Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Reverse (-)

273296 .. 278112

Gene Structure 4817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G002000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGCCTGAGGAGGTTTGGAAGATTGGTCAAATGGGTTGGTGGTAATGGTAGGAGGCCATTTTCAACCTCCTCCTCCTCCTCCTGTGATGAAATGATGGTCCAGCAAATTGCGAGTGGGAAATCATTGAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCACGTGCTTATGTATTTGGAGAAGATGTGAGCTTTGGTGGGGTCTTTCGTTGCACAACAGGCTTAGCTGATCGATTTGGTAAACAAAGGGTTTTTAATACCCCTCTCTGTGAACAGGGCATTGTAGGATTTGGCATTGGTCTAGCAGCTATGGGTAATCGAGCTGTAGCAGAAATCCAGTTCGCAGATTATATTTTTCCTGCTTTTGATCAGATTGTCAATGAAGCTGCAAAGTTCAGATACCGAAGTGGAAATCAATTTAATTGTGGAGGTTTAACAATACGATCCCCCTATGGAGCTGTGGGCCATGGTGGACATTATCATTCACAATCTCCGGAAGCTTTCTTCTGTCACGCCCCTGGTATCAAAGTGGTCATCCCTCGAAGCCCACGGCAAGCAAAAGGCTTATTGCTTTCCTGCATACGCGATCCAAACCCTGTTGTGTTTTTTGAACCAAAGTGGCTATACAGATTATCAGTAGAAGAGGTTCCTGAGCATGATTACATGTTGCCTTTATCAGAGGCTGAGGAATTCATACTTGAAAATTGGAACTGCGGTACTCAGATAATTCGAGAGGGCAACGATATAACACTTGTTGGTTGGGGAGCTCAGTTATCTATAATGGAACATGCCTGTAAGGATGCTGAAAAAGAAGGAATTTCTTGTGAACTGATAGACCTGCAAACTCTTTTACCTTGGGATAAGGACACAGTGGAGGCCTCTGTCAGAAAGACTGGAAGGCTTCTTATTAGTCATGAAGCTCCGGTTACTGGAGGATTCGGTGCTGAAATATCTGCCTCAATTGTCGAACGTTGCTTCCTAAGGTTGGAAGCACCTGTTGCGAGAGTGTGTGGTCTGGATACCCCATTTCCTCTTGTATTTGAGCCCTTCTATATGCCCAACAAGAACAAGATATTGGATGCAATCAAATCAACTGTAAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

376

Amino Acids

41.45

Weight (kDa)

