PAPA-1-like conserved region
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56460 AT1G56460 AT1G56460 |
| fragaria_vesca | FvH4_6g07480 FvH4_6g07480 FvH4_6g07480 FvH4_6g07480 |
| malus_domestica | MD00G1208200.v1.1 MD04G1214800.v1.1 MD04G1215000.v1.1 MD12G1205400.v1.1 |
| prunus_persica | Prupe.6G312500_v2.0.a1 |
| pyrus_communis | pycom12g19330 |
| rosa_chinensis | RchiOBHm_Chr3g0457151 RchiOBHm_Chr3g0457181 |
| rosa_laevigata | RLG00000025244 |
| rosa_multiflora | Rmu_sc0000488.1_g000012 |
| rosa_roxburghii | Rroxscaffold_6G00422130 |
| rosa_rugosa | Rorug03G0019200 Rorug03G0019300 Rorug03G0019300 Rorug03G0019400 |
| rosa_samantha | Rh3AG079100 Rh3BG080800 Rh3CG080900 Rh3DG082800 |
| rosa_wichuraiana | Rw3G006800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 436 |
| AccI | GTMKAC | 1 cut(s) | 1003 |
| AccII | CGCG | 2 cut(s) | 935, 1402 |
| AciI | CCGC | 3 cut(s) | 1400, 1402, 1415 |
| AcsI | RAATTY | 3 cut(s) | 486, 669, 791 |
| AcuI | CTGAAG | 3 cut(s) | 279, 975, 1305 |
| AcvI | CACGTG | 1 cut(s) | 800 |
| AdeI | CACNNNGTG | 1 cut(s) | 803 |
| AfaI | GTAC | 2 cut(s) | 273, 1429 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 261 |
| AflIII | ACRYGT | 1 cut(s) | 622 |
| AgsI | TTSAA | 4 cut(s) | 192, 492, 674, 1372 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 309, 999 |
| AjiI | CACGTC | 1 cut(s) | 623 |
| AjnI | CCWGG | 1 cut(s) | 480 |
| AluBI | AGCT | 6 cut(s) | 317, 763, 919, 953, 1115, 1157 |
| AluI | AGCT | 6 cut(s) | 317, 763, 919, 953, 1115, 1157 |
| Alw26I | GTCTC | 1 cut(s) | 1123 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 134, 1172 |
| Ama87I | CYCGRG | 1 cut(s) | 564 |
| AoxI | GGCC | 4 cut(s) | 77, 238, 1045, 1254 |
| ApeKI | GCWGC | 4 cut(s) | 1121, 1154, 1268, 1476 |
| ApoI | RAATTY | 3 cut(s) | 486, 669, 791 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 264, 669 |
| AspLEI | GCGC | 1 cut(s) | 935 |
| AspS9I | GGNCC | 3 cut(s) | 744, 1316, 1418 |
| AsuHPI | GGTGA | 1 cut(s) | 1321 |
| AvaI | CYCGRG | 1 cut(s) | 564 |
| AvaII | GGWCC | 3 cut(s) | 744, 1316, 1418 |
| BauI | CACGAG | 1 cut(s) | 1041 |
| BbrPI | CACGTG | 1 cut(s) | 800 |
| BbsI | GAAGAC | 2 cut(s) | 744, 1254 |
| BbvCI | CCTCAGC | 2 cut(s) | 1116, 1173 |
| BbvI | GCAGC | 4 cut(s) | 1108, 1166, 1255, 1488 |
| BccI | CCATC | 4 cut(s) | 127, 395, 835, 1306 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 159, 193 |
| BciT130I | CCWGG | 1 cut(s) | 482 |
| BclI | TGATCA | 1 cut(s) | 1096 |
| BcoDI | GTCTC | 1 cut(s) | 1123 |
| BfaI | CTAG | 6 cut(s) | 276, 920, 942, 1065, 1158, 1206 |
