Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010042

Physical Location & Seq

Genomic Coordinates Forward (+)

86847392 .. 86850416

Gene Structure 3025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G050280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGGCGCAGCAGTGTAATGAGCAGGAGCAGATTGATGAACTGGGCCTCTCATACGAGGAGCAGAAGCCACCAGTACCAGCAGCAGGCATTCTCAACCTCCTCCGAAACTGGAAAATCACTCAACCTCTACTCTGCCATCAACCAAGCGCTCCACATCGCCTTGGAAACTGATCCACGTACTTACGTATTTGGAGAAGATGTGGGCTTCGGTGGGGTCTTCCGTTGTACCACAGGCTTGGCTGATCGCTTTGGTAAAAAAAGGGTTTTCAATACCCCTCTTTGTGAACAGGGCATTGTAGGATTTGGTATTGGTCTTGCAGCTATGGGCAATCGAGCTGTTGCAGAAATCCAATTTGCAGATTATATTTTTCCCGCTTTTGATCAGATTGTCAATGAAGCTGCAAAATTCAGATACCGTAGTGGAAATCAATTTAACTGTGGAGGCTTAACCATAAGAGCGCCCTATGGAGCTGTAGGCCACGGTGGACATTACCACTCACAATCTCCTGAAGCTTTTTTCTGTCATGTTCCTGGTATCAAAGTGGTCATTCCTAGAAGCCCACGACAAGCAAAAGGCTTATTGCTTTCCTGTATACGCGATCCAAACCCTGTTGTGTTTTTTGAACCAAAGTGGTTATACAGATTATCAGTAGAAGAGGTTCCTGAGCATGATTTCATGTTGCCGTTATCAGAGGCCGAGGTAATACGAGAGGGCAATGATATAACACTTGTTGGGTGGGGAGCTCAACTATCTGTAATGGAACAGGCCTGTCTAGATGCTGAAAAAGATGGAATTTCATGTGAACTGATAGACCTGCGTACTCTGATACCTTGGGATAAGGACACAGTAGAGGCTTCTGTAAAAAAGACTGGAAGGCTTCTTATTAGTCATGAAGCTCCAGTTACCGGAGGATTTGGTGCCGAAATAGCAGCTTCAATTGTTGAAAGTTGCTTCTTGAGGTTAGAAGCACCAGTCTCAAGAGTATGTGGTCTGGATACCCCCTTCCCTCTTGTGTTTGAACCTTTCTATATGCCCACAAAGAACAAGATATTGGACGCAATTAAAACAACTGTAAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

361

Amino Acids

39.87

Weight (kDa)