6.1

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	867
AccII	CGCG	1 cut(s)	606
AccIII	TCCGGA	1 cut(s)	514
AciI	CCGC	1 cut(s)	735
AclI	AACGTT	1 cut(s)	991
AclWI	GGATC	3 cut(s)	173, 459, 602
AcsI	RAATTY	2 cut(s)	710, 837
AcvI	CACGTG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	739
AfeI	AGCGCT	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	950, 1006
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	4 cut(s)	66, 130, 632, 722
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	1079, 1111
AloI	GAACNNNNNNTCC	2 cut(s)	981, 1013
AluBI	AGCT	9 cut(s)	213, 248, 329, 344, 407, 479, 521, 788, 941
AluI	AGCT	9 cut(s)	213, 248, 329, 344, 407, 479, 521, 788, 941
Alw21I	GWGCWC	1 cut(s)	790
AlwI	GGATC	3 cut(s)	173, 459, 602
AlwNI	CAGNNNCTG	1 cut(s)	704
Aor13HI	TCCGGA	1 cut(s)	514
Aor51HI	AGCGCT	1 cut(s)	156
AoxI	GGCC	4 cut(s)	4, 56, 484, 897
ApeKI	GCWGC	2 cut(s)	326, 407
ApoI	RAATTY	2 cut(s)	710, 837
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	4, 100, 484
AvaII	GGWCC	1 cut(s)	100
AxyI	CCTNAGG	2 cut(s)	8, 1001
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BanII	GRGCYC	2 cut(s)	790, 1068
BbrPI	CACGTG	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	790
BbvCI	CCTCAGC	1 cut(s)	705
BbvI	GCAGC	2 cut(s)	338, 394
BccI	CCATC	2 cut(s)	91, 152
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	1033
BclI	TGATCA	1 cut(s)	388
BfaI	CTAG	2 cut(s)	323, 1126
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	867
BfuI	GTATCC	1 cut(s)	1033
BisI	GCNGC	2 cut(s)	327, 408
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	2 cut(s)	328, 409
Bme1390I	CCNGG	1 cut(s)	540
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	3 cut(s)	4, 100, 484
BmiI	GGNNCC	1 cut(s)	669
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	2 cut(s)	811, 1090
BpmI	CTGGAG	1 cut(s)	972
Bpu10I	CCTNAGC	2 cut(s)	672, 705
Bpu1102I	GCTNAGC	1 cut(s)	244
Bsa29I	ATCGAT	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	185
BsaJI	CCNNGG	5 cut(s)	168, 487, 538, 569, 875
BsaWI	WCCGGW	2 cut(s)	514, 943
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	950, 1006
Bse1I	ACTGG	3 cut(s)	358, 919, 955
Bse21I	CCTNAGG	2 cut(s)	8, 1001
BseAI	TCCGGA	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	540
BseCI	ATCGAT	1 cut(s)	253
BseDI	CCNNGG	5 cut(s)	168, 487, 538, 569, 875
BseGI	GGATG	3 cut(s)	555, 826, 1105
BseLI	CCNNNNNNNGG	2 cut(s)	950, 1006
BseMII	CTCAG	4 cut(s)	663, 696, 755, 803
BseNI	ACTGG	3 cut(s)	358, 919, 955
BseRI	GAGGAG	5 cut(s)	25, 61, 64, 67, 70
BseXI	GCAGC	2 cut(s)	338, 394
Bsh1236I	CGCG	1 cut(s)	606
BshFI	GGCC	4 cut(s)	6, 58, 486, 899
BshVI	ATCGAT	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	790
BsiSI	CCGG	2 cut(s)	515, 944
BslI	CCNNNNNNNGG	2 cut(s)	950, 1006
BsnI	GGCC	4 cut(s)	6, 58, 486, 899
Bsp1286I	GDGCHC	2 cut(s)	790, 1068
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	5 cut(s)	178, 250, 388, 464, 607
Bsp1720I	GCTNAGC	1 cut(s)	244
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	1 cut(s)	735
BspANI	GGCC	4 cut(s)	6, 58, 486, 899
BspCNI	CTCAG	4 cut(s)	664, 697, 754, 802
BspDI	ATCGAT	1 cut(s)	253
BspEI	TCCGGA	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	934
