Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Forward (+)

38028359 .. 38032047

Gene Structure 3689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGAGGAGAAGCAGCAGATTGATCAACTGGGCTACTCATACAAGGAGGAGGAGCAGCAATTACTCAACCTCCTCCGAAGCTGGAAAATCTCTCAACCTCTACTCTGCCATCAACCAAGCCCTCCACATCGCCTTGGCGTCTGATTCCCGTACTTATGTATTTGGAGAAGATGTGGGCTTCGGTGGGGTCTTCCGTTGTACCACAGGCTTGGCTGATAGGTTTGGTAAGAAAAGGGTTTTCAATACCCCTCTTTGTGAACAGGGAATTATAGGATTTGGTATTGGTCTAGCAGCTATGGGTAACAGAGCTGTTGCGGAAATCCAATTTGCAGACTATATTTTCCCCGCTTTTGATCAGATTGTCAATGAAGCTGCAAAATTTAGATACCGAAGTGGAAACCAATTTAACTGTGGAGGCTTAACCATAAGAGCGCCCTATGGCGCTGTAGGCCATGGTGGACATTACCACTCACAATCTCCTGAAGCTTTTTTCTGTCATGCTCCTGGTATCAAAGTGGTCATCCCTAGAAGCCCACGACAAGCAAAAGGCTTATTGCTTTCCTCTATACGTGATCCAAACCCTGTTGTGTTTTTTGAACCAAAGTGGTTATACAGATTGTCAGTAGAAGAGGTTCCTGAGCACGATTTCATGTTGCCGTTATCAGAAGCTGAGGTAATACGAGAGGGCAGTGACATAACGCTTGTTGGGTGGGGAGCTCAACTCTCCATAATGGAACAGGCATGTCTAGATGCTGAAAAAGATGGAATTTCCTGTGAACTGATAGACCTGCGTACTCTGATACCTTGGGATAAGGAGACAGTGGAGGCTTCTGTCAAAAAGACTGGAAGGCTTCTTATTAGTCATGAAGCTCCAGTTACAGGAGGATTTGGTGCCGAAATATCTGCTTCAATTGTTGAAAGTTGCTTCTTGAGGTTAGAAGCACCAGTCTCTAGAGTATGTGGTCTGGATACCCCCTTCCCTCTTGTGTTTGAACCCTTCTATATGCCCACGAAGAACAAGATATTGGATGCAATTAAAGCAACTGTAAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

352

Amino Acids

38.65

Weight (kDa)

