AT3G13450

The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
4382198 .. 4384436
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13450.1

Sequence Viewer

Length: 1077 bp
ATGGCGGCAGCTCTTGTACGCAGATTCTGCCGGGGATCATCTTTTCCGGTCTCTGGTCATGGATATAGGATGCTATCGACGGTTGAAAATGTATCTGAAAGTGGTAAATCGATGAATCTATACTCTGCTATTAATCAAGCTCTTCACATCGCTTTAGAGACCGATCCTCGGTCTTATGTTTTTGGGGAAGATGTTGGATTTGGTGGTGTCTTCCGATGTACAACAGGATTAGCTGAACGTTTTGGGAAATCTCGAGTTTTCAACACTCCTCTCTGCGAGCAAGGCATTGTTGGCTTTGGCATTGGTTTAGCTGCAATGGGAAATCGAGTTATTGCGGAAATTCAGTTTGCGGATTATATTTTCCCGGCTTTTGATCAGATTGTTAATGAGGCTGCAAAGTTCAGATACCGAAGTGGAAACCAGTTTAACTGTGGAGGACTCACTATTAGGGCACCGTACGGAGCAGTTGGTCACGGTGGACATTACCACTCGCAGTCCCCTGAAGCTTTCTTTTGTCATGTCCCTGGTATCAAAGTTGTTATTCCTCGAAGTCCACGGGAAGCTAAGGGATTATTATTGTCATCCATCCGTGATCCGAATCCCGTTGTCTTTTTCGAACCAAAGTGGCTATATCGTCAAGCGGTAGAGGATGTCCCTGAAGATGACTATATGATACCTTTATCTGAGGCAGAGGTTATGCGAGAAGGTTCCGACATAACTCTTGTTGGATGGGGAGCACAGCTCACTATCATGGAACAAGCATGTCTTGACGCAGAAAACGAAGGAATATCGTGTGAATTGATAGATCTCAAGACTCTGATCCCTTGGGATAAGGAAATCGTTGAGACCTCAGTGAGAAAGACTGGCAGACTTCTTATTAGCCATGAAGCTCCTGTTACAGGAGGCTTTGGGGCCGAGATCGCTGCAACTATAGTTGAGCGTTGCTTCTTGAGGTTAGAAGCACCTGTAAGCAGAGTTTGTGGCCTGGACACTCCTTTCCCTCTAGTGTTCGAACCTTTCTACATGCCAACCAAGAACAAGATATTGGATGCAATCAGATCCACTGTGAATTACTAG

Protein Analysis

358

Amino Acids

39.42

Weight (kDa)

