Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Reverse (-)

1090568 .. 1093454

Gene Structure 2887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00000670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGGGCGCAGCAGTGTAATGAGGAGGAGCAGATTGATGAACTGGGCCTCTCATACGAGGAGGAGCAGAAGCCACCAGTACCAGCAGCAGGCATTCTCAACCTCCTCCTCCTCCGAAACTGGAAAATCACTCAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCACGGTTCTCCCTCTCCCTCTCCCTCTTTCTTCTACAATTACAAAGTGTCCCCTTCTCTGCTTCTTCCACTTCTTTTGTTACTTATGTATTTGGAGAAGATGTGGGCTTCGGTGGGGTCTTCCGTTGTACCACAGGCTTGGCTGATCGCTTTGGATTTGGTATTGGTCTCGCAGCTATGATTGTCAATGAAGCTGCAAAATTCAGATACCGTAGTGGAAACCAATTTAACTGTGGAGGCTTAACCATAAGAGCGCCCTATGGAGCTGTAGGCCATGGTGGACATTACCACTCACAATCTCCTGAAGCTTTTTTCTGTCATGCTCCTGGTATCAAAGTGGTCATTCCTAGAAGCCCAAGACAAGCAAAAGGCTTATTGCTTTCCTGTATACGCGATCCAAACCCTGTTGTGTTTTTTGAACCAAAGTGGTTATACAGATTATCAGTAGAAGAGGTTCCAGAGCATGATTTCATGTTGCCGTTATCAGAGGCCGAGGTAATACGAGAGGGCAATGATATAACACTTGTTGGGTGGGGAGCTCAACTATCTGTAATGGAACAGGCCTGTCTAGATGCTGAAAAAGATGGAATTTCATGTGAACTGATAGACCTGCGTACTCTGATACCTTGGGATAAGGACACAGTAGAGGCTTCTGTCAAAAAGACTGGAAGGCTTCTTATTAGTCATGAAGCTCCAGTTACTGGAGGATTTGGTGCCGAAATAGCAGCTTCAATTGTTGAAAGTTGCTTCTTGAGGTTAGAAGCACCAGTCTCAAGAATATTGGACGCAATTAAAGCAACTGTAAAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

331

Amino Acids

36.34

Weight (kDa)

