Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Reverse (-)

194895 .. 197586

Gene Structure 2692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00210.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGCTGTGCAGATTTGGAAGATTGGTTGAAGGGGTCGGAGTTAGCAGGAGGAGGCCATTTGCAACCTCCTCCTCCTCCTCTGCCGCCGGCGGTGATGAAATGATTGTTCGTGGCACTGGCAGCAAGTCGTTGAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCACGTTCTTATGTATTTGGAGAAGATGTGAGCTTTGGTGGGGTCTTCCGTTGCACAACAGGCTTAGCTGATCGCTTCGGTAAACAAAGGGTTTTTAACACCCCTCTTTGTGAACAGGGCATTGTAGGATTCGGCATTGGTCTAGCAGCTATGGGTAATCGAGCTGTAGCAGAAATCCAATTCGCAGATTATATTTTTCCAGCTTTTGATCAGATTGTCAATGAAGCTGCAAAGTTCCGATATAGAAGTGGAAATCAATTTAATTGTGGAGGTTTAACAATTAGAACCCCCTATGGAGCTGTTGGCCACGGTGGACATTATCACTCACAGTCTCCTGAAGCTTTCTTCTGTCATGTCCCTGGTCTCAAAGTGGTCATCCCTCGAAGCCCACTGCAAGCAAAAGGCTTATTGCTGTCGTGCATACGCGATCCAAATCCTGTTGTGTTCTTCGAACCAAAGTGGTTATACAGATTATCAGTAGAAGAGGTTCCTGAGCATGATTACATGTTGCCTTTATCGGAGGCAGAGGTAATTCGAGAGGGCACCGATATAACACTTGTTGGTTGGGGAGCTCAATTATCTGTAATGGAACAGGCCTGTAAAGAAGCTGAGAGTGATGGAATTTCTTGTGAACTGATAGACCTGCGAACCCTTTTACCTTGGGACAAGTACACAGTGGAGGCCTCCGTCAGAAAGACGGGAAGGCTTCTTATAAGTCATGAAGCGCCAGTTACTGGAGGATTTGGTGCTGAAATATCCGCTTCAATTGTTGAACGCTGCTTCCTAAGGTTAGAAGCGCCTGTTGCAAGAGTATGCGGTTTGGATACCCCCTTCCCTCTCGTATTCGAGCCCTTCTACATGCCCACCAAAAACAAGATATTGGATGCAATCAAATCAACTGTAAATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

366

Amino Acids

39.92

Weight (kDa)

