Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Reverse (-)

199317 .. 202609

Gene Structure 3293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1002200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGGCTGAGCAGATTTGGAGGACTGGTCAAACGGCTTGGAGTTGCCAGGAGAAGGCCATTTGCAACCTCCTCTTCCTCTTCCTCCTCCTCCTCCACCGCCGCCGGTGATGGAACGATTGTTCGTGGCACTGGTAGCAAATCATTGAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCTCGTTCTTATGTATTTGGAGAAGATGTGAGCTTTGGTGGGGTCTTCCGCTGCACAACAGGCTTAGCTGATCGCTTCGGTAAACAAAGGGTTTTTAATACCCCTCTTTGTGAACAGGGCATTGTAGGATTTGGCATTGGTCTAGCAGCTATGGGTAATCGAGCTGTAGCAGAAATCCAATTCGCAGATTATATTTTTCCAGCTTTTGATCAGATTGTCAACGAAGCTGCAAAGTTCAGATACCGAAGTGGAAATCAATTTAATTGTGGAGGTTTAACAATAAGAGCCCCCTATGGAGCTGTCGGCCACGGTGGACATTATCACTCACAATCTCCTGAAGCTTTCTTCTGTCATGCCCCTGGTCTCAAAGTGGTCATCCCTCGAAGTCCACTCCAAGCAAAAGGCTTATTGCTGTCGTGCATACGTGATCCAAATCCTGTTGTGTTTTTTGAACCAAAGTGGTTATACAGATTATCAGTAGAAGAGGTTCCTGAGCATGATTACATGTTGCCTTTATCAGAGGCAGAGGTAATTCGAGAGGGCACTGATATAACGCTTGTTGGTTGGGGAGCTCAGTTATCTGTAATGGAACAGGCCTGTAAAGAAGCTGAAAAAGATGGAATTTCTTGCGAACTGATAGACCTGCGAACTCTTTTACCGTGGGACAAGGATACAGTGGAGGCCTCTGTCAGAAAGACAGGAAGGCTTCTTATAAGTCATGAAGCGCCAGTTACTGGAGGATTTGGTGCTGAAATATCCGCTTCAATTGTTGAACGCTGCTTCCTAAGGTTAGAAGCACCTGTTGCAAGAGTCTGCGGTTTGGATACCCCCTTCCCTCTCATCTTCGAGCCCTTTTATATGCCCACCAAAAACAAGATATTGGATGCAATCAAATCAACCGTAAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

370

Amino Acids

40.14

Weight (kDa)