| BfmI | CTRYAG | 2 cut(s) | 711, 1269 |
| BisI | GCNGC | 4 cut(s) | 1122, 1155, 1269, 1477 |
| BlsI | GCNGC | 4 cut(s) | 1123, 1156, 1270, 1478 |
| Bme1390I | CCNGG | 1 cut(s) | 482 |
| Bme18I | GGWCC | 3 cut(s) | 744, 1316, 1418 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 309, 999 |
| BmeT110I | CYCGRG | 1 cut(s) | 564 |
| BmgBI | CACGTC | 1 cut(s) | 623 |
| BmgT120I | GGNCC | 3 cut(s) | 744, 1316, 1418 |
| BmiI | GGNNCC | 3 cut(s) | 1317, 1327, 1419 |
| BmrFI | CCNGG | 1 cut(s) | 482 |
| BmsI | GCATC | 6 cut(s) | 260, 404, 445, 455, 850, 1475 |
| BpiI | GAAGAC | 2 cut(s) | 744, 1254 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1116, 1173 |
| BsaAI | YACGTR | 1 cut(s) | 800 |
| BsaJI | CCNNGG | 6 cut(s) | 80, 208, 459, 768, 1257, 1400 |
| BsaWI | WCCGGW | 1 cut(s) | 606 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 261 |
| Bse1I | ACTGG | 1 cut(s) | 128 |
| Bse3DI | GCAATG | 2 cut(s) | 68, 113 |
| BseBI | CCWGG | 1 cut(s) | 482 |
| BseDI | CCNNGG | 6 cut(s) | 80, 208, 459, 768, 1257, 1400 |
| BseGI | GGATG | 7 cut(s) | 119, 187, 251, 395, 637, 693, 883 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BseMI | GCAATG | 2 cut(s) | 68, 113 |
| BseMII | CTCAG | 3 cut(s) | 694, 1107, 1164 |
| BseNI | ACTGG | 1 cut(s) | 128 |
| BseRI | GAGGAG | 1 cut(s) | 963 |
| BseXI | GCAGC | 4 cut(s) | 1108, 1166, 1255, 1488 |
| BsgI | GTGCAG | 1 cut(s) | 1495 |
| Bsh1236I | CGCG | 2 cut(s) | 935, 1402 |
| Bsh1285I | CGRYCG | 1 cut(s) | 503 |
| BshFI | GGCC | 4 cut(s) | 79, 240, 1047, 1256 |
| BsiEI | CGRYCG | 1 cut(s) | 503 |
| BsiHKCI | CYCGRG | 1 cut(s) | 564 |
| BsiSI | CCGG | 1 cut(s) | 607 |
| BslFI | GGGAC | 3 cut(s) | 424, 532, 1209 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 261 |
| BsmAI | GTCTC | 1 cut(s) | 1123 |
| BsmBI | CGTCTC | 1 cut(s) | 1123 |
| BsmFI | GGGAC | 3 cut(s) | 424, 532, 1209 |
| BsnI | GGCC | 4 cut(s) | 79, 240, 1047, 1256 |
| BsoBI | CYCGRG | 1 cut(s) | 564 |
| Bsp1407I | TGTACA | 1 cut(s) | 1427 |
| Bsp143I | GATC | 4 cut(s) | 88, 500, 1096, 1289 |
| BspACI | CCGC | 3 cut(s) | 1400, 1402, 1415 |
| BspANI | GGCC | 4 cut(s) | 79, 240, 1047, 1256 |
| BspCNI | CTCAG | 3 cut(s) | 693, 1108, 1165 |
| BspFNI | CGCG | 2 cut(s) | 935, 1402 |
| BspLI | GGNNCC | 3 cut(s) | 1317, 1327, 1419 |
| BspMAI | CTGCAG | 1 cut(s) | 1273 |
| BsrDI | GCAATG | 2 cut(s) | 68, 113 |
| BsrGI | TGTACA | 1 cut(s) | 1427 |
| BsrI | ACTGG | 1 cut(s) | 128 |
| BssECI | CCNNGG | 6 cut(s) | 80, 208, 459, 768, 1257, 1400 |
| BssMI | GATC | 4 cut(s) | 88, 500, 1096, 1289 |
