Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Forward (+)

92845576 .. 92849046

Gene Structure 3471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG540700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAGGTGGAACTCAAAACTGCCCTGCATAATCCATATCCATGTTGTAGAGAAGAAACTGTGTCACTCTTGTTATTGTCAAAGAGAGATGGGGCGCAGCAGTGTAATGAGCAGGAGCAGATTGATGCACTGGGCCTCTCATACGAGGAGGAGCCACCAGCACCAGCAGCAGGCATTCTCAACCTCCTCCGACGAAACTGGAAAATCACTCAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCACGTACTTATGTATTTGGAGAAGATGTGGGCTTCGGTGGGGTCTTCCGTTGTACCACAGGCTTGGCTGATCGCTTTGGTAAAAAAAGGGTTTTCAATACCCCTCTTTGTGAACAGGGCATTGTAGGATTTGGTATTGGTCTTGCAGCTATGGGCAACCGAGCTGTTGCAGAAATCCAATTTGCAGATTATATTTTTCCCGCTTTTGATCAGATTGTCAATGAAGCTGCAAAATTCAGATACCGTAGTGGAAACCAATTTAACTGTGGAGGCTTAACCATAAGAGCGCCCTATGGAGCTGTAGGCCACGGTGGACATTACCACTCACAATCTCCTGAAGCTTTTTTCTGTCATGTTCCTGGTATCAAAGTGGTCATTCCTAGAAGCCCACTGCAAGCAAAAGGCTTGTTGCTTTCCTCTATACGCGATCCAAACCCTGTTGTGTTTTTTGAACCAAAGTGGTTATACAGATTGTCAGTAGAAGAGGTTCCTGAGCATGATTTCATGTTGCCATTATCAGAGGCCGAGGTAATACGAGAGGGCAATGATATAACACTTGTTGGGTGGGGAGCTCAACTATCTGTAATGGAACAGGCCTGTCTAGATGCTGAAAAAGATGGAATTTCATGTGAACTGATAGACCTGCGTACTCTGATACCTTGGGATAAGGACACAGTAGAGGCTTCTGTCAAAAAGACTGGAAGGCTTCTTATTAGTCATGAAGCTCCAGTTACCGGAGGATTTGGTGCCGAAATAGCAGCTTCAATTGTTGAAAGTTGCTTTTTGAGGTTAGAAGCACCAGTCTCAAGAGTATGTGGTCTGGATACCCCCTTCCCTCTTGTGTTTGAACCCTTCTATATGCCCACAAAGAATAAGATATTGGACGCAATTAAAACAACTGTAAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

390

Amino Acids

43.38

Weight (kDa)