7.65

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	123 - 207	4.1e-16	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	224 - 321	5.5e-32	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	801
AccB1I	GGYRCC	1 cut(s)	896
AccB7I	CCANNNNNTGG	1 cut(s)	884
AccI	GTMKAC	1 cut(s)	571
AccII	CGCG	1 cut(s)	576
AclWI	GGATC	2 cut(s)	176, 572
AcsI	RAATTY	3 cut(s)	383, 771, 989
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	3 cut(s)	80, 313, 799
AfeI	AGCGCT	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	88, 884
AgsI	TTSAA	3 cut(s)	602, 915, 923
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	7 cut(s)	359, 377, 449, 491, 722, 875, 911
AluI	AGCT	7 cut(s)	359, 377, 449, 491, 722, 875, 911
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	2 cut(s)	356, 958
AlwI	GGATC	2 cut(s)	176, 572
AlwNI	CAGNNNCTG	1 cut(s)	884
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	4 cut(s)	45, 454, 672, 744
ApeKI	GCWGC	5 cut(s)	9, 85, 356, 377, 908
ApoI	RAATTY	3 cut(s)	383, 771, 989
Asp700I	GAANNNNTTC	1 cut(s)	636
AspLEI	GCGC	3 cut(s)	9, 160, 439
AspS9I	GGNCC	1 cut(s)	45
BaeI	ACNNNNGTAYC	2 cut(s)	382, 415
BanI	GGYRCC	1 cut(s)	896
BanII	GRGCYC	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	5 cut(s)	21, 97, 364, 368, 920
BccI	CCATC	2 cut(s)	155, 761
BceAI	ACGGC	1 cut(s)	646
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	356, 958
BfaI	CTAG	3 cut(s)	531, 752, 994
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	2 cut(s)	161, 440
BfuAI	ACCTGC	1 cut(s)	801
BisI	GCNGC	5 cut(s)	10, 86, 357, 378, 909
BlsI	GCNGC	5 cut(s)	11, 87, 358, 379, 910
Bme1390I	CCNGG	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	639, 898
BmrFI	CCNGG	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	745
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	295
BpmI	CTGGAG	2 cut(s)	861, 906
BpuEI	CTTGAG	2 cut(s)	940, 955
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	5 cut(s)	171, 185, 457, 675, 809
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 884
Bse1I	ACTGG	7 cut(s)	47, 76, 124, 853, 878, 889, 950
Bse3DI	GCAATG	1 cut(s)	700
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	5 cut(s)	171, 185, 457, 675, 809
BseLI	CCNNNNNNNGG	2 cut(s)	88, 884
BseMI	GCAATG	1 cut(s)	700
BseNI	ACTGG	7 cut(s)	47, 76, 124, 853, 878, 889, 950
BseRI	GAGGAG	7 cut(s)	37, 40, 73, 76, 94, 97, 100
BseXI	GCAGC	5 cut(s)	21, 97, 364, 368, 920
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	4 cut(s)	47, 456, 674, 746
BshNI	GGYRCC	1 cut(s)	896
BsiHKAI	GWGCWC	1 cut(s)	724
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	88, 884
BsmAI	GTCTC	2 cut(s)	356, 958
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	47, 456, 674, 746
Bso31I	GGTCTC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp143I	GATC	3 cut(s)	181, 328, 577
Bsp19I	CCATGG	1 cut(s)	457
BspANI	GGCC	4 cut(s)	47, 456, 674, 746
BspFNI	CGCG	1 cut(s)	576
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	2 cut(s)	639, 898
BspMI	ACCTGC	1 cut(s)	801
BspPI	GGATC	2 cut(s)	176, 572
BspT107I	GGYRCC	1 cut(s)	896
BspTNI	GGTCTC	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	700
BsrI	ACTGG	7 cut(s)	47, 76, 124, 853, 878, 889, 950
BssECI	CCNNGG	5 cut(s)	171, 185, 457, 675, 809
BssMI	GATC	3 cut(s)	181, 328, 577
BssNAI	GTATAC	1 cut(s)	572
BssT1I	CCWWGG	3 cut(s)	171, 457, 809
Bst1107I	GTATAC	1 cut(s)	572
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	5 cut(s)	189, 395, 416, 826, 985
Bst6I	CTCTTC	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	90
BstDSI	CCRYGG	2 cut(s)	185, 457
BstFNI	CGCG	1 cut(s)	576
BstH2I	RGCGCY	2 cut(s)	161, 440
BstHHI	GCGC	3 cut(s)	9, 160, 439
BstKTI	GATC	3 cut(s)	184, 331, 580
BstMAI	GTCTC	2 cut(s)	356, 958
BstMBI	GATC	3 cut(s)	181, 328, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	905, 977
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	5 cut(s)	21, 97, 364, 368, 920
BstV2I	GAAGAC	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	322
BstZ17I	GTATAC	1 cut(s)	572
BsuRI	GGCC	4 cut(s)	47, 456, 674, 746
BtgI	CCRYGG	2 cut(s)	185, 457
BtgZI	GCGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	801
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	884
CciI	TCATGA	1 cut(s)	868
CfoI	GCGC	3 cut(s)	9, 160, 439