5.61

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transket_pyr PF02779 38 - 212 1.7e-38 Transketolase, pyrimidine binding domain
Transketolase_C PF02780 229 - 348 9.3e-35 Transketolase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 451
AciI CCGC 4 cut(s) 5, 335, 350, 641
AclI AACGTT 1 cut(s) 238
AclWI GGATC 5 cut(s) 43, 158, 587, 814, 1053
AcsI RAATTY 1 cut(s) 339
AcuI CTGAAG 2 cut(s) 522, 678
AfaI GTAC 3 cut(s) 18, 220, 458
AfiI CCNNNNNNNGG 3 cut(s) 53, 168, 899
AgsI TTSAA 2 cut(s) 86, 262
AjnI CCWGG 2 cut(s) 523, 984
AjuI GAANNNNNNNTTGG 2 cut(s) 1028, 1060
AluBI AGCT 8 cut(s) 11, 140, 233, 311, 506, 563, 742, 890
AluI AGCT 8 cut(s) 11, 140, 233, 311, 506, 563, 742, 890
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 3 cut(s) 55, 152, 839
AlwI GGATC 5 cut(s) 43, 158, 587, 814, 1053
AlwNI CAGNNNCTG 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 2 cut(s) 912, 982
ApeKI GCWGC 4 cut(s) 8, 311, 392, 923
ApoI RAATTY 1 cut(s) 339
AseI ATTAAT 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 912
AsuC2I CCSGG 2 cut(s) 32, 365
AsuII TTCGAA 2 cut(s) 615, 1011
AvaI CYCGRG 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 454
BaeI ACNNNNGTAYC 2 cut(s) 397, 430
BanI GGYRCC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 4 cut(s) 20, 298, 379, 910
BccI CCATC 2 cut(s) 593, 723
BcgI CGANNNNNNTGC 2 cut(s) 905, 939
BciT130I CCWGG 2 cut(s) 525, 986
BclI TGATCA 1 cut(s) 373
BcnI CCSGG 2 cut(s) 32, 365
BcoDI GTCTC 3 cut(s) 55, 152, 839
BfaI CTAG 2 cut(s) 1004, 1075
BfmI CTRYAG 1 cut(s) 930
BglII AGATCT 1 cut(s) 805
BisI GCNGC 5 cut(s) 6, 9, 312, 393, 924
BlsI GCNGC 5 cut(s) 7, 10, 313, 394, 925
Bme1390I CCNGG 4 cut(s) 32, 365, 525, 986
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 912
BmiI GGNNCC 3 cut(s) 453, 709, 913
BmrFI CCNGG 4 cut(s) 32, 365, 525, 986
BmsI GCATC 2 cut(s) 60, 1039
BpiI GAAGAC 1 cut(s) 202
BplI GAGNNNNNCTC 2 cut(s) 726, 758
Bpu10I CCTNAGC 1 cut(s) 564
Bpu14I TTCGAA 2 cut(s) 615, 1011
BpuEI CTTGAG 2 cut(s) 794, 970
BpuMI CCSGG 2 cut(s) 32, 365
Bsa29I ATCGAT 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 597
BsaI GGTCTC 3 cut(s) 55, 152, 839
BsaJI CCNNGG 5 cut(s) 31, 167, 523, 554, 824
BsaWI WCCGGW 1 cut(s) 46
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 168, 899
Bse1I ACTGG 2 cut(s) 421, 868
Bse3DI GCAATG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 2 cut(s) 525, 986
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 5 cut(s) 31, 167, 523, 554, 824
BseGI GGATG 6 cut(s) 75, 581, 585, 655, 734, 1054
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 3 cut(s) 53, 168, 899
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 675, 864
BseNI ACTGG 2 cut(s) 421, 868
BseRI GAGGAG 1 cut(s) 258
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 4 cut(s) 20, 298, 379, 910
BshFI GGCC 2 cut(s) 914, 984
BshNI GGYRCC 1 cut(s) 451
BshVI ATCGAT 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 739
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 3 cut(s) 31, 47, 365
BsiWI CGTACG 1 cut(s) 456
BslFI GGGAC 3 cut(s) 481, 506, 638
BslI CCNNNNNNNGG 3 cut(s) 53, 168, 899
BsmAI GTCTC 3 cut(s) 55, 152, 839
BsmFI GGGAC 3 cut(s) 481, 506, 638
BsnI GGCC 2 cut(s) 914, 984
Bso31I GGTCTC 3 cut(s) 55, 152, 839
BsoBI CYCGRG 1 cut(s) 252
Bsp119I TTCGAA 2 cut(s) 615, 1011
Bsp1286I GDGCHC 2 cut(s) 454, 739
Bsp1407I TGTACA 1 cut(s) 218
Bsp143I GATC 8 cut(s) 35, 163, 373, 592, 805, 819, 918, 1058
BspACI CCGC 4 cut(s) 5, 335, 350, 641