6.2

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	899
Acc36I	ACCTGC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	728
AccB7I	CCANNNNNTGG	1 cut(s)	920
AccII	CGCG	1 cut(s)	612
AciI	CCGC	4 cut(s)	87, 93, 945, 1002
AclWI	GGATC	2 cut(s)	179, 608
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	807, 1090
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	1 cut(s)	857
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	920
AflIII	ACRYGT	1 cut(s)	690
AgsI	TTSAA	4 cut(s)	32, 136, 951, 959
AjnI	CCWGG	1 cut(s)	544
AloI	GAACNNNNNNTCC	2 cut(s)	951, 983
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	2 cut(s)	522, 554
AlwI	GGATC	2 cut(s)	179, 608
AlwNI	CAGNNNCTG	1 cut(s)	920
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	4 cut(s)	56, 490, 780, 867
ApeKI	GCWGC	4 cut(s)	123, 332, 413, 963
ApoI	RAATTY	2 cut(s)	807, 1090
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	3 cut(s)	163, 913, 985
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	636
AxyI	CCTNAGG	1 cut(s)	971
BaeGI	GKGCMC	1 cut(s)	731
BalI	TGGCCA	1 cut(s)	492
BanI	GGYRCC	1 cut(s)	728
BanII	GRGCYC	2 cut(s)	760, 1038
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	760
BbvI	GCAGC	4 cut(s)	135, 344, 400, 950
BccI	CCATC	2 cut(s)	158, 797
BciT130I	CCWGG	1 cut(s)	546
BciVI	GTATCC	1 cut(s)	1003
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	522, 554
BfaI	CTAG	1 cut(s)	329
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	3 cut(s)	164, 914, 986
BfuAI	ACCTGC	1 cut(s)	837
BfuI	GTATCC	1 cut(s)	1003
BisI	GCNGC	5 cut(s)	87, 124, 333, 414, 964
BlpI	GCTNAGC	1 cut(s)	250
BlsI	GCNGC	5 cut(s)	88, 125, 334, 415, 965
Bme1390I	CCNGG	1 cut(s)	546
BmiI	GGNNCC	2 cut(s)	675, 730
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	1 cut(s)	1060
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	942
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu1102I	GCTNAGC	1 cut(s)	250
Bpu14I	TTCGAA	1 cut(s)	636
BsaBI	GATNNNNATC	1 cut(s)	618
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	4 cut(s)	174, 493, 544, 845
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	920
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	124, 914, 925
Bse21I	CCTNAGG	1 cut(s)	971
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	1 cut(s)	546
BseDI	CCNNGG	4 cut(s)	174, 493, 544, 845
BseGI	GGATG	2 cut(s)	561, 1075
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	1 cut(s)	920
BseMII	CTCAG	2 cut(s)	669, 786
BseNI	ACTGG	3 cut(s)	124, 914, 925
BseRI	GAGGAG	5 cut(s)	61, 64, 67, 67, 70
BseSI	GKGCMC	1 cut(s)	731
BseXI	GCAGC	4 cut(s)	135, 344, 400, 950
BsgI	GTGCAG	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	4 cut(s)	58, 492, 782, 869
BshNI	GGYRCC	1 cut(s)	728
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	527, 863
BslI	CCNNNNNNNGG	1 cut(s)	920
BsmAI	GTCTC	2 cut(s)	522, 554
BsmFI	GGGAC	2 cut(s)	527, 863
BsnI	GGCC	4 cut(s)	58, 492, 782, 869
Bso31I	GGTCTC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	636
Bsp1286I	GDGCHC	3 cut(s)	731, 760, 1038
Bsp143I	GATC	4 cut(s)	184, 256, 394, 613
Bsp1720I	GCTNAGC	1 cut(s)	250
BspACI	CCGC	4 cut(s)	87, 93, 945, 1002
BspANI	GGCC	4 cut(s)	58, 492, 782, 869
BspCNI	CTCAG	2 cut(s)	670, 787
BspFNI	CGCG	1 cut(s)	612
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	675, 730