7.04

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	50 - 223	6e-37	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	240 - 359	2.3e-37	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	911
Acc36I	ACCTGC	1 cut(s)	849
AccB7I	CCANNNNNTGG	1 cut(s)	932
AciI	CCGC	5 cut(s)	99, 102, 247, 957, 1014
AclWI	GGATC	2 cut(s)	191, 620
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	2 cut(s)	819, 1102
AcuI	CTGAAG	1 cut(s)	555
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	54, 932
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	4 cut(s)	148, 650, 963, 971
AjnI	CCWGG	2 cut(s)	47, 556
AloI	GAACNNNNNNTCC	4 cut(s)	105, 137, 963, 995
Alw21I	GWGCWC	1 cut(s)	772
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	191, 620
AlwNI	CAGNNNCTG	1 cut(s)	932
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	4 cut(s)	56, 502, 792, 879
ApeKI	GCWGC	4 cut(s)	249, 344, 425, 975
ApoI	RAATTY	2 cut(s)	819, 1102
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	175, 925
AsuHPI	GGTGA	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	743
BaeI	ACNNNNGTAYC	2 cut(s)	430, 463
BanII	GRGCYC	3 cut(s)	487, 772, 1050
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	772
BbvI	GCAGC	4 cut(s)	236, 356, 412, 962
BccI	CCATC	3 cut(s)	104, 170, 809
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	49, 558
BciVI	GTATCC	2 cut(s)	862, 1015
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	2 cut(s)	341, 1108
BfmI	CTRYAG	1 cut(s)	363
BfoI	RGCGCY	2 cut(s)	176, 926
BfuAI	ACCTGC	1 cut(s)	849
BfuI	GTATCC	2 cut(s)	862, 1015
BisI	GCNGC	5 cut(s)	102, 250, 345, 426, 976
BlpI	GCTNAGC	2 cut(s)	8, 262
BlsI	GCNGC	5 cut(s)	103, 251, 346, 427, 977
Bme1390I	CCNGG	2 cut(s)	49, 558
BmiI	GGNNCC	1 cut(s)	687
BmrFI	CCNGG	2 cut(s)	49, 558
BmsI	GCATC	1 cut(s)	1072
BpiI	GAAGAC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	954
Bpu10I	CCTNAGC	1 cut(s)	690
Bpu1102I	GCTNAGC	2 cut(s)	8, 262
BsaAI	YACGTR	1 cut(s)	623
BsaBI	GATNNNNATC	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	4 cut(s)	186, 505, 556, 857
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 932
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	4 cut(s)	30, 136, 926, 937
Bse21I	CCTNAGG	1 cut(s)	983
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	49, 558
BseDI	CCNNGG	4 cut(s)	186, 505, 556, 857
BseGI	GGATG	2 cut(s)	573, 1087
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	2 cut(s)	54, 932
BseMII	CTCAG	2 cut(s)	681, 785
BseNI	ACTGG	4 cut(s)	30, 136, 926, 937
BseRI	GAGGAG	4 cut(s)	61, 76, 79, 82
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	4 cut(s)	236, 356, 412, 962
BsgI	GTGCAG	1 cut(s)	235
BshFI	GGCC	4 cut(s)	58, 504, 794, 881
BsiHKAI	GWGCWC	1 cut(s)	772
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	54, 932
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	4 cut(s)	58, 504, 794, 881
Bso31I	GGTCTC	1 cut(s)	566
Bsp1286I	GDGCHC	4 cut(s)	487, 743, 772, 1050
Bsp143I	GATC	4 cut(s)	196, 268, 406, 625
Bsp1720I	GCTNAGC	2 cut(s)	8, 262
BspACI	CCGC	5 cut(s)	99, 102, 247, 957, 1014
BspANI	GGCC	4 cut(s)	58, 504, 794, 881
BspCNI	CTCAG	2 cut(s)	682, 784
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	687
BspMI	ACCTGC	1 cut(s)	849
BspPI	GGATC	2 cut(s)	191, 620
BspTNI	GGTCTC	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	30, 136, 926, 937
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	4 cut(s)	186, 505, 556, 857
BssMI	GATC	4 cut(s)	196, 268, 406, 625
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	49, 558
Bst4CI	ACNGT	4 cut(s)	509, 858, 874, 1099
Bst6I	CTCTTC	3 cut(s)	79, 85, 675
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstBAI	YACGTR	1 cut(s)	623
BstDEI	CTNAG	5 cut(s)	8, 262, 690, 771, 983
BstDSI	CCRYGG	2 cut(s)	505, 857
BstF5I	GGATG	2 cut(s)	573, 1087
BstH2I	RGCGCY	2 cut(s)	176, 926
BstHHI	GCGC	2 cut(s)	175, 925
BstKTI	GATC	4 cut(s)	199, 271, 409, 628
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	4 cut(s)	196, 268, 406, 625
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 258, 1001
BstNI	CCWGG	2 cut(s)	49, 558
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	2 cut(s)	47, 556
BstSFI	CTRYAG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	4 cut(s)	236, 356, 412, 962
BstV2I	GAAGAC	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	983
BsuI	GTATCC	2 cut(s)	862, 1015
BsuRI	GGCC	4 cut(s)	58, 504, 794, 881
BtgI	CCRYGG	2 cut(s)	505, 857
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	573, 1087
BtsIMutI	CAGTG	3 cut(s)	129, 741, 879
BveI	ACCTGC	1 cut(s)	849
CaiI	CAGNNNCTG	1 cut(s)	932
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	2 cut(s)	175, 925
Cfr10I	RCCGGY	1 cut(s)	104
CviAII	CATG	4 cut(s)	551, 695, 703, 917