BspANI GGCC 2 cut(s) 914, 984
BspCNI CTCAG 2 cut(s) 676, 863
BspDI ATCGAT 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 453, 709, 913
BspPI GGATC 5 cut(s) 43, 158, 587, 814, 1053
BspQI GCTCTTC 1 cut(s) 147
BspT104I TTCGAA 2 cut(s) 615, 1011
BspT107I GGYRCC 1 cut(s) 451
BspTNI GGTCTC 3 cut(s) 55, 152, 839
BsrDI GCAATG 1 cut(s) 321
BsrGI TGTACA 1 cut(s) 218
BsrI ACTGG 2 cut(s) 421, 868
BssECI CCNNGG 5 cut(s) 31, 167, 523, 554, 824
BssMI GATC 8 cut(s) 35, 163, 373, 592, 805, 819, 918, 1058
BssT1I CCWWGG 1 cut(s) 824
Bst2UI CCWGG 2 cut(s) 525, 986
Bst4CI ACNGT 5 cut(s) 82, 431, 456, 476, 1066
Bst6I CTCTTC 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 27
BstAUI TGTACA 1 cut(s) 218
BstBI TTCGAA 2 cut(s) 615, 1011
BstC8I GCNNGC 1 cut(s) 278
BstDEI CTNAG 3 cut(s) 564, 684, 850
BstDSI CCRYGG 1 cut(s) 554
BstENI CCTNNNNNAGG 1 cut(s) 897
BstF5I GGATG 6 cut(s) 75, 581, 585, 655, 734, 1054
BstKTI GATC 8 cut(s) 38, 166, 376, 595, 808, 822, 921, 1061
BstMAI GTCTC 3 cut(s) 55, 152, 839
BstMBI GATC 8 cut(s) 35, 163, 373, 592, 805, 819, 918, 1058
BstMWI GCNNNNNNNGC 4 cut(s) 27, 282, 291, 920
BstNI CCWGG 2 cut(s) 525, 986
BstNSI RCATGY 2 cut(s) 765, 1027
BstSCI CCNGG 4 cut(s) 30, 363, 523, 984
BstSFI CTRYAG 1 cut(s) 930
BstSLI GKGCMC 1 cut(s) 454
BstV1I GCAGC 4 cut(s) 20, 298, 379, 910
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 2 cut(s) 805, 1058
BstYI RGATCY 2 cut(s) 805, 1058
Bsu15I ATCGAT 1 cut(s) 110
BsuRI GGCC 2 cut(s) 914, 984
BsuTUI ATCGAT 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 554
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 6 cut(s) 75, 581, 585, 655, 734, 1054
BtsIMutI CAGTG 2 cut(s) 858, 1062
Cac8I GCNNGC 1 cut(s) 278
CaiI CAGNNNCTG 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 912
ClaI ATCGAT 1 cut(s) 110
CseI GACGC 1 cut(s) 779
Csp6I GTAC 3 cut(s) 17, 219, 457
CviAII CATG 6 cut(s) 59, 518, 751, 762, 884, 1024
CviQI GTAC 3 cut(s) 17, 219, 457
DdeI CTNAG 3 cut(s) 564, 684, 850
DpnI GATC 8 cut(s) 37, 165, 375, 594, 807, 821, 920, 1060
DpnII GATC 8 cut(s) 35, 163, 373, 592, 805, 819, 918, 1058
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 824
Eco31I GGTCTC 3 cut(s) 55, 152, 839
Eco57I CTGAAG 2 cut(s) 522, 678
Eco88I CYCGRG 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 897
EcoRII CCWGG 2 cut(s) 523, 984
EcoT14I CCWWGG 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 824
FaeI CATG 6 cut(s) 62, 521, 754, 765, 887, 1027
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 3 cut(s) 481, 506, 638
FatI CATG 6 cut(s) 58, 517, 750, 761, 883, 1023
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 5 cut(s) 6, 9, 312, 393, 924
FokI GGATG 6 cut(s) 82, 568, 572, 662, 741, 1061
Fsp4HI GCNGC 5 cut(s) 6, 9, 312, 393, 924
FspBI CTAG 2 cut(s) 1004, 1075
GluI GCNGC 5 cut(s) 6, 9, 312, 393, 924
HaeIII GGCC 2 cut(s) 914, 984
HapII CCGG 3 cut(s) 31, 47, 365
HgaI GACGC 1 cut(s) 779
Hin1II CATG 6 cut(s) 62, 521, 754, 765, 887, 1027
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 5 cut(s) 24, 115, 438, 598, 814
HpaII CCGG 3 cut(s) 31, 47, 365
Hpy166II GTNNAC 2 cut(s) 479, 554
Hpy188I TCNGA 9 cut(s) 97, 215, 378, 404, 597, 685, 712, 819, 1058
Hpy188III TCNNGA 4 cut(s) 252, 767, 811, 949
Hpy8I GTNNAC 2 cut(s) 479, 554
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 698, 776
HpyCH4III ACNGT 5 cut(s) 82, 431, 456, 476, 1066
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 314, 395, 926, 1052
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 282, 291, 920
