Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Reverse (-)

151075 .. 154167

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1002200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGGCTGTGCAGATTTGGAAGATTGGTTAAAGGGGTCGGAGTTGGAAGGAGGAGGCCATTTGCAACCTCCTCTTCTGCCGCCGGTGGTGATGAAATGATTGTTCGTGGCACTGGCAGCAAGTCGTTGAACCTCTACTCTGCCATCAACCAAGCGCTCCATATCGCCTTGGAAACTGATCCACGTTCTTATGTATTTGGAGAAGATGTGAGCTTTGGTGGGGTCTTCCGTTGCACAACAGGCTTAGCTGATCGCTTCGGTAAACAAAGGGTTTTTAATACCCCTCTTTGTGAACAGGGCATTGTAGGATTCGGCATTGGTCTAGCAGCTATGGGTAATCGAGCTGTAGCAGAAATCCAATTCGCAGATTATATTTTTCCAGCTTTTGATCAGATTGTCAATGAAGCTGCAAAGTTCCGATATAGAAGTGGAAATCAATTTAATTGTGGAGGTTTAACAATTAGAGCCCCCTATGGAGCTGTTGGCCACGGTGGACATTATCACTCACAGTCTCCTGAAGCTTTCTTCTGTCATGTCCCTGGTCTCAAAGTGGTCATCCCTCGAAGCCCACTGCAAGCAAAAGGCTTATTGCTGTCGTGCATACGTGATCCGAATCCTGTTGTGTTCTTCGAACCAAAGTGGTTATACAGATTATCAGTAGAAGAGGTTCCTGAGCATGATTACATGTTGCCTTTATCGGAGGCAGAGGTAATTCGAGAGGGCACCGATATAACACTTGTTGGTTGGGGAGCCCAATTATCTGTAATGGAACAGGCCTGTAAAGAAGCTGAGAGTGATGGAATTTCTTGTGAACTGATAGACCTGCGAACTCTTTTACCTTGGGACAAGGACACAGTGGAGGCCTCAGTCAGAAAGACGGGAAGGCTTCTTATAAGTCATGAAGCGCCAGTTACTGGAGGATTTGGTGCTGAAATATCCGCTTCAATTGTTGAACGCTGCTTCCTAAGGTTAGAAGCGCCTGTTGCAAGAGTATGTGGTTTGGATACCCCCTTCCCTCTCGTCTTCGAGCCCTTCTACATGCCCACCAAAAACAAGATATTGGATGCAATCAAATCAACTGTAAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

364

Amino Acids

39.63

Weight (kDa)

