Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Forward (+)

88115268 .. 88118407

Gene Structure 3140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG574300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGAGGTGGAACTCAAAACTGCCCTCCATAATCCATATCCGGCCAGTTGGTAGAAGAAACTCTTGTTATTGTCAAAGAGAGATGGGGCGCAGCAGTGTAATGAGGAGGAGCAGATGCAGATTGATGAACTGGGCGGCCTCTGATACGAGGAGCAGCAGCAGAAGCCAGCAGCAGGCATTCTCAACCTCCTCCTCCGAAACTGGAAAATCACTCAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCACGTACTTATGTATTTGGAGAAGATGTGGGCTTCGGTGGGGTCTTCCGTTGTACCACAGGCTTGGCTGATCGCTTTGGTAAACAAAGGGTTTTCAATACCCCTCTTTGTGAACAGGGCATTGTAGGATTTGGTATTGGTCTCGCAGCTATGGGCAATCGAGCTGTTGCAGAAATCCAATTTGCAGATTATATTTTTCCCGCTTTTGATCAGATTGTCAATGAAGCTGCAAAATTCAGATACCGTAGTGGAAACCAATTTAACTGTGGAGGCTTAACCATAAGAGCGCCCTATGGAGCTGTAGGCCACGGTGGACATTACCACTCACAATCTCCTGAAGCTTTTTTCTGTCATGCTCCTGGTATCAAAGTGGTCATTCCTAGAAGCCCACGACAAGCAAAAGGCTTATTGCTTTCCTGTATACGCGATCCAAACCCTGTTGTGTTTTTTGAACCAAAGTGGTTATACAGATTAGCAGTAGAAGAGGTTCCTGAGCACGATTTCATGTTGCCGTTATCAGAGGCTGAGGTAATACGAGAGGGCAATGATATAACACTTGTTGGGTGGGGAGCTCAACTATCTGTAATGGAACAGGCCTGTCTAGATGCTGAAAAAGATGGAATTTCATGTGAACTGATAGACCTGCGTACTCTGATACCTTGGGATAAGGACACAGTAGAGGCTTCTGTCAAAAAGACTGGAAGGCTTCTTATTAGTCATGAAGCTCCAGTTACCGGAGGATTTGGTGCCGAAATAGCAGCTTCAATTGTTGAAAGTTGCTTCTTGAGGTTAGAAGCACCAGTCTCAAGAGTATGTGGTCTGGATACCCCCTTCCCTCTTGTGTTTGAACCTTTCTATATGCCCACAAAGAACAAGATATTGGACGCAATTAAAACAACTGTAAATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

391

Amino Acids

43.31

Weight (kDa)