6.51

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transket_pyr	PF02779	42 - 215	2.8e-38	Transketolase, pyrimidine binding domain
Transketolase_C	PF02780	232 - 351	1e-36	Transketolase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55510 AT3G13450
fragaria_vesca	FvH4_3g45860 FvH4_3g45860 FvH4_3g45860
malus_domestica	MD03G1002200.v1.1 MD11G1002200.v1.1
prunus_persica	Prupe.6G002000_v2.0.a1 Prupe.6G002000_v2.0.a1
pyrus_communis	pycom03g00210
rosa_chinensis	RchiOBHm_Chr5g0083951
rosa_laevigata	RLG00000037067
rosa_multiflora	Rmu_ssc0000372.1_g000073
rosa_roxburghii	Rroxscaffold_1G00000670
rosa_rugosa	Rorug05G0487800 Rorug05G0487900
rosa_samantha	Rh5AG540700 Rh5BG565700 Rh5CG587600 Rh5DG574300
rosa_wichuraiana	Rw5G050280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	825
AccB1I	GGYRCC	1 cut(s)	920
AccI	GTMKAC	1 cut(s)	595
AccII	CGCG	1 cut(s)	600
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	2 cut(s)	167, 596
AcsI	RAATTY	2 cut(s)	407, 795
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	4 cut(s)	77, 181, 229, 823
AfeI	AGCGCT	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	85, 908
AgsI	TTSAA	5 cut(s)	271, 626, 939, 947, 1022
AjnI	CCWGG	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	1037, 1069
AluBI	AGCT	8 cut(s)	323, 338, 401, 473, 515, 746, 899, 935
AluI	AGCT	8 cut(s)	323, 338, 401, 473, 515, 746, 899, 935
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	1 cut(s)	982
AlwI	GGATC	2 cut(s)	167, 596
Aor51HI	AGCGCT	1 cut(s)	150
AoxI	GGCC	4 cut(s)	45, 478, 696, 768
ApeKI	GCWGC	5 cut(s)	9, 82, 320, 401, 932
ApoI	RAATTY	2 cut(s)	407, 795
Asp700I	GAANNNNTTC	1 cut(s)	660
AspLEI	GCGC	3 cut(s)	9, 151, 463
AspS9I	GGNCC	1 cut(s)	45
BaeI	ACNNNNGTAYC	2 cut(s)	406, 439
BanI	GGYRCC	1 cut(s)	920
BanII	GRGCYC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	5 cut(s)	21, 94, 332, 388, 944
BccI	CCATC	2 cut(s)	146, 785
BceAI	ACGGC	1 cut(s)	670
BciT130I	CCWGG	1 cut(s)	534
BciVI	GTATCC	1 cut(s)	991
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	982
BfaI	CTAG	3 cut(s)	555, 776, 1084
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	2 cut(s)	152, 464
BfuAI	ACCTGC	1 cut(s)	825
BfuI	GTATCC	1 cut(s)	991
BisI	GCNGC	5 cut(s)	10, 83, 321, 402, 933
BlsI	GCNGC	5 cut(s)	11, 84, 322, 403, 934
Bme1390I	CCNGG	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	663, 922
BmrFI	CCNGG	1 cut(s)	534
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	769
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	885
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	2 cut(s)	964, 979
BsaAI	YACGTR	2 cut(s)	179, 187
BsaJI	CCNNGG	4 cut(s)	162, 481, 699, 833
BsaWI	WCCGGW	1 cut(s)	908
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 908
Bse1I	ACTGG	6 cut(s)	47, 73, 115, 877, 902, 974
Bse3DI	GCAATG	1 cut(s)	724
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	4 cut(s)	162, 481, 699, 833
BseLI	CCNNNNNNNGG	2 cut(s)	85, 908
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	6 cut(s)	47, 73, 115, 877, 902, 974
BseRI	GAGGAG	2 cut(s)	73, 91
BseXI	GCAGC	5 cut(s)	21, 94, 332, 388, 944
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	4 cut(s)	47, 480, 698, 770
BshNI	GGYRCC	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	748
BsiSI	CCGG	1 cut(s)	909
BslI	CCNNNNNNNGG	2 cut(s)	85, 908
BsmAI	GTCTC	1 cut(s)	982
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	47, 480, 698, 770
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	4 cut(s)	172, 244, 382, 601
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	4 cut(s)	47, 480, 698, 770
BspCNI	CTCAG	1 cut(s)	658
BspFNI	CGCG	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	2 cut(s)	663, 922
BspMI	ACCTGC	1 cut(s)	825
BspPI	GGATC	2 cut(s)	167, 596
BspT107I	GGYRCC	1 cut(s)	920
BsrDI	GCAATG	1 cut(s)	724
BsrI	ACTGG	6 cut(s)	47, 73, 115, 877, 902, 974
BssECI	CCNNGG	4 cut(s)	162, 481, 699, 833
BssMI	GATC	4 cut(s)	172, 244, 382, 601
BssNAI	GTATAC	1 cut(s)	596
BssT1I	CCWWGG	2 cut(s)	162, 833
Bst1107I	GTATAC	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	5 cut(s)	419, 440, 485, 850, 1075
Bst6I	CTCTTC	1 cut(s)	651
BstBAI	YACGTR	2 cut(s)	179, 187
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	666
BstDSI	CCRYGG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	600
BstH2I	RGCGCY	2 cut(s)	152, 464
BstHHI	GCGC	3 cut(s)	9, 151, 463
BstKTI	GATC	4 cut(s)	175, 247, 385, 604
BstMAI	GTCTC	1 cut(s)	982
BstMBI	GATC	4 cut(s)	172, 244, 382, 601
BstMWI	GCNNNNNNNGC	1 cut(s)	929
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	474
BstSNI	TACGTA	1 cut(s)	187
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	5 cut(s)	21, 94, 332, 388, 944
BstV2I	GAAGAC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	238
BstZ17I	GTATAC	1 cut(s)	596