| BssSI | CACGAG | 1 cut(s) | 1041 |
| BssT1I | CCWWGG | 5 cut(s) | 80, 208, 459, 768, 1257 |
| Bst2BI | CACGAG | 1 cut(s) | 1041 |
| Bst2UI | CCWGG | 1 cut(s) | 482 |
| Bst4CI | ACNGT | 5 cut(s) | 96, 525, 991, 1300, 1388 |
| Bst6I | CTCTTC | 4 cut(s) | 50, 153, 891, 940 |
| BstAUI | TGTACA | 1 cut(s) | 1427 |
| BstBAI | YACGTR | 1 cut(s) | 800 |
| BstC8I | GCNNGC | 1 cut(s) | 538 |
| BstDEI | CTNAG | 4 cut(s) | 512, 680, 1116, 1173 |
| BstDSI | CCRYGG | 1 cut(s) | 1400 |
| BstF5I | GGATG | 7 cut(s) | 119, 187, 251, 395, 637, 693, 883 |
| BstFNI | CGCG | 2 cut(s) | 935, 1402 |
| BstHHI | GCGC | 1 cut(s) | 935 |
| BstKTI | GATC | 4 cut(s) | 91, 503, 1099, 1292 |
| BstMAI | GTCTC | 1 cut(s) | 1123 |
| BstMBI | GATC | 4 cut(s) | 88, 500, 1096, 1289 |
| BstMCI | CGRYCG | 1 cut(s) | 503 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1121, 1485 |
| BstNI | CCWGG | 1 cut(s) | 482 |
| BstSCI | CCNGG | 1 cut(s) | 480 |
| BstSFI | CTRYAG | 2 cut(s) | 711, 1269 |
| BstUI | CGCG | 2 cut(s) | 935, 1402 |
| BstV1I | GCAGC | 4 cut(s) | 1108, 1166, 1255, 1488 |
| BstV2I | GAAGAC | 2 cut(s) | 744, 1254 |
| BsuRI | GGCC | 4 cut(s) | 79, 240, 1047, 1256 |
| BtgI | CCRYGG | 1 cut(s) | 1400 |
| BtrI | CACGTC | 1 cut(s) | 623 |
| BtsCI | GGATG | 7 cut(s) | 119, 187, 251, 395, 637, 693, 883 |
| BtsI | GCAGTG | 3 cut(s) | 177, 246, 531 |
| BtsIMutI | CAGTG | 5 cut(s) | 177, 246, 255, 531, 1305 |
| Cac8I | GCNNGC | 1 cut(s) | 538 |
| CaiI | CAGNNNCTG | 2 cut(s) | 134, 1172 |
| CfoI | GCGC | 1 cut(s) | 935 |
| Cfr13I | GGNCC | 3 cut(s) | 744, 1316, 1418 |
| Cfr42I | CCGCGG | 1 cut(s) | 1403 |
| CseI | GACGC | 1 cut(s) | 62 |
| Csp6I | GTAC | 2 cut(s) | 272, 1428 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 343, 378 |
| CviAII | CATG | 2 cut(s) | 443, 552 |
| CviQI | GTAC | 2 cut(s) | 272, 1428 |
| DdeI | CTNAG | 4 cut(s) | 512, 680, 1116, 1173 |
| DpnI | GATC | 4 cut(s) | 90, 502, 1098, 1291 |
| DpnII | GATC | 4 cut(s) | 88, 500, 1096, 1289 |
| DraIII | CACNNNGTG | 1 cut(s) | 803 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 436 |
| DriI | GACNNNNNGTC | 2 cut(s) | 309, 999 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 436 |
| Eam1104I | CTCTTC | 4 cut(s) | 50, 153, 891, 940 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 309, 999 |
| EarI | CTCTTC | 4 cut(s) | 50, 153, 891, 940 |
| Eco130I | CCWWGG | 5 cut(s) | 80, 208, 459, 768, 1257 |
| Eco47I | GGWCC | 3 cut(s) | 744, 1316, 1418 |
| Eco57I | CTGAAG | 3 cut(s) | 279, 975, 1305 |
| Eco72I | CACGTG | 1 cut(s) | 800 |
| Eco88I | CYCGRG | 1 cut(s) | 564 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1316 |