8.22

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	72 - 245	8.2e-38	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	262 - 381	1.2e-36	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	915
AccB1I	GGYRCC	1 cut(s)	1010
AccI	GTMKAC	1 cut(s)	685
AccII	CGCG	1 cut(s)	690
AciI	CCGC	2 cut(s)	134, 465
AclWI	GGATC	2 cut(s)	257, 686
AcoI	YGGCCR	1 cut(s)	41
AcsI	RAATTY	2 cut(s)	497, 885
AcuI	CTGAAG	1 cut(s)	621
AfaI	GTAC	3 cut(s)	271, 319, 913
AfeI	AGCGCT	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	172, 998
AgsI	TTSAA	5 cut(s)	361, 716, 1029, 1037, 1112
AjnI	CCWGG	1 cut(s)	622
AjuI	GAANNNNNNNTTGG	2 cut(s)	1127, 1159
AluBI	AGCT	8 cut(s)	413, 428, 491, 563, 605, 836, 989, 1025
AluI	AGCT	8 cut(s)	413, 428, 491, 563, 605, 836, 989, 1025
Alw21I	GWGCWC	2 cut(s)	762, 838
Alw26I	GTCTC	2 cut(s)	410, 1072
AlwI	GGATC	2 cut(s)	257, 686
AlwNI	CAGNNNCTG	1 cut(s)	788
Aor51HI	AGCGCT	1 cut(s)	240
AoxI	GGCC	4 cut(s)	41, 135, 568, 858
ApeKI	GCWGC	7 cut(s)	90, 153, 156, 169, 410, 491, 1022
ApoI	RAATTY	2 cut(s)	497, 885
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	3 cut(s)	90, 241, 553
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
BanI	GGYRCC	1 cut(s)	1010
BanII	GRGCYC	1 cut(s)	838
BbsI	GAAGAC	1 cut(s)	301
Bbv12I	GWGCWC	2 cut(s)	762, 838
BbvCI	CCTCAGC	1 cut(s)	789
BbvI	GCAGC	7 cut(s)	102, 165, 168, 181, 422, 478, 1034
BccI	CCATC	3 cut(s)	76, 236, 875
BceAI	ACGGC	1 cut(s)	760
BciT130I	CCWGG	1 cut(s)	624
BciVI	GTATCC	1 cut(s)	1081
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	410, 1072
BfaI	CTAG	3 cut(s)	645, 866, 1174
BfmI	CTRYAG	1 cut(s)	564
BfoI	RGCGCY	2 cut(s)	242, 554
BfuAI	ACCTGC	1 cut(s)	915
BfuI	GTATCC	1 cut(s)	1081
BisI	GCNGC	8 cut(s)	91, 135, 154, 157, 170, 411, 492, 1023
BlsI	GCNGC	8 cut(s)	92, 136, 155, 158, 171, 412, 493, 1024
Bme1390I	CCNGG	1 cut(s)	624
BmiI	GGNNCC	2 cut(s)	753, 1012
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	104, 859
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	975
Bpu10I	CCTNAGC	2 cut(s)	756, 789
BpuEI	CTTGAG	2 cut(s)	1054, 1069
BsaAI	YACGTR	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	3 cut(s)	252, 571, 923
BsaWI	WCCGGW	1 cut(s)	998
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 998
Bse1I	ACTGG	6 cut(s)	44, 134, 205, 967, 992, 1064
Bse3DI	GCAATG	1 cut(s)	814
BseBI	CCWGG	1 cut(s)	624
BseDI	CCNNGG	3 cut(s)	252, 571, 923
BseLI	CCNNNNNNNGG	2 cut(s)	172, 998
BseMI	GCAATG	1 cut(s)	814
BseMII	CTCAG	2 cut(s)	747, 780
BseNI	ACTGG	6 cut(s)	44, 134, 205, 967, 992, 1064
BseRI	GAGGAG	5 cut(s)	118, 121, 163, 178, 181
BseXI	GCAGC	7 cut(s)	102, 165, 168, 181, 422, 478, 1034
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	4 cut(s)	43, 137, 570, 860
BshNI	GGYRCC	1 cut(s)	1010
BsiHKAI	GWGCWC	2 cut(s)	762, 838
BsiSI	CCGG	2 cut(s)	40, 999
BslI	CCNNNNNNNGG	2 cut(s)	172, 998
BsmAI	GTCTC	2 cut(s)	410, 1072
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	4 cut(s)	43, 137, 570, 860
Bso31I	GGTCTC	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	762, 838
Bsp143I	GATC	4 cut(s)	262, 334, 472, 691
BspACI	CCGC	2 cut(s)	134, 465
BspANI	GGCC	4 cut(s)	43, 137, 570, 860