BspMI	ACCTGC	1 cut(s)	837
BspPI	GGATC	2 cut(s)	179, 608
BspT104I	TTCGAA	1 cut(s)	636
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	554
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	3 cut(s)	124, 914, 925
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	4 cut(s)	174, 493, 544, 845
BssMI	GATC	4 cut(s)	184, 256, 394, 613
BssT1I	CCWWGG	2 cut(s)	174, 845
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	4 cut(s)	497, 516, 862, 1087
Bst6I	CTCTTC	1 cut(s)	663
BstBI	TTCGAA	1 cut(s)	636
BstC8I	GCNNGC	2 cut(s)	91, 582
BstDEI	CTNAG	4 cut(s)	250, 678, 795, 971
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	561, 1075
BstFNI	CGCG	1 cut(s)	612
BstH2I	RGCGCY	3 cut(s)	164, 914, 986
BstHHI	GCGC	3 cut(s)	163, 913, 985
BstKTI	GATC	4 cut(s)	187, 259, 397, 616
BstMAI	GTCTC	2 cut(s)	522, 554
BstMBI	GATC	4 cut(s)	184, 256, 394, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	123, 246, 989
BstNI	CCWGG	1 cut(s)	546
BstNSI	RCATGY	2 cut(s)	694, 1048
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	731
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	135, 344, 400, 950
BstV2I	GAAGAC	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	971
BsuI	GTATCC	1 cut(s)	1003
BsuRI	GGCC	4 cut(s)	58, 492, 782, 869
BtgI	CCRYGG	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	561, 1075
BtsI	GCAGTG	1 cut(s)	575
BtsIMutI	CAGTG	3 cut(s)	117, 575, 867
BveI	ACCTGC	1 cut(s)	837
Cac8I	GCNNGC	2 cut(s)	91, 582
CaiI	CAGNNNCTG	1 cut(s)	920
CciI	TCATGA	1 cut(s)	904
CfoI	GCGC	3 cut(s)	163, 913, 985
Cfr10I	RCCGGY	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	856
CviAII	CATG	5 cut(s)	539, 683, 691, 905, 1045
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	4 cut(s)	250, 678, 795, 971
DpnI	GATC	4 cut(s)	186, 258, 396, 615
DpnII	GATC	4 cut(s)	184, 256, 394, 613
EaeI	YGGCCR	1 cut(s)	490
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Ecl136II	GAGCTC	1 cut(s)	758
Eco130I	CCWWGG	2 cut(s)	174, 845
Eco147I	AGGCCT	2 cut(s)	782, 869
Eco24I	GRGCYC	2 cut(s)	760, 1038
Eco31I	GGTCTC	1 cut(s)	554
Eco47III	AGCGCT	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	543
Eco81I	CCTNAGG	1 cut(s)	971
EcoICRI	GAGCTC	1 cut(s)	758
EcoRII	CCWGG	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	174, 845
EcoT38I	GRGCYC	2 cut(s)	760, 1038
ErhI	CCWWGG	2 cut(s)	174, 845
FaeI	CATG	5 cut(s)	542, 686, 694, 908, 1048
FaqI	GGGAC	2 cut(s)	527, 863
FatI	CATG	5 cut(s)	538, 682, 690, 904, 1044
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	87, 124, 333, 414, 964
FokI	GGATG	2 cut(s)	548, 1082
FriOI	GRGCYC	2 cut(s)	760, 1038
Fsp4HI	GCNGC	5 cut(s)	87, 124, 333, 414, 964
FspBI	CTAG	1 cut(s)	329
GlaI	GCGC	3 cut(s)	162, 912, 984
GluI	GCNGC	5 cut(s)	87, 124, 333, 414, 964
GsuI	CTGGAG	1 cut(s)	942
HaeII	RGCGCY	3 cut(s)	164, 914, 986
HaeIII	GGCC	4 cut(s)	58, 492, 782, 869
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	3 cut(s)	163, 913, 985
Hin1II	CATG	5 cut(s)	542, 686, 694, 908, 1048
Hin6I	GCGC	3 cut(s)	161, 911, 983
HinP1I	GCGC	3 cut(s)	161, 911, 983
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	5 cut(s)	269, 299, 500, 818, 858
Hpy188I	TCNGA	5 cut(s)	41, 399, 425, 706, 878
Hpy188III	TCNNGA	4 cut(s)	521, 677, 722, 905
Hpy8I	GTNNAC	5 cut(s)	269, 299, 500, 818, 858