7.2

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	71 - 244	5.7e-38	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	261 - 380	1.2e-36	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	1007
AccII	CGCG	1 cut(s)	687
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	2 cut(s)	254, 683
AcsI	RAATTY	2 cut(s)	494, 882
AcuI	CTGAAG	1 cut(s)	618
AfaI	GTAC	4 cut(s)	268, 316, 910, 1169
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	169, 995
AgsI	TTSAA	5 cut(s)	358, 713, 1026, 1034, 1109
AjnI	CCWGG	1 cut(s)	619
AjuI	GAANNNNNNNTTGG	2 cut(s)	1124, 1156
AluBI	AGCT	8 cut(s)	410, 425, 488, 560, 602, 833, 986, 1022
AluI	AGCT	8 cut(s)	410, 425, 488, 560, 602, 833, 986, 1022
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	1 cut(s)	1069
AlwI	GGATC	2 cut(s)	254, 683
Aor51HI	AGCGCT	1 cut(s)	237
AoxI	GGCC	4 cut(s)	132, 565, 783, 855
ApeKI	GCWGC	5 cut(s)	96, 166, 407, 488, 1019
ApoI	RAATTY	2 cut(s)	494, 882
Asp700I	GAANNNNTTC	1 cut(s)	747
AspLEI	GCGC	3 cut(s)	96, 238, 550
AspS9I	GGNCC	1 cut(s)	132
BaeI	ACNNNNGTAYC	2 cut(s)	493, 526
BanI	GGYRCC	1 cut(s)	1007
BanII	GRGCYC	1 cut(s)	835
BbsI	GAAGAC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	835
BbvI	GCAGC	5 cut(s)	108, 178, 419, 475, 1031
BccI	CCATC	3 cut(s)	82, 233, 872
BciT130I	CCWGG	1 cut(s)	621
BciVI	GTATCC	1 cut(s)	1078
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	1069
BfaI	CTAG	3 cut(s)	642, 863, 1171
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	2 cut(s)	239, 551
BfuAI	ACCTGC	1 cut(s)	912
BfuI	GTATCC	1 cut(s)	1078
BisI	GCNGC	5 cut(s)	97, 167, 408, 489, 1020
BlsI	GCNGC	5 cut(s)	98, 168, 409, 490, 1021
BmcAI	AGTACT	1 cut(s)	1169
Bme1390I	CCNGG	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	3 cut(s)	152, 750, 1009
BmrFI	CCNGG	1 cut(s)	621
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	114, 856
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	298
BpmI	CTGGAG	1 cut(s)	972
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	1051
BsaAI	YACGTR	1 cut(s)	266
BsaJI	CCNNGG	4 cut(s)	249, 568, 786, 920
BsaWI	WCCGGW	1 cut(s)	995
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 995
Bse1I	ACTGG	5 cut(s)	134, 202, 964, 989, 1061
Bse3DI	GCAATG	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	4 cut(s)	249, 568, 786, 920
BseLI	CCNNNNNNNGG	2 cut(s)	169, 995
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	5 cut(s)	134, 202, 964, 989, 1061
BseRI	GAGGAG	3 cut(s)	160, 163, 175
BseXI	GCAGC	5 cut(s)	108, 178, 419, 475, 1031
Bsh1236I	CGCG	1 cut(s)	687
BshFI	GGCC	4 cut(s)	134, 567, 785, 857
BshNI	GGYRCC	1 cut(s)	1007
BsiHKAI	GWGCWC	1 cut(s)	835
BsiSI	CCGG	1 cut(s)	996
BslI	CCNNNNNNNGG	2 cut(s)	169, 995
BsmAI	GTCTC	1 cut(s)	1069
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	4 cut(s)	134, 567, 785, 857
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp143I	GATC	4 cut(s)	259, 331, 469, 688
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	4 cut(s)	134, 567, 785, 857
BspCNI	CTCAG	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	687
BspHI	TCATGA	1 cut(s)	979
BspLI	GGNNCC	3 cut(s)	152, 750, 1009
BspMI	ACCTGC	1 cut(s)	912
BspPI	GGATC	2 cut(s)	254, 683
