Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Forward (+)

89550182 .. 89553231

Gene Structure 3050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG565700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGCGCAGCAGTGTAATGAGCAGGAGCAGATTGATGAACTGGGCCTCTCATACGAGGAGGAGCAGAAGCCACCAGTACCAGCAGCAGGCATTCTCAACCTCCTCCGAAACTGGAAAATCACTCAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCACGTACTTATGTATTTGGAGAAGATGTGGGCTTCGGTGGGGTCTTCCGTTGTACCACAGGCTTGGCTGATCGCTTTGGTAAAAAAAGGGTTTTCAATACCCCTCTTTGTGAACAGGGCATTGTAGGATTTGGTATTGGTCTTGCAGCTATGGGCAATCGAGCTGTTGCAGAAATCCAATTTGCAGATTATATTTTTCCCGCTTTTGATCAGATTGTCAATGAAGCTGCCAAATTCAGATACCGTAGTGGGAACCAATTTAACTGTGGAGGCTTAACCATAAGAGCGCCCTATGGAGCTGTAGGCCACGGTGGACATTACCACTCACAATCTCCTGAAGCTTTTTTCTGTCATGTTCCTGGTATCAAAGTGGTCATTCCTAGAAGCCCACGACAAGCAAAAGGCTTATTGCTTTCCTGTATACGCGATCCAAACCCTGTTGTGTTTTTTGAACCAAAGTGGTTATACAGATTATCAGTAGAAGAGGTTCCTGAGCATGATTTCATGTTGCCGTTATCAGAGGCCGAGGTAATACGAGAGGGCAATGATATAACACTTGTTGGGTGGGGAGCTCAACTATCTGTAATGGAACAGGCCTGTCTAGATGCTGAAAAGGATGGAATTTCATGTGAACTGATAGACCTGCGTACTCTGATACCTTGGGATAAGGACACAGTAGAGGCTTCTGTCAAAAAGACTGGAAGGCTTCTTATTAGTCATGAAGCTCCAGTTACCGGAGGATTTGGTGCCGAAATAGCAGCTTCAATTGTTGAAAGTTGCTTCTTGAGGTTAGAAGCACCAGTCTCAAGAGTATGTGGTCTGGATACCCCCTTCCCTCTTGTGTTTGAACCTTTCTATATGCCCACAAAGAACAAGATATTGGACGCAATTAAAACAACTGTAAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

362

Amino Acids

40.02

Weight (kDa)