HpyAV	CCTTC	4 cut(s)	26, 882, 1027, 1048
HpyCH4III	ACNGT	4 cut(s)	497, 516, 862, 1087
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	8 cut(s)	12, 65, 240, 416, 580, 606, 992, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	123, 246, 989
HpyF3I	CTNAG	4 cut(s)	250, 678, 795, 971
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	5 cut(s)	542, 686, 694, 908, 1048
HspAI	GCGC	3 cut(s)	161, 911, 983
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	184, 256, 394, 613
LmnI	GCTCC	3 cut(s)	168, 482, 755
Lsp1109I	GCAGC	4 cut(s)	135, 344, 400, 950
LweI	GCATC	1 cut(s)	1060
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	4 cut(s)	186, 258, 396, 615
MboI	GATC	4 cut(s)	184, 256, 394, 613
MboII	GAAGA	6 cut(s)	33, 221, 223, 523, 625, 680
MfeI	CAATTG	1 cut(s)	951
MhlI	GDGCHC	3 cut(s)	731, 760, 1038
MlsI	TGGCCA	1 cut(s)	492
MluCI	AATT	9 cut(s)	365, 443, 448, 465, 717, 761, 807, 951, 1090
MluNI	TGGCCA	1 cut(s)	492
MmeI	TCCRAC	1 cut(s)	19
Mox20I	TGGCCA	1 cut(s)	492
MreI	CGCCGGCG	1 cut(s)	89
MroNI	GCCGGC	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	492
MseI	TTAA	3 cut(s)	282, 447, 461
Msp20I	TGGCCA	1 cut(s)	492
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	1 cut(s)	951
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	3 cut(s)	123, 246, 989
NaeI	GCCGGC	1 cut(s)	91
NdeII	GATC	4 cut(s)	184, 256, 394, 613
NgoMIV	GCCGGC	1 cut(s)	89
NlaIII	CATG	5 cut(s)	542, 686, 694, 908, 1048
NlaIV	GGNNCC	2 cut(s)	675, 730
NspI	RCATGY	2 cut(s)	694, 1048
NspV	TTCGAA	1 cut(s)	636
PagI	TCATGA	1 cut(s)	904
PceI	AGGCCT	2 cut(s)	782, 869
PciI	ACATGT	1 cut(s)	690
PdiI	GCCGGC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	920
PkrI	GCNGC	5 cut(s)	88, 125, 334, 415, 965
PscI	ACATGT	1 cut(s)	690
PsiI	TTATAA	1 cut(s)	899
Psp124BI	GAGCTC	1 cut(s)	760
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	675, 730
PsrI	GAACNNNNNNTAC	2 cut(s)	657, 689
PstNI	CAGNNNCTG	1 cut(s)	920
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
SacI	GAGCTC	1 cut(s)	760
SaqAI	TTAA	3 cut(s)	282, 447, 461
SatI	GCNGC	5 cut(s)	87, 124, 333, 414, 964
Sau3AI	GATC	4 cut(s)	184, 256, 394, 613
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	3 cut(s)	731, 760, 1038
SfaNI	GCATC	1 cut(s)	1060
SfcI	CTRYAG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	636
SgrAI	CRCCGGYG	1 cut(s)	89
Sse9I	AATT	9 cut(s)	365, 443, 448, 465, 717, 761, 807, 951, 1090
SseBI	AGGCCT	2 cut(s)	782, 869
SsiI	CCGC	4 cut(s)	87, 93, 945, 1002
SspMI	CTAG	1 cut(s)	329
SstI	GAGCTC	1 cut(s)	760
StuI	AGGCCT	2 cut(s)	782, 869
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	2 cut(s)	174, 845
TaaI	ACNGT	4 cut(s)	497, 516, 862, 1087
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	5 cut(s)	346, 568, 636, 721, 1032
TasI	AATT	9 cut(s)	365, 443, 448, 465, 717, 761, 807, 951, 1090
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	3 cut(s)	282, 447, 461
Tru9I	TTAA	3 cut(s)	282, 447, 461
TscAI	CASTG	3 cut(s)	124, 582, 867
TseI	GCWGC	4 cut(s)	123, 332, 413, 963
TspDTI	ATGAA	3 cut(s)	114, 423, 921
TspGWI	ACGGA	2 cut(s)	224, 862
TspRI	CASTG	3 cut(s)	124, 582, 867
Van91I	CCANNNNNTGG	1 cut(s)	920
XapI	RAATTY	2 cut(s)	807, 1090
XceI	RCATGY	2 cut(s)	694, 1048
XmnI	GAANNNNTTC	1 cut(s)	672
XspI	CTAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.