BspT107I	GGYRCC	1 cut(s)	1007
BsrDI	GCAATG	1 cut(s)	811
BsrI	ACTGG	5 cut(s)	134, 202, 964, 989, 1061
BssECI	CCNNGG	4 cut(s)	249, 568, 786, 920
BssMI	GATC	4 cut(s)	259, 331, 469, 688
BssT1I	CCWWGG	2 cut(s)	249, 920
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	6 cut(s)	60, 506, 527, 572, 937, 1162
Bst6I	CTCTTC	1 cut(s)	738
BstBAI	YACGTR	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	171, 657
BstDEI	CTNAG	1 cut(s)	753
BstDSI	CCRYGG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	687
BstH2I	RGCGCY	2 cut(s)	239, 551
BstHHI	GCGC	3 cut(s)	96, 238, 550
BstKTI	GATC	4 cut(s)	262, 334, 472, 691
BstMAI	GTCTC	1 cut(s)	1069
BstMBI	GATC	4 cut(s)	259, 331, 469, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 1016
BstNI	CCWGG	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	561
BstUI	CGCG	1 cut(s)	687
BstV1I	GCAGC	5 cut(s)	108, 178, 419, 475, 1031
BstV2I	GAAGAC	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	325
BsuI	GTATCC	1 cut(s)	1078
BsuRI	GGCC	4 cut(s)	134, 567, 785, 857
BtgI	CCRYGG	1 cut(s)	568
BtgZI	GCGATG	1 cut(s)	229
BtsI	GCAGTG	2 cut(s)	106, 650
BtsIMutI	CAGTG	3 cut(s)	106, 127, 650
BveI	ACCTGC	1 cut(s)	912
Cac8I	GCNNGC	2 cut(s)	171, 657
CciI	TCATGA	1 cut(s)	979
CfoI	GCGC	3 cut(s)	96, 238, 550
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	1 cut(s)	1154
Csp6I	GTAC	4 cut(s)	267, 315, 909, 1168
CviAII	CATG	6 cut(s)	41, 614, 758, 766, 888, 980
CviQI	GTAC	4 cut(s)	267, 315, 909, 1168
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	4 cut(s)	261, 333, 471, 690
DpnII	GATC	4 cut(s)	259, 331, 469, 688
Eam1104I	CTCTTC	1 cut(s)	738
EarI	CTCTTC	1 cut(s)	738
Ecl136II	GAGCTC	1 cut(s)	833
Eco130I	CCWWGG	2 cut(s)	249, 920
Eco147I	AGGCCT	1 cut(s)	857
Eco24I	GRGCYC	1 cut(s)	835
Eco47III	AGCGCT	1 cut(s)	237
Eco53kI	GAGCTC	1 cut(s)	833
Eco57I	CTGAAG	1 cut(s)	618
EcoICRI	GAGCTC	1 cut(s)	833
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	249, 920
EcoT38I	GRGCYC	1 cut(s)	835
ErhI	CCWWGG	2 cut(s)	249, 920
FaeI	CATG	6 cut(s)	44, 617, 761, 769, 891, 983
FatI	CATG	6 cut(s)	40, 613, 757, 765, 887, 979
FauI	CCCGC	1 cut(s)	469
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	97, 167, 408, 489, 1020
FriOI	GRGCYC	1 cut(s)	835
Fsp4HI	GCNGC	5 cut(s)	97, 167, 408, 489, 1020
FspBI	CTAG	3 cut(s)	642, 863, 1171
GlaI	GCGC	3 cut(s)	95, 237, 549
GluI	GCNGC	5 cut(s)	97, 167, 408, 489, 1020
GsuI	CTGGAG	1 cut(s)	972
HaeII	RGCGCY	2 cut(s)	239, 551
HaeIII	GGCC	4 cut(s)	134, 567, 785, 857
HapII	CCGG	1 cut(s)	996
HgaI	GACGC	1 cut(s)	1154
HhaI	GCGC	3 cut(s)	96, 238, 550
Hin1II	CATG	6 cut(s)	44, 617, 761, 769, 891, 983
Hin6I	GCGC	3 cut(s)	94, 236, 548
HinP1I	GCGC	3 cut(s)	94, 236, 548
HindIII	AAGCTT	1 cut(s)	600
HpaII	CCGG	1 cut(s)	996
Hpy166II	GTNNAC	3 cut(s)	374, 575, 893
Hpy188I	TCNGA	5 cut(s)	190, 474, 500, 781, 915
Hpy188III	TCNNGA	6 cut(s)	596, 752, 863, 980, 1068, 1082
Hpy8I	GTNNAC	3 cut(s)	374, 575, 893
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	957, 1102, 1123
HpyCH4III	ACNGT	6 cut(s)	60, 506, 527, 572, 937, 1162
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	7 cut(s)	27, 127, 407, 431, 446, 491, 655