6.41

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	44 - 217	2.3e-37	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	234 - 353	3.9e-37	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	893
Acc36I	ACCTGC	1 cut(s)	831
AccB1I	GGYRCC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	914
AciI	CCGC	2 cut(s)	81, 939
AclWI	GGATC	2 cut(s)	173, 602
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	2 cut(s)	801, 1084
AcuI	CTGAAG	1 cut(s)	537
AfeI	AGCGCT	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	914
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	3 cut(s)	130, 945, 953
AjnI	CCWGG	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	945, 977
AluBI	AGCT	9 cut(s)	213, 248, 329, 344, 383, 407, 479, 521, 788
AluI	AGCT	9 cut(s)	213, 248, 329, 344, 383, 407, 479, 521, 788
Alw26I	GTCTC	2 cut(s)	516, 548
AlwI	GGATC	2 cut(s)	173, 602
AlwNI	CAGNNNCTG	1 cut(s)	914
Aor51HI	AGCGCT	1 cut(s)	156
AoxI	GGCC	4 cut(s)	56, 484, 774, 861
ApeKI	GCWGC	4 cut(s)	117, 326, 407, 957
ApoI	RAATTY	2 cut(s)	801, 1084
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	3 cut(s)	157, 907, 979
AsuHPI	GGTGA	1 cut(s)	101
AsuII	TTCGAA	1 cut(s)	630
AxyI	CCTNAGG	1 cut(s)	965
BaeGI	GKGCMC	1 cut(s)	725
BalI	TGGCCA	1 cut(s)	486
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	3 cut(s)	469, 754, 1032
BbsI	GAAGAC	2 cut(s)	217, 1015
BbvI	GCAGC	4 cut(s)	129, 338, 394, 944
BccI	CCATC	2 cut(s)	152, 791
BciT130I	CCWGG	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	997
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	516, 548
BfaI	CTAG	2 cut(s)	323, 1090
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	3 cut(s)	158, 908, 980
BfuAI	ACCTGC	1 cut(s)	831
BfuI	GTATCC	1 cut(s)	997
BisI	GCNGC	5 cut(s)	81, 118, 327, 408, 958
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	5 cut(s)	82, 119, 328, 409, 959
Bme1390I	CCNGG	1 cut(s)	540
BmiI	GGNNCC	3 cut(s)	669, 724, 751
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	1 cut(s)	1054
BpiI	GAAGAC	2 cut(s)	217, 1015
BpmI	CTGGAG	1 cut(s)	936
Bpu10I	CCTNAGC	1 cut(s)	672
Bpu1102I	GCTNAGC	1 cut(s)	244
Bpu14I	TTCGAA	1 cut(s)	630
BsaAI	YACGTR	1 cut(s)	605
BsaBI	GATNNNNATC	1 cut(s)	612
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	168, 487, 538, 839
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	914
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	3 cut(s)	118, 908, 919
Bse21I	CCTNAGG	1 cut(s)	965
Bse8I	GATNNNNATC	1 cut(s)	612
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	4 cut(s)	168, 487, 538, 839
BseGI	GGATG	2 cut(s)	555, 1069
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	1 cut(s)	914
BseMII	CTCAG	3 cut(s)	663, 780, 879
BseNI	ACTGG	3 cut(s)	118, 908, 919
BseRI	GAGGAG	2 cut(s)	61, 67
BseSI	GKGCMC	1 cut(s)	725
BseXI	GCAGC	4 cut(s)	129, 338, 394, 944
BsgI	GTGCAG	1 cut(s)	31
BshFI	GGCC	4 cut(s)	58, 486, 776, 863
BshNI	GGYRCC	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	521, 857
BslI	CCNNNNNNNGG	1 cut(s)	914
BsmAI	GTCTC	2 cut(s)	516, 548
BsmFI	GGGAC	2 cut(s)	521, 857
BsnI	GGCC	4 cut(s)	58, 486, 776, 863
Bso31I	GGTCTC	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	630
Bsp1286I	GDGCHC	4 cut(s)	469, 725, 754, 1032
Bsp143I	GATC	4 cut(s)	178, 250, 388, 607
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	81, 939