DdeI	CTNAG	5 cut(s)	8, 262, 690, 771, 983
DpnI	GATC	4 cut(s)	198, 270, 408, 627
DpnII	GATC	4 cut(s)	196, 268, 406, 625
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	3 cut(s)	79, 85, 675
EarI	CTCTTC	3 cut(s)	79, 85, 675
Ecl136II	GAGCTC	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	186
Eco147I	AGGCCT	2 cut(s)	794, 881
Eco24I	GRGCYC	3 cut(s)	487, 772, 1050
Eco31I	GGTCTC	1 cut(s)	566
Eco47III	AGCGCT	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	555
Eco81I	CCTNAGG	1 cut(s)	983
EcoICRI	GAGCTC	1 cut(s)	770
EcoRII	CCWGG	2 cut(s)	47, 556
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	3 cut(s)	487, 772, 1050
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	554, 698, 706, 920
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	4 cut(s)	550, 694, 702, 916
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	5 cut(s)	102, 250, 345, 426, 976
FokI	GGATG	2 cut(s)	560, 1094
FriOI	GRGCYC	3 cut(s)	487, 772, 1050
Fsp4HI	GCNGC	5 cut(s)	102, 250, 345, 426, 976
FspBI	CTAG	2 cut(s)	341, 1108
GlaI	GCGC	2 cut(s)	174, 924
GluI	GCNGC	5 cut(s)	102, 250, 345, 426, 976
GsuI	CTGGAG	1 cut(s)	954
HaeII	RGCGCY	2 cut(s)	176, 926
HaeIII	GGCC	4 cut(s)	58, 504, 794, 881
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	2 cut(s)	175, 925
Hin1II	CATG	4 cut(s)	554, 698, 706, 920
Hin6I	GCGC	2 cut(s)	173, 923
HinP1I	GCGC	2 cut(s)	173, 923
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	1 cut(s)	1008
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	5 cut(s)	281, 311, 418, 512, 587
Hpy188I	TCNGA	4 cut(s)	411, 437, 718, 890
Hpy188III	TCNNGA	4 cut(s)	533, 689, 734, 917
Hpy8I	GTNNAC	5 cut(s)	281, 311, 418, 512, 587
HpyAV	CCTTC	3 cut(s)	48, 894, 1039
HpyCH4III	ACNGT	4 cut(s)	509, 858, 874, 1099
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	6 cut(s)	65, 252, 428, 618, 1004, 1085
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 258, 1001
HpyF3I	CTNAG	5 cut(s)	8, 262, 690, 771, 983
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	4 cut(s)	554, 698, 706, 920
HspAI	GCGC	2 cut(s)	173, 923
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	196, 268, 406, 625
LmnI	GCTCC	3 cut(s)	180, 494, 767
Lsp1109I	GCAGC	4 cut(s)	236, 356, 412, 962
LweI	GCATC	1 cut(s)	1072
MaeI	CTAG	2 cut(s)	341, 1108
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	4 cut(s)	198, 270, 408, 627
MboI	GATC	4 cut(s)	196, 268, 406, 625
MboII	GAAGA	7 cut(s)	66, 72, 233, 235, 535, 692, 1033
MfeI	CAATTG	1 cut(s)	963
MhlI	GDGCHC	4 cut(s)	487, 743, 772, 1050
MluCI	AATT	7 cut(s)	377, 455, 460, 729, 819, 963, 1102
MlyI	GAGTC	1 cut(s)	1017
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	3 cut(s)	294, 459, 473
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	49, 558
MunI	CAATTG	1 cut(s)	963
MvaI	CCWGG	2 cut(s)	49, 558
MwoI	GCNNNNNNNGC	3 cut(s)	135, 258, 1001
NdeII	GATC	4 cut(s)	196, 268, 406, 625
NlaIII	CATG	4 cut(s)	554, 698, 706, 920
NlaIV	GGNNCC	1 cut(s)	687
NspI	RCATGY	1 cut(s)	706
PagI	TCATGA	1 cut(s)	916
PceI	AGGCCT	2 cut(s)	794, 881
PciI	ACATGT	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	684
PflMI	CCANNNNNTGG	1 cut(s)	932
PkrI	GCNGC	5 cut(s)	103, 251, 346, 427, 977
PleI	GAGTC	1 cut(s)	1016
PpsI	GAGTC	1 cut(s)	1016
Ppu21I	YACGTR	1 cut(s)	623
PscI	ACATGT	1 cut(s)	702
PsiI	TTATAA	1 cut(s)	911
Psp124BI	GAGCTC	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	47, 556
PspGI	CCWGG	2 cut(s)	47, 556
PspN4I	GGNNCC	1 cut(s)	687
PsrI	GAACNNNNNNTAC	2 cut(s)	669, 701
PstNI	CAGNNNCTG	1 cut(s)	932
SacI	GAGCTC	1 cut(s)	772
SaqAI	TTAA	3 cut(s)	294, 459, 473
SatI	GCNGC	5 cut(s)	102, 250, 345, 426, 976
Sau3AI	GATC	4 cut(s)	196, 268, 406, 625
SchI	GAGTC	1 cut(s)	1017
ScrFI	CCNGG	2 cut(s)	49, 558
SduI	GDGCHC	4 cut(s)	487, 743, 772, 1050
SfaNI	GCATC	1 cut(s)	1072
SfcI	CTRYAG	1 cut(s)	363
SgrAI	CRCCGGYG	1 cut(s)	104
Sse9I	AATT	7 cut(s)	377, 455, 460, 729, 819, 963, 1102
SseBI	AGGCCT	2 cut(s)	794, 881
SsiI	CCGC	5 cut(s)	99, 102, 247, 957, 1014
SspMI	CTAG	2 cut(s)	341, 1108
SstI	GAGCTC	1 cut(s)	772
StuI	AGGCCT	2 cut(s)	794, 881
StyD4I	CCNGG	2 cut(s)	47, 556
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	509, 858, 874, 1099
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	4 cut(s)	358, 580, 733, 1044
TasI	AATT	7 cut(s)	377, 455, 460, 729, 819, 963, 1102
TauI	GCSGC	1 cut(s)	104
Tru1I	TTAA	3 cut(s)	294, 459, 473
Tru9I	TTAA	3 cut(s)	294, 459, 473
TscAI	CASTG	3 cut(s)	136, 748, 879
TseI	GCWGC	4 cut(s)	249, 344, 425, 975
TspDTI	ATGAA	1 cut(s)	933
TspRI	CASTG	3 cut(s)	136, 748, 879
Van91I	CCANNNNNTGG	1 cut(s)	932
XapI	RAATTY	2 cut(s)	819, 1102
XceI	RCATGY	1 cut(s)	706
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	2 cut(s)	341, 1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.