BspCNI	CTCAG	2 cut(s)	748, 781
BspFNI	CGCG	1 cut(s)	690
BspHI	TCATGA	1 cut(s)	982
BspLI	GGNNCC	2 cut(s)	753, 1012
BspMI	ACCTGC	1 cut(s)	915
BspPI	GGATC	2 cut(s)	257, 686
BspT107I	GGYRCC	1 cut(s)	1010
BspTNI	GGTCTC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	814
BsrI	ACTGG	6 cut(s)	44, 134, 205, 967, 992, 1064
BssECI	CCNNGG	3 cut(s)	252, 571, 923
BssMI	GATC	4 cut(s)	262, 334, 472, 691
BssNAI	GTATAC	1 cut(s)	686
BssT1I	CCWWGG	2 cut(s)	252, 923
Bst1107I	GTATAC	1 cut(s)	686
Bst2UI	CCWGG	1 cut(s)	624
Bst4CI	ACNGT	5 cut(s)	509, 530, 575, 940, 1165
Bst6I	CTCTTC	1 cut(s)	741
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	167, 174
BstDEI	CTNAG	2 cut(s)	756, 789
BstDSI	CCRYGG	1 cut(s)	571
BstFNI	CGCG	1 cut(s)	690
BstH2I	RGCGCY	2 cut(s)	242, 554
BstHHI	GCGC	3 cut(s)	90, 241, 553
BstKTI	GATC	4 cut(s)	265, 337, 475, 694
BstMAI	GTCTC	2 cut(s)	410, 1072
BstMBI	GATC	4 cut(s)	262, 334, 472, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 1019
BstNI	CCWGG	1 cut(s)	624
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	7 cut(s)	102, 165, 168, 181, 422, 478, 1034
BstV2I	GAAGAC	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	328
BstZ17I	GTATAC	1 cut(s)	686
BsuI	GTATCC	1 cut(s)	1081
BsuRI	GGCC	4 cut(s)	43, 137, 570, 860
BtgI	CCRYGG	1 cut(s)	571
BtgZI	GCGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	915
Cac8I	GCNNGC	2 cut(s)	167, 174
CaiI	CAGNNNCTG	1 cut(s)	788
CciI	TCATGA	1 cut(s)	982
CfoI	GCGC	3 cut(s)	90, 241, 553
CseI	GACGC	1 cut(s)	1157
Csp6I	GTAC	3 cut(s)	270, 318, 912
CviAII	CATG	4 cut(s)	617, 769, 891, 983
CviQI	GTAC	3 cut(s)	270, 318, 912
DdeI	CTNAG	2 cut(s)	756, 789
DpnI	GATC	4 cut(s)	264, 336, 474, 693
DpnII	GATC	4 cut(s)	262, 334, 472, 691
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	741
EarI	CTCTTC	1 cut(s)	741
Ecl136II	GAGCTC	1 cut(s)	836
Eco130I	CCWWGG	2 cut(s)	252, 923
Eco147I	AGGCCT	1 cut(s)	860
Eco24I	GRGCYC	1 cut(s)	838
Eco31I	GGTCTC	1 cut(s)	410
Eco47III	AGCGCT	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	836
Eco57I	CTGAAG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	836
EcoRII	CCWGG	1 cut(s)	622
EcoT14I	CCWWGG	2 cut(s)	252, 923
EcoT38I	GRGCYC	1 cut(s)	838
ErhI	CCWWGG	2 cut(s)	252, 923
FaeI	CATG	4 cut(s)	620, 772, 894, 986
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FatI	CATG	4 cut(s)	616, 768, 890, 982
FauI	CCCGC	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	685
Fnu4HI	GCNGC	8 cut(s)	91, 135, 154, 157, 170, 411, 492, 1023
FriOI	GRGCYC	1 cut(s)	838
Fsp4HI	GCNGC	8 cut(s)	91, 135, 154, 157, 170, 411, 492, 1023
FspBI	CTAG	3 cut(s)	645, 866, 1174
GlaI	GCGC	3 cut(s)	89, 240, 552
GluI	GCNGC	8 cut(s)	91, 135, 154, 157, 170, 411, 492, 1023
GsuI	CTGGAG	1 cut(s)	975
HaeII	RGCGCY	2 cut(s)	242, 554
HaeIII	GGCC	4 cut(s)	43, 137, 570, 860
HapII	CCGG	2 cut(s)	40, 999
HgaI	GACGC	1 cut(s)	1157
HhaI	GCGC	3 cut(s)	90, 241, 553
Hin1II	CATG	4 cut(s)	620, 772, 894, 986
Hin6I	GCGC	3 cut(s)	88, 239, 551
HinP1I	GCGC	3 cut(s)	88, 239, 551
HindIII	AAGCTT	1 cut(s)	603
HpaII	CCGG	2 cut(s)	40, 999
Hpy166II	GTNNAC	5 cut(s)	347, 377, 578, 686, 896
Hpy188I	TCNGA	6 cut(s)	142, 196, 477, 503, 784, 918