BspANI	GGCC	4 cut(s)	58, 486, 776, 863
BspCNI	CTCAG	3 cut(s)	664, 781, 878
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	3 cut(s)	669, 724, 751
BspMI	ACCTGC	1 cut(s)	831
BspPI	GGATC	2 cut(s)	173, 602
BspT104I	TTCGAA	1 cut(s)	630
BspT107I	GGYRCC	1 cut(s)	722
BspTNI	GGTCTC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	118, 908, 919
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	4 cut(s)	168, 487, 538, 839
BssMI	GATC	4 cut(s)	178, 250, 388, 607
BssT1I	CCWWGG	2 cut(s)	168, 839
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	4 cut(s)	491, 510, 856, 1081
Bst6I	CTCTTC	2 cut(s)	79, 657
BstBAI	YACGTR	1 cut(s)	605
BstBI	TTCGAA	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	5 cut(s)	244, 672, 789, 865, 965
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	2 cut(s)	555, 1069
BstH2I	RGCGCY	3 cut(s)	158, 908, 980
BstHHI	GCGC	3 cut(s)	157, 907, 979
BstKTI	GATC	4 cut(s)	181, 253, 391, 610
BstMAI	GTCTC	2 cut(s)	516, 548
BstMBI	GATC	4 cut(s)	178, 250, 388, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 240, 983
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	2 cut(s)	688, 1042
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	725
BstV1I	GCAGC	4 cut(s)	129, 338, 394, 944
BstV2I	GAAGAC	2 cut(s)	217, 1015
Bsu36I	CCTNAGG	1 cut(s)	965
BsuI	GTATCC	1 cut(s)	997
BsuRI	GGCC	4 cut(s)	58, 486, 776, 863
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	555, 1069
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	3 cut(s)	111, 569, 861
BveI	ACCTGC	1 cut(s)	831
Cac8I	GCNNGC	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	914
CciI	TCATGA	1 cut(s)	898
CfoI	GCGC	3 cut(s)	157, 907, 979
Cfr10I	RCCGGY	1 cut(s)	83
CviAII	CATG	5 cut(s)	533, 677, 685, 899, 1039
DdeI	CTNAG	5 cut(s)	244, 672, 789, 865, 965
DpnI	GATC	4 cut(s)	180, 252, 390, 609
DpnII	GATC	4 cut(s)	178, 250, 388, 607
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	79, 657
EarI	CTCTTC	2 cut(s)	79, 657
Eco130I	CCWWGG	2 cut(s)	168, 839
Eco147I	AGGCCT	2 cut(s)	776, 863
Eco24I	GRGCYC	3 cut(s)	469, 754, 1032
Eco31I	GGTCTC	1 cut(s)	548
Eco47III	AGCGCT	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	537
Eco81I	CCTNAGG	1 cut(s)	965
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	168, 839
EcoT38I	GRGCYC	3 cut(s)	469, 754, 1032
ErhI	CCWWGG	2 cut(s)	168, 839
FaeI	CATG	5 cut(s)	536, 680, 688, 902, 1042
FaqI	GGGAC	2 cut(s)	521, 857
FatI	CATG	5 cut(s)	532, 676, 684, 898, 1038
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	5 cut(s)	81, 118, 327, 408, 958
FokI	GGATG	2 cut(s)	542, 1076
FriOI	GRGCYC	3 cut(s)	469, 754, 1032
Fsp4HI	GCNGC	5 cut(s)	81, 118, 327, 408, 958
FspBI	CTAG	2 cut(s)	323, 1090
GlaI	GCGC	3 cut(s)	156, 906, 978
GluI	GCNGC	5 cut(s)	81, 118, 327, 408, 958
GsuI	CTGGAG	1 cut(s)	936
HaeII	RGCGCY	3 cut(s)	158, 908, 980
HaeIII	GGCC	4 cut(s)	58, 486, 776, 863
HapII	CCGG	1 cut(s)	84
HhaI	GCGC	3 cut(s)	157, 907, 979
Hin1II	CATG	5 cut(s)	536, 680, 688, 902, 1042
Hin6I	GCGC	3 cut(s)	155, 905, 977
HinP1I	GCGC	3 cut(s)	155, 905, 977
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	2 cut(s)	309, 613
HpaII	CCGG	1 cut(s)	84
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	4 cut(s)	263, 293, 494, 812
Hpy188I	TCNGA	6 cut(s)	41, 393, 419, 612, 700, 872