BspLI	GGNNCC	1 cut(s)	669
BspMI	ACCTGC	1 cut(s)	867
BspPI	GGATC	3 cut(s)	173, 459, 602
BsrI	ACTGG	3 cut(s)	358, 919, 955
BssECI	CCNNGG	5 cut(s)	168, 487, 538, 569, 875
BssMI	GATC	5 cut(s)	178, 250, 388, 464, 607
BssT1I	CCWWGG	3 cut(s)	168, 487, 875
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	892, 1117
Bst6I	CTCTTC	1 cut(s)	657
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstBAI	YACGTR	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	576
BstDEI	CTNAG	7 cut(s)	8, 244, 672, 705, 741, 789, 1001
BstDSI	CCRYGG	2 cut(s)	487, 569
BstF5I	GGATG	3 cut(s)	555, 826, 1105
BstFNI	CGCG	1 cut(s)	606
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	5 cut(s)	181, 253, 391, 467, 610
BstMBI	GATC	5 cut(s)	178, 250, 388, 464, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 1019
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	2 cut(s)	688, 812
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	2 cut(s)	338, 394
Bsu15I	ATCGAT	1 cut(s)	253
Bsu36I	CCTNAGG	2 cut(s)	8, 1001
BsuI	GTATCC	1 cut(s)	1033
BsuRI	GGCC	4 cut(s)	6, 58, 486, 899
BsuTUI	ATCGAT	1 cut(s)	253
BtgI	CCRYGG	2 cut(s)	487, 569
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	3 cut(s)	555, 826, 1105
BtsIMutI	CAGTG	1 cut(s)	897
BveI	ACCTGC	1 cut(s)	867
Cac8I	GCNNGC	1 cut(s)	576
CaiI	CAGNNNCTG	1 cut(s)	704
CciI	TCATGA	1 cut(s)	934
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	4, 100, 484
ClaI	ATCGAT	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	738
CviAII	CATG	5 cut(s)	488, 677, 685, 809, 935
CviQI	GTAC	1 cut(s)	738
DdeI	CTNAG	7 cut(s)	8, 244, 672, 705, 741, 789, 1001
DpnI	GATC	5 cut(s)	180, 252, 390, 466, 609
DpnII	GATC	5 cut(s)	178, 250, 388, 464, 607
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Ecl136II	GAGCTC	1 cut(s)	788
Eco130I	CCWWGG	3 cut(s)	168, 487, 875
Eco147I	AGGCCT	1 cut(s)	899
Eco24I	GRGCYC	2 cut(s)	790, 1068
Eco47I	GGWCC	1 cut(s)	100
Eco47III	AGCGCT	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	788
Eco72I	CACGTG	1 cut(s)	185
Eco81I	CCTNAGG	2 cut(s)	8, 1001
EcoICRI	GAGCTC	1 cut(s)	788
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	3 cut(s)	168, 487, 875
EcoT38I	GRGCYC	2 cut(s)	790, 1068
ErhI	CCWWGG	3 cut(s)	168, 487, 875
FaeI	CATG	5 cut(s)	491, 680, 688, 812, 938
FatI	CATG	5 cut(s)	487, 676, 684, 808, 934
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	2 cut(s)	327, 408
FokI	GGATG	3 cut(s)	542, 833, 1112
FriOI	GRGCYC	2 cut(s)	790, 1068
Fsp4HI	GCNGC	2 cut(s)	327, 408
FspBI	CTAG	2 cut(s)	323, 1126
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	2 cut(s)	327, 408
GsuI	CTGGAG	1 cut(s)	972
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	4 cut(s)	6, 58, 486, 899
HapII	CCGG	2 cut(s)	515, 944
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	5 cut(s)	491, 680, 688, 812, 938
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	1 cut(s)	957
HpaII	CCGG	2 cut(s)	515, 944
Hpy166II	GTNNAC	4 cut(s)	263, 293, 494, 848
Hpy188I	TCNGA	5 cut(s)	393, 419, 700, 744, 908
Hpy188III	TCNNGA	5 cut(s)	515, 671, 752, 935, 1037
Hpy8I	GTNNAC	4 cut(s)	263, 293, 494, 848
HpyAV	CCTTC	3 cut(s)	827, 912, 1078
HpyCH4III	ACNGT	2 cut(s)	892, 1117