6.76

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	43 - 216	2.8e-38	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	233 - 352	1e-36	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	828
AccB1I	GGYRCC	1 cut(s)	923
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	1 cut(s)	603
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	2 cut(s)	170, 599
AcsI	RAATTY	2 cut(s)	410, 798
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	4 cut(s)	80, 184, 232, 826
AfeI	AGCGCT	1 cut(s)	153
AfiI	CCNNNNNNNGG	2 cut(s)	88, 911
AgsI	TTSAA	5 cut(s)	274, 629, 942, 950, 1025
AjnI	CCWGG	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	1040, 1072
AluBI	AGCT	8 cut(s)	326, 341, 404, 476, 518, 749, 902, 938
AluI	AGCT	8 cut(s)	326, 341, 404, 476, 518, 749, 902, 938
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	985
AlwI	GGATC	2 cut(s)	170, 599
Aor51HI	AGCGCT	1 cut(s)	153
AoxI	GGCC	4 cut(s)	45, 481, 699, 771
ApeKI	GCWGC	5 cut(s)	9, 85, 323, 404, 935
ApoI	RAATTY	2 cut(s)	410, 798
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	3 cut(s)	9, 154, 466
AspS9I	GGNCC	1 cut(s)	45
BaeI	ACNNNNGTAYC	2 cut(s)	409, 442
BanI	GGYRCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	751
BbsI	GAAGAC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	5 cut(s)	21, 97, 335, 391, 947
BccI	CCATC	2 cut(s)	149, 788
BceAI	ACGGC	1 cut(s)	673
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	994
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	1 cut(s)	985
BfaI	CTAG	3 cut(s)	558, 779, 1087
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	2 cut(s)	155, 467
BfuAI	ACCTGC	1 cut(s)	828
BfuI	GTATCC	1 cut(s)	994
BisI	GCNGC	5 cut(s)	10, 86, 324, 405, 936
BlsI	GCNGC	5 cut(s)	11, 87, 325, 406, 937
Bme1390I	CCNGG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	3 cut(s)	431, 666, 925
BmrFI	CCNGG	1 cut(s)	537
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	772
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	888
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	967, 982
BsaAI	YACGTR	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	165, 484, 702, 836
BsaWI	WCCGGW	1 cut(s)	911
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 911
Bse1I	ACTGG	6 cut(s)	47, 76, 118, 880, 905, 977
Bse3DI	GCAATG	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	4 cut(s)	165, 484, 702, 836
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	2 cut(s)	88, 911
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	6 cut(s)	47, 76, 118, 880, 905, 977
BseRI	GAGGAG	3 cut(s)	73, 76, 94
BseXI	GCAGC	5 cut(s)	21, 97, 335, 391, 947
Bsh1236I	CGCG	1 cut(s)	603
BshFI	GGCC	4 cut(s)	47, 483, 701, 773
BshNI	GGYRCC	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	1 cut(s)	912
BslI	CCNNNNNNNGG	2 cut(s)	88, 911
BsmAI	GTCTC	1 cut(s)	985
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	47, 483, 701, 773
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	4 cut(s)	175, 247, 385, 604
BspACI	CCGC	1 cut(s)	378
BspANI	GGCC	4 cut(s)	47, 483, 701, 773
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	3 cut(s)	431, 666, 925
BspMI	ACCTGC	1 cut(s)	828
BspPI	GGATC	2 cut(s)	170, 599
BspT107I	GGYRCC	1 cut(s)	923
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	6 cut(s)	47, 76, 118, 880, 905, 977
BssECI	CCNNGG	4 cut(s)	165, 484, 702, 836
BssMI	GATC	4 cut(s)	175, 247, 385, 604
BssNAI	GTATAC	1 cut(s)	599
BssT1I	CCWWGG	2 cut(s)	165, 836
Bst1107I	GTATAC	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	5 cut(s)	422, 443, 488, 853, 1078
Bst6I	CTCTTC	1 cut(s)	654
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	669
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	1 cut(s)	799
BstFNI	CGCG	1 cut(s)	603
BstH2I	RGCGCY	2 cut(s)	155, 467
BstHHI	GCGC	3 cut(s)	9, 154, 466
BstKTI	GATC	4 cut(s)	178, 250, 388, 607
BstMAI	GTCTC	1 cut(s)	985
BstMBI	GATC	4 cut(s)	175, 247, 385, 604
BstMWI	GCNNNNNNNGC	1 cut(s)	932
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	5 cut(s)	21, 97, 335, 391, 947
BstV2I	GAAGAC	1 cut(s)	214
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstZ17I	GTATAC	1 cut(s)	599
BsuI	GTATCC	1 cut(s)	994
BsuRI	GGCC	4 cut(s)	47, 483, 701, 773
BtgI	CCRYGG	1 cut(s)	484
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	799
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	828
Cac8I	GCNNGC	1 cut(s)	90
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	3 cut(s)	9, 154, 466