Hpy188III	TCNNGA	4 cut(s)	515, 671, 716, 899
Hpy8I	GTNNAC	4 cut(s)	263, 293, 494, 812
HpyAV	CCTTC	4 cut(s)	42, 876, 1021, 1042
HpyCH4III	ACNGT	4 cut(s)	491, 510, 856, 1081
HpyCH4IV	ACGT	2 cut(s)	184, 604
HpyCH4V	TGCA	8 cut(s)	12, 65, 234, 410, 574, 600, 986, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 240, 983
HpyF3I	CTNAG	5 cut(s)	244, 672, 789, 865, 965
HpySE526I	ACGT	2 cut(s)	184, 604
Hsp92II	CATG	5 cut(s)	536, 680, 688, 902, 1042
HspAI	GCGC	3 cut(s)	155, 905, 977
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	178, 250, 388, 607
LmnI	GCTCC	3 cut(s)	162, 476, 749
Lsp1109I	GCAGC	4 cut(s)	129, 338, 394, 944
LweI	GCATC	1 cut(s)	1054
MaeI	CTAG	2 cut(s)	323, 1090
MaeII	ACGT	2 cut(s)	184, 604
MaeIII	GTNAC	1 cut(s)	910
MalI	GATC	4 cut(s)	180, 252, 390, 609
MboI	GATC	4 cut(s)	178, 250, 388, 607
MboII	GAAGA	8 cut(s)	33, 66, 215, 217, 517, 619, 674, 1015
MfeI	CAATTG	1 cut(s)	945
MhlI	GDGCHC	4 cut(s)	469, 725, 754, 1032
MlsI	TGGCCA	1 cut(s)	486
MluCI	AATT	9 cut(s)	359, 437, 442, 459, 711, 755, 801, 945, 1084
MluNI	TGGCCA	1 cut(s)	486
MmeI	TCCRAC	2 cut(s)	19, 25
Mox20I	TGGCCA	1 cut(s)	486
MroXI	GAANNNNTTC	1 cut(s)	666
MscI	TGGCCA	1 cut(s)	486
MseI	TTAA	4 cut(s)	30, 276, 441, 455
Msp20I	TGGCCA	1 cut(s)	486
MspI	CCGG	1 cut(s)	84
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	945
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	3 cut(s)	117, 240, 983
NdeII	GATC	4 cut(s)	178, 250, 388, 607
NlaIII	CATG	5 cut(s)	536, 680, 688, 902, 1042
NlaIV	GGNNCC	3 cut(s)	669, 724, 751
NspI	RCATGY	2 cut(s)	688, 1042
NspV	TTCGAA	1 cut(s)	630
PagI	TCATGA	1 cut(s)	898
PceI	AGGCCT	2 cut(s)	776, 863
PciI	ACATGT	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	309, 613
PflMI	CCANNNNNTGG	1 cut(s)	914
PkrI	GCNGC	5 cut(s)	82, 119, 328, 409, 959
Ppu21I	YACGTR	1 cut(s)	605
PscI	ACATGT	1 cut(s)	684
PsiI	TTATAA	1 cut(s)	893
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	3 cut(s)	669, 724, 751
PsrI	GAACNNNNNNTAC	2 cut(s)	651, 683
PstNI	CAGNNNCTG	1 cut(s)	914
SaqAI	TTAA	4 cut(s)	30, 276, 441, 455
SatI	GCNGC	5 cut(s)	81, 118, 327, 408, 958
Sau3AI	GATC	4 cut(s)	178, 250, 388, 607
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	4 cut(s)	469, 725, 754, 1032
SfaNI	GCATC	1 cut(s)	1054
SfcI	CTRYAG	1 cut(s)	345
SfuI	TTCGAA	1 cut(s)	630
SgrAI	CRCCGGYG	1 cut(s)	83
Sse9I	AATT	9 cut(s)	359, 437, 442, 459, 711, 755, 801, 945, 1084
SseBI	AGGCCT	2 cut(s)	776, 863
SsiI	CCGC	2 cut(s)	81, 939
SspMI	CTAG	2 cut(s)	323, 1090
StuI	AGGCCT	2 cut(s)	776, 863
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	2 cut(s)	168, 839
TaaI	ACNGT	4 cut(s)	491, 510, 856, 1081
TaiI	ACGT	2 cut(s)	187, 607
TaqI	TCGA	5 cut(s)	340, 562, 630, 715, 1026
TasI	AATT	9 cut(s)	359, 437, 442, 459, 711, 755, 801, 945, 1084
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	309, 613
Tru1I	TTAA	4 cut(s)	30, 276, 441, 455
Tru9I	TTAA	4 cut(s)	30, 276, 441, 455
TscAI	CASTG	3 cut(s)	118, 576, 861
TseI	GCWGC	4 cut(s)	117, 326, 407, 957
TspDTI	ATGAA	3 cut(s)	108, 417, 915
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	3 cut(s)	118, 576, 861
Van91I	CCANNNNNTGG	1 cut(s)	914
XapI	RAATTY	2 cut(s)	801, 1084
XceI	RCATGY	2 cut(s)	688, 1042
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	2 cut(s)	323, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.