 1111
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	2 cut(s)	465, 606
StyD4I	CCNGG	2 cut(s)	393, 947
StyI	CCWWGG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	2 cut(s)	210, 985
TaqI	TCGA	3 cut(s)	42, 285, 486
TasI	AATT	6 cut(s)	426, 902, 956, 1052, 1077, 1111
TatI	WGTACW	4 cut(s)	236, 291, 345, 1107
TfiI	GAWTC	7 cut(s)	72, 433, 488, 521, 736, 944, 1121
TscAI	CASTG	3 cut(s)	123, 634, 802
TspDTI	ATGAA	4 cut(s)	148, 777, 938, 1105
TspRI	CASTG	3 cut(s)	123, 634, 802
XceI	RCATGY	5 cut(s)	237, 588, 710, 848, 1036
XmaJI	CCTAGG	1 cut(s)	464
XmiI	GTMKAC	1 cut(s)	1059
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	465, 606
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.