HpyF3I CTNAG 3 cut(s) 564, 684, 850
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 6 cut(s) 62, 521, 754, 765, 887, 1027
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 8 cut(s) 35, 163, 373, 592, 805, 819, 918, 1058
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 3 cut(s) 461, 734, 895
Lsp1109I GCAGC 4 cut(s) 20, 298, 379, 910
LweI GCATC 2 cut(s) 60, 1039
MaeI CTAG 2 cut(s) 1004, 1075
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 470, 895
MalI GATC 8 cut(s) 37, 165, 375, 594, 807, 821, 920, 1060
MboI GATC 8 cut(s) 35, 163, 373, 592, 805, 819, 918, 1058
MboII GAAGA 4 cut(s) 134, 200, 202, 671
MflI RGATCY 2 cut(s) 805, 1058
MhlI GDGCHC 2 cut(s) 454, 739
MluCI AATT 3 cut(s) 339, 797, 1069
MlyI GAGTC 2 cut(s) 432, 808
MmeI TCCRAC 3 cut(s) 175, 706, 735
MseI TTAA 3 cut(s) 132, 384, 426
MslI CAYNNNNRTG 1 cut(s) 749
MspI CCGG 3 cut(s) 31, 47, 365
MspR9I CCNGG 4 cut(s) 32, 365, 525, 986
MvaI CCWGG 2 cut(s) 525, 986
MwoI GCNNNNNNNGC 4 cut(s) 27, 282, 291, 920
NciI CCSGG 2 cut(s) 32, 365
NdeII GATC 8 cut(s) 35, 163, 373, 592, 805, 819, 918, 1058
NlaIII CATG 6 cut(s) 62, 521, 754, 765, 887, 1027
NlaIV GGNNCC 3 cut(s) 453, 709, 913
NmeAIII GCCGAG 1 cut(s) 940
NmuCI GTSAC 1 cut(s) 470
NspI RCATGY 2 cut(s) 765, 1027
NspV TTCGAA 2 cut(s) 615, 1011
PaeR7I CTCGAG 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PfeI GAWTC 3 cut(s) 24, 115, 598
Pfl23II CGTACG 1 cut(s) 456
PkrI GCNGC 5 cut(s) 7, 10, 313, 394, 925
PleI GAGTC 2 cut(s) 432, 808
PpsI GAGTC 2 cut(s) 432, 808
PshBI ATTAAT 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 238
Psp6I CCWGG 2 cut(s) 523, 984
PspGI CCWGG 2 cut(s) 523, 984
PspLI CGTACG 1 cut(s) 456
PspN4I GGNNCC 3 cut(s) 453, 709, 913
PspPI GGNCC 1 cut(s) 912
PstNI CAGNNNCTG 1 cut(s) 27
PsuI RGATCY 2 cut(s) 805, 1058
RsaI GTAC 3 cut(s) 18, 220, 458
RsaNI GTAC 3 cut(s) 17, 219, 457
RseI CAYNNNNRTG 1 cut(s) 749
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 3 cut(s) 132, 384, 426
SatI GCNGC 5 cut(s) 6, 9, 312, 393, 924
Sau3AI GATC 8 cut(s) 35, 163, 373, 592, 805, 819, 918, 1058
Sau96I GGNCC 1 cut(s) 912
SchI GAGTC 2 cut(s) 432, 808
ScrFI CCNGG 4 cut(s) 32, 365, 525, 986
SduI GDGCHC 2 cut(s) 454, 739
SfaNI GCATC 2 cut(s) 60, 1039
SfcI CTRYAG 1 cut(s) 930
Sfr274I CTCGAG 1 cut(s) 252
SfuI TTCGAA 2 cut(s) 615, 1011
SlaI CTCGAG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 3 cut(s) 252, 809, 949
SmoI CTYRAG 3 cut(s) 252, 809, 949
Sse9I AATT 3 cut(s) 339, 797, 1069
SsiI CCGC 4 cut(s) 5, 335, 350, 641
SspMI CTAG 2 cut(s) 1004, 1075
StyD4I CCNGG 4 cut(s) 30, 363, 523, 984
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 5 cut(s) 82, 431, 456, 476, 1066
TaiI ACGT 1 cut(s) 241
TaqI TCGA 7 cut(s) 77, 110, 253, 325, 547, 615, 1011
TaqII GACCGA 2 cut(s) 159, 176
TasI AATT 3 cut(s) 339, 797, 1069
TatI WGTACW 1 cut(s) 218
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 24, 115, 598
Tru1I TTAA 3 cut(s) 132, 384, 426
Tru9I TTAA 3 cut(s) 132, 384, 426
TscAI CASTG 2 cut(s) 858, 1069
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 4 cut(s) 8, 311, 392, 923
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 2 cut(s) 128, 900
TspGWI ACGGA 2 cut(s) 474, 578
TspRI CASTG 2 cut(s) 858, 1069
VspI ATTAAT 1 cut(s) 132
XagI CCTNNNNNAGG 1 cut(s) 897
XapI RAATTY 1 cut(s) 339
XceI RCATGY 2 cut(s) 765, 1027
XcmI CCANNNNNNNNNTGG 1 cut(s) 428
XhoI CTCGAG 1 cut(s) 252
XspI CTAG 2 cut(s) 1004, 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.