HpyCH4IV	ACGT	2 cut(s)	184, 991
HpyCH4V	TGCA	5 cut(s)	234, 410, 600, 862, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 1019
HpyF3I	CTNAG	7 cut(s)	8, 244, 672, 705, 741, 789, 1001
HpySE526I	ACGT	2 cut(s)	184, 991
Hsp92II	CATG	5 cut(s)	491, 680, 688, 812, 938
HspAI	GCGC	1 cut(s)	155
Kpn2I	TCCGGA	1 cut(s)	514
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	178, 250, 388, 464, 607
LmnI	GCTCC	4 cut(s)	162, 476, 785, 946
Lsp1109I	GCAGC	2 cut(s)	338, 394
LweI	GCATC	2 cut(s)	811, 1090
MaeI	CTAG	2 cut(s)	323, 1126
MaeII	ACGT	2 cut(s)	184, 991
MaeIII	GTNAC	2 cut(s)	530, 946
MalI	GATC	5 cut(s)	180, 252, 390, 466, 609
MboI	GATC	5 cut(s)	178, 250, 388, 464, 607
MboII	GAAGA	4 cut(s)	33, 215, 517, 674
MfeI	CAATTG	1 cut(s)	981
MhlI	GDGCHC	2 cut(s)	790, 1068
MluCI	AATT	9 cut(s)	108, 437, 442, 710, 724, 747, 837, 981, 1120
MmeI	TCCRAC	1 cut(s)	987
MroI	TCCGGA	1 cut(s)	514
MroXI	GAANNNNTTC	1 cut(s)	666
MseI	TTAA	3 cut(s)	276, 441, 455
MspI	CCGG	2 cut(s)	515, 944
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	981
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	2 cut(s)	240, 1019
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	5 cut(s)	178, 250, 388, 464, 607
NlaIII	CATG	5 cut(s)	491, 680, 688, 812, 938
NlaIV	GGNNCC	1 cut(s)	669
NmuCI	GTSAC	1 cut(s)	530
NspI	RCATGY	2 cut(s)	688, 812
PagI	TCATGA	1 cut(s)	934
PceI	AGGCCT	1 cut(s)	899
PciI	ACATGT	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	1 cut(s)	957
PkrI	GCNGC	2 cut(s)	328, 409
PmaCI	CACGTG	1 cut(s)	185
PmlI	CACGTG	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	185
PscI	ACATGT	1 cut(s)	684
Psp124BI	GAGCTC	1 cut(s)	790
Psp1406I	AACGTT	1 cut(s)	991
Psp6I	CCWGG	1 cut(s)	538
PspCI	CACGTG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	3 cut(s)	4, 100, 484
PsrI	GAACNNNNNNTAC	2 cut(s)	651, 683
PstNI	CAGNNNCTG	1 cut(s)	704
RsaI	GTAC	1 cut(s)	739
RsaNI	GTAC	1 cut(s)	738
SacI	GAGCTC	1 cut(s)	790
SaqAI	TTAA	3 cut(s)	276, 441, 455
SatI	GCNGC	2 cut(s)	327, 408
Sau3AI	GATC	5 cut(s)	178, 250, 388, 464, 607
Sau96I	GGNCC	3 cut(s)	4, 100, 484
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	790, 1068
SfaNI	GCATC	2 cut(s)	811, 1090
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	100
Sse9I	AATT	9 cut(s)	108, 437, 442, 710, 724, 747, 837, 981, 1120
SseBI	AGGCCT	1 cut(s)	899
SsiI	CCGC	1 cut(s)	735
SspMI	CTAG	2 cut(s)	323, 1126
SstI	GAGCTC	1 cut(s)	790
StuI	AGGCCT	1 cut(s)	899
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	3 cut(s)	168, 487, 875
TaaI	ACNGT	2 cut(s)	892, 1117
TaiI	ACGT	2 cut(s)	187, 994
TaqI	TCGA	5 cut(s)	253, 340, 562, 751, 987
TasI	AATT	9 cut(s)	108, 437, 442, 710, 724, 747, 837, 981, 1120
TfiI	GAWTC	1 cut(s)	957
Tru1I	TTAA	3 cut(s)	276, 441, 455
Tru9I	TTAA	3 cut(s)	276, 441, 455
TscAI	CASTG	1 cut(s)	897
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	2 cut(s)	326, 407
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	4 cut(s)	105, 417, 703, 951
TspRI	CASTG	1 cut(s)	897
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	2 cut(s)	710, 837
XceI	RCATGY	2 cut(s)	688, 812
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	2 cut(s)	323, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.