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 1016
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	6 cut(s)	44, 617, 761, 769, 891, 983
HspAI	GCGC	3 cut(s)	94, 236, 548
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	259, 331, 469, 688
LmnI	GCTCC	6 cut(s)	114, 150, 243, 557, 830, 991
Lsp1109I	GCAGC	5 cut(s)	108, 178, 419, 475, 1031
LweI	GCATC	2 cut(s)	114, 856
MaeI	CTAG	3 cut(s)	642, 863, 1171
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	62, 991
MalI	GATC	4 cut(s)	261, 333, 471, 690
MboI	GATC	4 cut(s)	259, 331, 469, 688
MboII	GAAGA	4 cut(s)	64, 296, 298, 755
MfeI	CAATTG	1 cut(s)	1026
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	6 cut(s)	440, 494, 518, 882, 1026, 1149
MmeI	TCCRAC	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	747
MseI	TTAA	3 cut(s)	522, 536, 1152
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	996
MspR9I	CCNGG	1 cut(s)	621
MunI	CAATTG	1 cut(s)	1026
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	687
MwoI	GCNNNNNNNGC	2 cut(s)	166, 1016
NdeII	GATC	4 cut(s)	259, 331, 469, 688
NlaIII	CATG	6 cut(s)	44, 617, 761, 769, 891, 983
NlaIV	GGNNCC	3 cut(s)	152, 750, 1009
NmeAIII	GCCGAG	1 cut(s)	811
NmuCI	GTSAC	1 cut(s)	62
PagI	TCATGA	1 cut(s)	979
PceI	AGGCCT	1 cut(s)	857
PctI	GAATGC	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	747
PkrI	GCNGC	5 cut(s)	98, 168, 409, 490, 1021
Ppu21I	YACGTR	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	835
Psp6I	CCWGG	1 cut(s)	619
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	3 cut(s)	152, 750, 1009
PspPI	GGNCC	1 cut(s)	132
PsrI	GAACNNNNNNTAC	2 cut(s)	732, 764
RsaI	GTAC	4 cut(s)	268, 316, 910, 1169
RsaNI	GTAC	4 cut(s)	267, 315, 909, 1168
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	1 cut(s)	835
SaqAI	TTAA	3 cut(s)	522, 536, 1152
SatI	GCNGC	5 cut(s)	97, 167, 408, 489, 1020
Sau3AI	GATC	4 cut(s)	259, 331, 469, 688
Sau96I	GGNCC	1 cut(s)	132
ScaI	AGTACT	1 cut(s)	1169
ScrFI	CCNGG	1 cut(s)	621
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	2 cut(s)	114, 856
SfcI	CTRYAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	1066
SmoI	CTYRAG	1 cut(s)	1066
Sse9I	AATT	6 cut(s)	440, 494, 518, 882, 1026, 1149
SseBI	AGGCCT	1 cut(s)	857
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	3 cut(s)	642, 863, 1171
SstI	GAGCTC	1 cut(s)	835
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	1 cut(s)	619
StyI	CCWWGG	2 cut(s)	249, 920
TaaI	ACNGT	6 cut(s)	60, 506, 527, 572, 937, 1162
TaiI	ACGT	1 cut(s)	268
TasI	AATT	6 cut(s)	440, 494, 518, 882, 1026, 1149
TatI	WGTACW	1 cut(s)	1167
Tru1I	TTAA	3 cut(s)	522, 536, 1152
Tru9I	TTAA	3 cut(s)	522, 536, 1152
TscAI	CASTG	3 cut(s)	106, 134, 657
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	5 cut(s)	96, 166, 407, 488, 1019
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	4 cut(s)	498, 754, 876, 996
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	3 cut(s)	106, 134, 657
XapI	RAATTY	2 cut(s)	494, 882
XbaI	TCTAGA	1 cut(s)	862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	747
XspI	CTAG	3 cut(s)	642, 863, 1171
ZrmI	AGTACT	1 cut(s)	1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.