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	1 cut(s)	1070
Csp6I	GTAC	4 cut(s)	79, 183, 231, 825
CviAII	CATG	5 cut(s)	530, 674, 682, 804, 896
CviQI	GTAC	4 cut(s)	79, 183, 231, 825
DdeI	CTNAG	1 cut(s)	669
DpnI	GATC	4 cut(s)	177, 249, 387, 606
DpnII	GATC	4 cut(s)	175, 247, 385, 604
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Ecl136II	GAGCTC	1 cut(s)	749
Eco130I	CCWWGG	2 cut(s)	165, 836
Eco147I	AGGCCT	1 cut(s)	773
Eco24I	GRGCYC	1 cut(s)	751
Eco47III	AGCGCT	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	2 cut(s)	165, 836
EcoT38I	GRGCYC	1 cut(s)	751
ErhI	CCWWGG	2 cut(s)	165, 836
FaeI	CATG	5 cut(s)	533, 677, 685, 807, 899
FatI	CATG	5 cut(s)	529, 673, 681, 803, 895
FauI	CCCGC	1 cut(s)	385
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	10, 86, 324, 405, 936
FokI	GGATG	1 cut(s)	806
FriOI	GRGCYC	1 cut(s)	751
Fsp4HI	GCNGC	5 cut(s)	10, 86, 324, 405, 936
FspBI	CTAG	3 cut(s)	558, 779, 1087
GlaI	GCGC	3 cut(s)	8, 153, 465
GluI	GCNGC	5 cut(s)	10, 86, 324, 405, 936
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	2 cut(s)	155, 467
HaeIII	GGCC	4 cut(s)	47, 483, 701, 773
HapII	CCGG	1 cut(s)	912
HgaI	GACGC	1 cut(s)	1070
HhaI	GCGC	3 cut(s)	9, 154, 466
Hin1II	CATG	5 cut(s)	533, 677, 685, 807, 899
Hin6I	GCGC	3 cut(s)	7, 152, 464
HinP1I	GCGC	3 cut(s)	7, 152, 464
HindIII	AAGCTT	1 cut(s)	516
HpaII	CCGG	1 cut(s)	912
Hpy166II	GTNNAC	5 cut(s)	290, 491, 599, 809, 1081
Hpy188I	TCNGA	5 cut(s)	109, 390, 416, 697, 831
Hpy188III	TCNNGA	7 cut(s)	512, 668, 779, 896, 961, 984, 998
Hpy8I	GTNNAC	5 cut(s)	290, 491, 599, 809, 1081
HpyAV	CCTTC	2 cut(s)	873, 1018
HpyCH4III	ACNGT	5 cut(s)	422, 443, 488, 853, 1078
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	3 cut(s)	323, 347, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	932
HpyF3I	CTNAG	1 cut(s)	669
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	5 cut(s)	533, 677, 685, 807, 899
HspAI	GCGC	3 cut(s)	7, 152, 464
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	175, 247, 385, 604
LmnI	GCTCC	6 cut(s)	27, 63, 159, 473, 746, 907
Lsp1109I	GCAGC	5 cut(s)	21, 97, 335, 391, 947
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	3 cut(s)	558, 779, 1087
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	4 cut(s)	177, 249, 387, 606
MboI	GATC	4 cut(s)	175, 247, 385, 604
MboII	GAAGA	3 cut(s)	212, 214, 671
MfeI	CAATTG	1 cut(s)	942
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	6 cut(s)	356, 410, 434, 798, 942, 1065
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	3 cut(s)	438, 452, 1068
MspI	CCGG	1 cut(s)	912
MspR9I	CCNGG	1 cut(s)	537
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	1 cut(s)	603
MwoI	GCNNNNNNNGC	1 cut(s)	932
NdeII	GATC	4 cut(s)	175, 247, 385, 604
NlaIII	CATG	5 cut(s)	533, 677, 685, 807, 899
NlaIV	GGNNCC	3 cut(s)	431, 666, 925
NmeAIII	GCCGAG	1 cut(s)	727
PagI	TCATGA	1 cut(s)	895
PceI	AGGCCT	1 cut(s)	773
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	663
PkrI	GCNGC	5 cut(s)	11, 87, 325, 406, 937
Ppu21I	YACGTR	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	751
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	3 cut(s)	431, 666, 925
PspPI	GGNCC	1 cut(s)	45
PsrI	GAACNNNNNNTAC	2 cut(s)	648, 680
RsaI	GTAC	4 cut(s)	80, 184, 232, 826
RsaNI	GTAC	4 cut(s)	79, 183, 231, 825
SacI	GAGCTC	1 cut(s)	751
SaqAI	TTAA	3 cut(s)	438, 452, 1068
SatI	GCNGC	5 cut(s)	10, 86, 324, 405, 936
Sau3AI	GATC	4 cut(s)	175, 247, 385, 604
Sau96I	GGNCC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	751
SfaNI	GCATC	1 cut(s)	772
SfcI	CTRYAG	1 cut(s)	477
SmlI	CTYRAG	2 cut(s)	961, 982
SmoI	CTYRAG	2 cut(s)	961, 982
Sse9I	AATT	6 cut(s)	356, 410, 434, 798, 942, 1065
SseBI	AGGCCT	1 cut(s)	773
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	3 cut(s)	558, 779, 1087
SstI	GAGCTC	1 cut(s)	751
StuI	AGGCCT	1 cut(s)	773
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	2 cut(s)	165, 836
TaaI	ACNGT	5 cut(s)	422, 443, 488, 853, 1078
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	337
TasI	AATT	6 cut(s)	356, 410, 434, 798, 942, 1065
Tru1I	TTAA	3 cut(s)	438, 452, 1068
Tru9I	TTAA	3 cut(s)	438, 452, 1068
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	5 cut(s)	9, 85, 323, 404, 935
TspDTI	ATGAA	5 cut(s)	53, 414, 670, 792, 912
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	2 cut(s)	410, 798
XbaI	TCTAGA	1 cut(s)	778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	3 cut(s)	558, 779, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.