Hpy188III	TCNNGA	7 cut(s)	599, 755, 866, 983, 1048, 1071, 1085
Hpy8I	GTNNAC	5 cut(s)	347, 377, 578, 686, 896
HpyAV	CCTTC	2 cut(s)	960, 1105
HpyCH4III	ACNGT	5 cut(s)	509, 530, 575, 940, 1165
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	117, 434, 449, 494
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 1019
HpyF3I	CTNAG	2 cut(s)	756, 789
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	4 cut(s)	620, 772, 894, 986
HspAI	GCGC	3 cut(s)	88, 239, 551
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	262, 334, 472, 691
LmnI	GCTCC	7 cut(s)	108, 150, 246, 560, 625, 833, 994
Lsp1109I	GCAGC	7 cut(s)	102, 165, 168, 181, 422, 478, 1034
LweI	GCATC	2 cut(s)	104, 859
MaeI	CTAG	3 cut(s)	645, 866, 1174
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	1 cut(s)	994
MalI	GATC	4 cut(s)	264, 336, 474, 693
MboI	GATC	4 cut(s)	262, 334, 472, 691
MboII	GAAGA	4 cut(s)	66, 299, 301, 758
MfeI	CAATTG	1 cut(s)	1029
MhlI	GDGCHC	2 cut(s)	762, 838
MluCI	AATT	7 cut(s)	443, 497, 521, 885, 1029, 1152, 1168
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	3 cut(s)	525, 539, 1155
MspI	CCGG	2 cut(s)	40, 999
MspR9I	CCNGG	1 cut(s)	624
MunI	CAATTG	1 cut(s)	1029
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	162, 1019
NdeII	GATC	4 cut(s)	262, 334, 472, 691
NlaIII	CATG	4 cut(s)	620, 772, 894, 986
NlaIV	GGNNCC	2 cut(s)	753, 1012
PagI	TCATGA	1 cut(s)	982
PceI	AGGCCT	1 cut(s)	860
PctI	GAATGC	1 cut(s)	176
PdmI	GAANNNNTTC	1 cut(s)	750
PkrI	GCNGC	8 cut(s)	92, 136, 155, 158, 171, 412, 493, 1024
Ppu21I	YACGTR	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	838
Psp6I	CCWGG	1 cut(s)	622
PspGI	CCWGG	1 cut(s)	622
PspN4I	GGNNCC	2 cut(s)	753, 1012
PsrI	GAACNNNNNNTAC	2 cut(s)	735, 767
PstNI	CAGNNNCTG	1 cut(s)	788
RsaI	GTAC	3 cut(s)	271, 319, 913
RsaNI	GTAC	3 cut(s)	270, 318, 912
SacI	GAGCTC	1 cut(s)	838
SaqAI	TTAA	3 cut(s)	525, 539, 1155
SatI	GCNGC	8 cut(s)	91, 135, 154, 157, 170, 411, 492, 1023
Sau3AI	GATC	4 cut(s)	262, 334, 472, 691
ScrFI	CCNGG	1 cut(s)	624
SduI	GDGCHC	2 cut(s)	762, 838
SfaNI	GCATC	2 cut(s)	104, 859
SfcI	CTRYAG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	1048, 1069
SmoI	CTYRAG	2 cut(s)	1048, 1069
Sse9I	AATT	7 cut(s)	443, 497, 521, 885, 1029, 1152, 1168
SseBI	AGGCCT	1 cut(s)	860
SsiI	CCGC	2 cut(s)	134, 465
SspMI	CTAG	3 cut(s)	645, 866, 1174
SstI	GAGCTC	1 cut(s)	838
StuI	AGGCCT	1 cut(s)	860
StyD4I	CCNGG	1 cut(s)	622
StyI	CCWWGG	2 cut(s)	252, 923
TaaI	ACNGT	5 cut(s)	509, 530, 575, 940, 1165
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	424
TasI	AATT	7 cut(s)	443, 497, 521, 885, 1029, 1152, 1168
TauI	GCSGC	1 cut(s)	137
Tru1I	TTAA	3 cut(s)	525, 539, 1155
Tru9I	TTAA	3 cut(s)	525, 539, 1155
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	7 cut(s)	90, 153, 156, 169, 410, 491, 1022
TspDTI	ATGAA	5 cut(s)	140, 501, 757, 879, 999
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	100
XapI	RAATTY	2 cut(s)	497, 885
XbaI	TCTAGA	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	527
XmiI	GTMKAC	1 cut(s)	685
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	3 cut(s)	645, 866, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.