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	3 cut(s)	79, 312, 798
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	6 cut(s)	458, 503, 647, 655, 777, 869
CviQI	GTAC	3 cut(s)	79, 312, 798
DpnI	GATC	3 cut(s)	183, 330, 579
DpnII	GATC	3 cut(s)	181, 328, 577
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Ecl136II	GAGCTC	1 cut(s)	722
Eco130I	CCWWGG	3 cut(s)	171, 457, 809
Eco147I	AGGCCT	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	724
Eco31I	GGTCTC	1 cut(s)	356
Eco47III	AGCGCT	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	722
Eco57I	CTGAAG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	722
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	3 cut(s)	171, 457, 809
EcoT38I	GRGCYC	1 cut(s)	724
ErhI	CCWWGG	3 cut(s)	171, 457, 809
FaeI	CATG	6 cut(s)	461, 506, 650, 658, 780, 872
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	6 cut(s)	457, 502, 646, 654, 776, 868
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	5 cut(s)	10, 86, 357, 378, 909
FriOI	GRGCYC	1 cut(s)	724
Fsp4HI	GCNGC	5 cut(s)	10, 86, 357, 378, 909
FspBI	CTAG	3 cut(s)	531, 752, 994
GlaI	GCGC	3 cut(s)	8, 159, 438
GluI	GCNGC	5 cut(s)	10, 86, 357, 378, 909
GsuI	CTGGAG	2 cut(s)	861, 906
HaeII	RGCGCY	2 cut(s)	161, 440
HaeIII	GGCC	4 cut(s)	47, 456, 674, 746
HgaI	GACGC	1 cut(s)	977
HhaI	GCGC	3 cut(s)	9, 160, 439
Hin1II	CATG	6 cut(s)	461, 506, 650, 658, 780, 872
Hin6I	GCGC	3 cut(s)	7, 158, 437
HinP1I	GCGC	3 cut(s)	7, 158, 437
HindIII	AAGCTT	1 cut(s)	489
Hpy166II	GTNNAC	3 cut(s)	464, 572, 782
Hpy188I	TCNGA	4 cut(s)	115, 389, 670, 804
Hpy188III	TCNNGA	6 cut(s)	485, 641, 752, 869, 934, 957
Hpy8I	GTNNAC	3 cut(s)	464, 572, 782
HpyAV	CCTTC	2 cut(s)	247, 846
HpyCH4III	ACNGT	5 cut(s)	189, 395, 416, 826, 985
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	905, 977
Hsp92II	CATG	6 cut(s)	461, 506, 650, 658, 780, 872
HspAI	GCGC	3 cut(s)	7, 158, 437
Kzo9I	GATC	3 cut(s)	181, 328, 577
LmnI	GCTCC	7 cut(s)	27, 63, 165, 446, 511, 719, 880
Lsp1109I	GCAGC	5 cut(s)	21, 97, 364, 368, 920
LweI	GCATC	1 cut(s)	745
MaeI	CTAG	3 cut(s)	531, 752, 994
MaeIII	GTNAC	2 cut(s)	262, 880
MalI	GATC	3 cut(s)	183, 330, 579
MboI	GATC	3 cut(s)	181, 328, 577
MboII	GAAGA	5 cut(s)	206, 240, 293, 295, 644
MfeI	CAATTG	1 cut(s)	915
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	7 cut(s)	221, 383, 407, 771, 915, 972, 989
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	3 cut(s)	411, 425, 975
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	2 cut(s)	905, 977
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	3 cut(s)	181, 328, 577
NlaIII	CATG	6 cut(s)	461, 506, 650, 658, 780, 872
NlaIV	GGNNCC	2 cut(s)	639, 898
NmeAIII	GCCGAG	1 cut(s)	700
PagI	TCATGA	1 cut(s)	868
PceI	AGGCCT	1 cut(s)	746
PctI	GAATGC	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	636
PflMI	CCANNNNNTGG	1 cut(s)	884
PkrI	GCNGC	5 cut(s)	11, 87, 358, 379, 910
Psp124BI	GAGCTC	1 cut(s)	724
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	639, 898
PspPI	GGNCC	1 cut(s)	45
PsrI	GAACNNNNNNTAC	2 cut(s)	621, 653
PstNI	CAGNNNCTG	1 cut(s)	884
RsaI	GTAC	3 cut(s)	80, 313, 799
RsaNI	GTAC	3 cut(s)	79, 312, 798
SacI	GAGCTC	1 cut(s)	724
SaqAI	TTAA	3 cut(s)	411, 425, 975
SatI	GCNGC	5 cut(s)	10, 86, 357, 378, 909
Sau3AI	GATC	3 cut(s)	181, 328, 577
Sau96I	GGNCC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	1 cut(s)	745
SfcI	CTRYAG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	934, 955
SmoI	CTYRAG	2 cut(s)	934, 955
Sse9I	AATT	7 cut(s)	221, 383, 407, 771, 915, 972, 989
SseBI	AGGCCT	1 cut(s)	746
SspI	AATATT	1 cut(s)	963
SspMI	CTAG	3 cut(s)	531, 752, 994
SstI	GAGCTC	1 cut(s)	724
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	3 cut(s)	171, 457, 809
TaaI	ACNGT	5 cut(s)	189, 395, 416, 826, 985
TasI	AATT	7 cut(s)	221, 383, 407, 771, 915, 972, 989
Tru1I	TTAA	3 cut(s)	411, 425, 975
Tru9I	TTAA	3 cut(s)	411, 425, 975
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	5 cut(s)	9, 85, 356, 377, 908
TspDTI	ATGAA	5 cut(s)	53, 387, 643, 765, 885
TspGWI	ACGGA	1 cut(s)	296
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	884
XapI	RAATTY	3 cut(s)	383, 771, 989
XbaI	TCTAGA	1 cut(s)	751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	3 cut(s)	531, 752, 994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.