7.07

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	32 - 205	4.5e-37	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	222 - 341	2e-36	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	795
AccB1I	GGYRCC	1 cut(s)	890
AciI	CCGC	2 cut(s)	314, 345
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	2 cut(s)	377, 765
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	3 cut(s)	151, 199, 793
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgsI	TTSAA	5 cut(s)	241, 596, 909, 917, 992
AjnI	CCWGG	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AluBI	AGCT	8 cut(s)	80, 293, 308, 371, 485, 668, 716, 869
AluI	AGCT	8 cut(s)	80, 293, 308, 371, 485, 668, 716, 869
Alw21I	GWGCWC	2 cut(s)	642, 718
Alw26I	GTCTC	2 cut(s)	809, 952
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	668
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	4 cut(s)	12, 54, 290, 371
ApoI	RAATTY	2 cut(s)	377, 765
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	433, 443
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BanI	GGYRCC	1 cut(s)	890
BanII	GRGCYC	1 cut(s)	718
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	2 cut(s)	642, 718
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	4 cut(s)	24, 66, 302, 358
BccI	CCATC	2 cut(s)	116, 755
BceAI	ACGGC	1 cut(s)	640
BcgI	CGANNNNNNTGC	2 cut(s)	884, 918
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	961
BclI	TGATCA	2 cut(s)	21, 352
BcoDI	GTCTC	2 cut(s)	809, 952
BfaI	CTAG	5 cut(s)	287, 525, 746, 951, 1054
BfmI	CTRYAG	1 cut(s)	444
BfoI	RGCGCY	2 cut(s)	434, 444
BfuAI	ACCTGC	1 cut(s)	795
BfuI	GTATCC	1 cut(s)	961
BisI	GCNGC	4 cut(s)	13, 55, 291, 372
BlsI	GCNGC	4 cut(s)	14, 56, 292, 373
Bme1390I	CCNGG	1 cut(s)	504
BmiI	GGNNCC	2 cut(s)	633, 892
BmrFI	CCNGG	1 cut(s)	504
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	2 cut(s)	739, 1018
BmuI	ACTGGG	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	705, 737
BpmI	CTGGAG	1 cut(s)	855
Bpu10I	CCTNAGC	2 cut(s)	636, 669
BpuEI	CTTGAG	1 cut(s)	949
BsaAI	YACGTR	1 cut(s)	569
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	132, 451, 803
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 156, 186
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse1I	ACTGG	4 cut(s)	32, 847, 872, 944
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	3 cut(s)	132, 451, 803
BseGI	GGATG	2 cut(s)	519, 1033
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	2 cut(s)	627, 660
BseNI	ACTGG	4 cut(s)	32, 847, 872, 944
BseRI	GAGGAG	4 cut(s)	19, 61, 61, 64
BseXI	GCAGC	4 cut(s)	24, 66, 302, 358
BshFI	GGCC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	890
BsiHKAI	GWGCWC	2 cut(s)	642, 718
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	2 cut(s)	809, 952
BsnI	GGCC	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	642, 718
Bsp143I	GATC	3 cut(s)	21, 352, 571
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	2 cut(s)	314, 345
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	628, 661
BspHI	TCATGA	1 cut(s)	862
BspLI	GGNNCC	2 cut(s)	633, 892
BspMI	ACCTGC	1 cut(s)	795
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	890
BsrI	ACTGG	4 cut(s)	32, 847, 872, 944
BssECI	CCNNGG	3 cut(s)	132, 451, 803
BssMI	GATC	3 cut(s)	21, 352, 571
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	3 cut(s)	132, 451, 803
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	410, 820, 1045
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	137
BstBAI	YACGTR	1 cut(s)	569
BstDEI	CTNAG	2 cut(s)	636, 669
BstDSI	CCRYGG	1 cut(s)	451
BstF5I	GGATG	2 cut(s)	519, 1033
BstH2I	RGCGCY	2 cut(s)	434, 444
BstHHI	GCGC	2 cut(s)	433, 443
BstKTI	GATC	3 cut(s)	24, 355, 574
BstMAI	GTCTC	2 cut(s)	809, 952
BstMBI	GATC	3 cut(s)	21, 352, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 1037
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	24, 66, 302, 358
BstV2I	GAAGAC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	961
BsuRI	GGCC	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	451
BtgZI	GCGATG	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	519, 1033
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	2 cut(s)	694, 825
BveI	ACCTGC	1 cut(s)	795
CaiI	CAGNNNCTG	1 cut(s)	668
CciI	TCATGA	1 cut(s)	862
CfoI	GCGC	2 cut(s)	433, 443
CseI	GACGC	1 cut(s)	126
Csp6I	GTAC	3 cut(s)	150, 198, 792