BsuI	GTATCC	1 cut(s)	991
BsuRI	GGCC	4 cut(s)	47, 480, 698, 770
BtgI	CCRYGG	1 cut(s)	481
BtgZI	GCGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
BveI	ACCTGC	1 cut(s)	825
Cac8I	GCNNGC	1 cut(s)	87
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	3 cut(s)	9, 151, 463
Cfr13I	GGNCC	1 cut(s)	45
CseI	GACGC	1 cut(s)	1067
Csp6I	GTAC	4 cut(s)	76, 180, 228, 822
CviAII	CATG	5 cut(s)	527, 671, 679, 801, 893
CviQI	GTAC	4 cut(s)	76, 180, 228, 822
DdeI	CTNAG	1 cut(s)	666
DpnI	GATC	4 cut(s)	174, 246, 384, 603
DpnII	GATC	4 cut(s)	172, 244, 382, 601
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	746
Eco105I	TACGTA	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	162, 833
Eco147I	AGGCCT	1 cut(s)	770
Eco24I	GRGCYC	1 cut(s)	748
Eco47III	AGCGCT	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	746
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	162, 833
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	2 cut(s)	162, 833
FaeI	CATG	5 cut(s)	530, 674, 682, 804, 896
FatI	CATG	5 cut(s)	526, 670, 678, 800, 892
FauI	CCCGC	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	5 cut(s)	10, 83, 321, 402, 933
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	5 cut(s)	10, 83, 321, 402, 933
FspBI	CTAG	3 cut(s)	555, 776, 1084
GlaI	GCGC	3 cut(s)	8, 150, 462
GluI	GCNGC	5 cut(s)	10, 83, 321, 402, 933
GsuI	CTGGAG	1 cut(s)	885
HaeII	RGCGCY	2 cut(s)	152, 464
HaeIII	GGCC	4 cut(s)	47, 480, 698, 770
HapII	CCGG	1 cut(s)	909
HgaI	GACGC	1 cut(s)	1067
HhaI	GCGC	3 cut(s)	9, 151, 463
Hin1II	CATG	5 cut(s)	530, 674, 682, 804, 896
Hin6I	GCGC	3 cut(s)	7, 149, 461
HinP1I	GCGC	3 cut(s)	7, 149, 461
HindIII	AAGCTT	1 cut(s)	513
HpaII	CCGG	1 cut(s)	909
Hpy166II	GTNNAC	5 cut(s)	287, 488, 596, 806, 1078
Hpy188I	TCNGA	5 cut(s)	106, 387, 413, 694, 828
Hpy188III	TCNNGA	7 cut(s)	509, 665, 776, 893, 958, 981, 995
Hpy8I	GTNNAC	5 cut(s)	287, 488, 596, 806, 1078
HpyAV	CCTTC	2 cut(s)	870, 1015
HpyCH4III	ACNGT	5 cut(s)	419, 440, 485, 850, 1075
HpyCH4IV	ACGT	2 cut(s)	178, 186
HpyCH4V	TGCA	4 cut(s)	320, 344, 359, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	929
HpyF3I	CTNAG	1 cut(s)	666
HpySE526I	ACGT	2 cut(s)	178, 186
Hsp92II	CATG	5 cut(s)	530, 674, 682, 804, 896
HspAI	GCGC	3 cut(s)	7, 149, 461
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	172, 244, 382, 601
LmnI	GCTCC	6 cut(s)	27, 60, 156, 470, 743, 904
Lsp1109I	GCAGC	5 cut(s)	21, 94, 332, 388, 944
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	3 cut(s)	555, 776, 1084
MaeII	ACGT	2 cut(s)	178, 186
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	4 cut(s)	174, 246, 384, 603
MboI	GATC	4 cut(s)	172, 244, 382, 601
MboII	GAAGA	3 cut(s)	209, 211, 668
MfeI	CAATTG	1 cut(s)	939
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	6 cut(s)	353, 407, 431, 795, 939, 1062
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	3 cut(s)	435, 449, 1065
MspI	CCGG	1 cut(s)	909
MspR9I	CCNGG	1 cut(s)	534
MunI	CAATTG	1 cut(s)	939
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	534
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	1 cut(s)	929
NdeII	GATC	4 cut(s)	172, 244, 382, 601
NlaIII	CATG	5 cut(s)	530, 674, 682, 804, 896
NlaIV	GGNNCC	2 cut(s)	663, 922
NmeAIII	GCCGAG	1 cut(s)	724
PagI	TCATGA	1 cut(s)	892
PceI	AGGCCT	1 cut(s)	770
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	660
PkrI	GCNGC	5 cut(s)	11, 84, 322, 403, 934
Ppu21I	YACGTR	2 cut(s)	179, 187
Psp124BI	GAGCTC	1 cut(s)	748
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	663, 922
PspPI	GGNCC	1 cut(s)	45
PsrI	GAACNNNNNNTAC	2 cut(s)	645, 677
RsaI	GTAC	4 cut(s)	77, 181, 229, 823
RsaNI	GTAC	4 cut(s)	76, 180, 228, 822
SacI	GAGCTC	1 cut(s)	748
SaqAI	TTAA	3 cut(s)	435, 449, 1065
SatI	GCNGC	5 cut(s)	10, 83, 321, 402, 933
Sau3AI	GATC	4 cut(s)	172, 244, 382, 601
Sau96I	GGNCC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	958, 979
SmoI	CTYRAG	2 cut(s)	958, 979
SnaBI	TACGTA	1 cut(s)	187
Sse9I	AATT	6 cut(s)	353, 407, 431, 795, 939, 1062
SseBI	AGGCCT	1 cut(s)	770
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	3 cut(s)	555, 776, 1084
SstI	GAGCTC	1 cut(s)	748
StuI	AGGCCT	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	162, 833
TaaI	ACNGT	5 cut(s)	419, 440, 485, 850, 1075
TaiI	ACGT	2 cut(s)	181, 189
TaqI	TCGA	1 cut(s)	334
TasI	AATT	6 cut(s)	353, 407, 431, 795, 939, 1062
Tru1I	TTAA	3 cut(s)	435, 449, 1065
Tru9I	TTAA	3 cut(s)	435, 449, 1065
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	5 cut(s)	9, 82, 320, 401, 932
TspDTI	ATGAA	5 cut(s)	53, 411, 667, 789, 909
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	2 cut(s)	407, 795
XbaI	TCTAGA	1 cut(s)	775
XmiI	GTMKAC	1 cut(s)	595
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	3 cut(s)	555, 776, 1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.