CviAII	CATG	5 cut(s)	452, 497, 649, 741, 863
CviQI	GTAC	3 cut(s)	150, 198, 792
DdeI	CTNAG	2 cut(s)	636, 669
DpnI	GATC	3 cut(s)	23, 354, 573
DpnII	GATC	3 cut(s)	21, 352, 571
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Ecl136II	GAGCTC	1 cut(s)	716
Eco130I	CCWWGG	3 cut(s)	132, 451, 803
Eco24I	GRGCYC	1 cut(s)	718
Eco53kI	GAGCTC	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	501
EcoICRI	GAGCTC	1 cut(s)	716
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	3 cut(s)	132, 451, 803
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	3 cut(s)	132, 451, 803
FaeI	CATG	5 cut(s)	455, 500, 652, 744, 866
FatI	CATG	5 cut(s)	451, 496, 648, 740, 862
FauI	CCCGC	1 cut(s)	352
FbaI	TGATCA	2 cut(s)	21, 352
Fnu4HI	GCNGC	4 cut(s)	13, 55, 291, 372
FokI	GGATG	2 cut(s)	506, 1040
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	4 cut(s)	13, 55, 291, 372
FspBI	CTAG	5 cut(s)	287, 525, 746, 951, 1054
GlaI	GCGC	2 cut(s)	432, 442
GluI	GCNGC	4 cut(s)	13, 55, 291, 372
GsuI	CTGGAG	1 cut(s)	855
HaeII	RGCGCY	2 cut(s)	434, 444
HaeIII	GGCC	1 cut(s)	450
HgaI	GACGC	1 cut(s)	126
HhaI	GCGC	2 cut(s)	433, 443
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	5 cut(s)	455, 500, 652, 744, 866
Hin6I	GCGC	2 cut(s)	431, 441
HinP1I	GCGC	2 cut(s)	431, 441
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	3 cut(s)	257, 458, 776
Hpy188I	TCNGA	5 cut(s)	76, 142, 357, 664, 798
Hpy188III	TCNNGA	7 cut(s)	479, 635, 746, 863, 928, 951, 965
Hpy8I	GTNNAC	3 cut(s)	257, 458, 776
HpyAV	CCTTC	3 cut(s)	840, 985, 1006
HpyCH4III	ACNGT	3 cut(s)	410, 820, 1045
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	3 cut(s)	329, 374, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 1037
HpyF3I	CTNAG	2 cut(s)	636, 669
HpySE526I	ACGT	1 cut(s)	568
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	5 cut(s)	455, 500, 652, 744, 866
HspAI	GCGC	2 cut(s)	431, 441
Ksp22I	TGATCA	2 cut(s)	21, 352
Kzo9I	GATC	3 cut(s)	21, 352, 571
LmnI	GCTCC	4 cut(s)	51, 505, 713, 874
Lsp1109I	GCAGC	4 cut(s)	24, 66, 302, 358
LweI	GCATC	2 cut(s)	739, 1018
MaeI	CTAG	5 cut(s)	287, 525, 746, 951, 1054
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	3 cut(s)	299, 689, 874
MalI	GATC	3 cut(s)	23, 354, 573
MboI	GATC	3 cut(s)	21, 352, 571
MboII	GAAGA	4 cut(s)	179, 181, 638, 1024
MfeI	CAATTG	1 cut(s)	909
MhlI	GDGCHC	2 cut(s)	642, 718
MluCI	AATT	9 cut(s)	58, 264, 323, 377, 401, 765, 909, 1032, 1048
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	3 cut(s)	405, 419, 1035
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	447, 1037
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	3 cut(s)	21, 352, 571
NlaIII	CATG	5 cut(s)	455, 500, 652, 744, 866
NlaIV	GGNNCC	2 cut(s)	633, 892
NmuCI	GTSAC	1 cut(s)	689
NspI	RCATGY	1 cut(s)	744
PagI	TCATGA	1 cut(s)	862
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	14, 56, 292, 373
Ppu21I	YACGTR	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	633, 892
PsrI	GAACNNNNNNTAC	2 cut(s)	615, 647
PstNI	CAGNNNCTG	1 cut(s)	668
RsaI	GTAC	3 cut(s)	151, 199, 793
RsaNI	GTAC	3 cut(s)	150, 198, 792
SacI	GAGCTC	1 cut(s)	718
SaqAI	TTAA	3 cut(s)	405, 419, 1035
SatI	GCNGC	4 cut(s)	13, 55, 291, 372
Sau3AI	GATC	3 cut(s)	21, 352, 571
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	2 cut(s)	642, 718
SfaNI	GCATC	2 cut(s)	739, 1018
SfcI	CTRYAG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
Sse9I	AATT	9 cut(s)	58, 264, 323, 377, 401, 765, 909, 1032, 1048
SsiI	CCGC	2 cut(s)	314, 345
SspMI	CTAG	5 cut(s)	287, 525, 746, 951, 1054
SstI	GAGCTC	1 cut(s)	718
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	3 cut(s)	132, 451, 803
TaaI	ACNGT	3 cut(s)	410, 820, 1045
TaiI	ACGT	1 cut(s)	571
TasI	AATT	9 cut(s)	58, 264, 323, 377, 401, 765, 909, 1032, 1048
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	3 cut(s)	405, 419, 1035
Tru9I	TTAA	3 cut(s)	405, 419, 1035
TscAI	CASTG	2 cut(s)	694, 825
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	4 cut(s)	12, 54, 290, 371
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	3 cut(s)	381, 637, 879
TspGWI	ACGGA	1 cut(s)	182
TspRI	CASTG	2 cut(s)	694, 825
XapI	RAATTY	2 cut(s)	377, 765
XbaI	TCTAGA	2 cut(s)	745, 950
XceI	RCATGY	1 cut(s)	744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	5 cut(s)	287, 525, 746, 951, 1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.