| EcoRI | GAATTC | 1 cut(s) | 791 |
| EcoRII | CCWGG | 1 cut(s) | 480 |
| EcoT14I | CCWWGG | 5 cut(s) | 80, 208, 459, 768, 1257 |
| EcoT22I | ATGCAT | 1 cut(s) | 448 |
| ErhI | CCWWGG | 5 cut(s) | 80, 208, 459, 768, 1257 |
| Esp3I | CGTCTC | 1 cut(s) | 1123 |
| FaeI | CATG | 2 cut(s) | 446, 555 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 252, 284 |
| FaqI | GGGAC | 3 cut(s) | 424, 532, 1209 |
| FatI | CATG | 2 cut(s) | 442, 551 |
| FauI | CCCGC | 2 cut(s) | 1395, 1408 |
| FbaI | TGATCA | 1 cut(s) | 1096 |
| FblI | GTMKAC | 1 cut(s) | 1003 |
| Fnu4HI | GCNGC | 4 cut(s) | 1122, 1155, 1269, 1477 |
| FokI | GGATG | 7 cut(s) | 106, 194, 238, 382, 644, 700, 890 |
| Fsp4HI | GCNGC | 4 cut(s) | 1122, 1155, 1269, 1477 |
| FspBI | CTAG | 6 cut(s) | 276, 920, 942, 1065, 1158, 1206 |
| GlaI | GCGC | 1 cut(s) | 934 |
| GluI | GCNGC | 4 cut(s) | 1122, 1155, 1269, 1477 |
| HaeIII | GGCC | 4 cut(s) | 79, 240, 1047, 1256 |
| HapII | CCGG | 1 cut(s) | 607 |
| HgaI | GACGC | 1 cut(s) | 62 |
| HhaI | GCGC | 1 cut(s) | 935 |
| Hin1II | CATG | 2 cut(s) | 446, 555 |
| Hin6I | GCGC | 1 cut(s) | 933 |
| HinP1I | GCGC | 1 cut(s) | 933 |
| HincII | GTYRAC | 1 cut(s) | 1004 |
| HindII | GTYRAC | 1 cut(s) | 1004 |
| HindIII | AAGCTT | 1 cut(s) | 761 |
| HpaII | CCGG | 1 cut(s) | 607 |
| HphI | GGTGA | 1 cut(s) | 1321 |
| Hpy166II | GTNNAC | 1 cut(s) | 1004 |
| Hpy188III | TCNNGA | 7 cut(s) | 340, 629, 650, 1011, 1183, 1323, 1421 |
| Hpy8I | GTNNAC | 1 cut(s) | 1004 |
| Hpy99I | CGWCG | 5 cut(s) | 78, 315, 624, 1005, 1008 |
| HpyCH4III | ACNGT | 5 cut(s) | 96, 525, 991, 1300, 1388 |
| HpyCH4IV | ACGT | 5 cut(s) | 310, 622, 799, 1006, 1132 |
| HpyCH4V | TGCA | 7 cut(s) | 44, 251, 446, 536, 1141, 1271, 1476 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1121, 1485 |
| HpyF3I | CTNAG | 4 cut(s) | 512, 680, 1116, 1173 |
| HpySE526I | ACGT | 5 cut(s) | 310, 622, 799, 1006, 1132 |
| Hsp92II | CATG | 2 cut(s) | 446, 555 |
| HspAI | GCGC | 1 cut(s) | 933 |
| Ksp22I | TGATCA | 1 cut(s) | 1096 |
| KspI | CCGCGG | 1 cut(s) | 1403 |
| Kzo9I | GATC | 4 cut(s) | 88, 500, 1096, 1289 |
| LmnI | GCTCC | 2 cut(s) | 950, 1063 |
| Lsp1109I | GCAGC | 4 cut(s) | 1108, 1166, 1255, 1488 |
| LweI | GCATC | 6 cut(s) | 260, 404, 445, 455, 850, 1475 |
| MaeI | CTAG | 6 cut(s) | 276, 920, 942, 1065, 1158, 1206 |
| MaeII | ACGT | 5 cut(s) | 310, 622, 799, 1006, 1132 |
| MaeIII | GTNAC | 4 cut(s) | 96, 215, 991, 1333 |
| MalI | GATC | 4 cut(s) | 90, 502, 1098, 1291 |
| MboI | GATC | 4 cut(s) | 88, 500, 1096, 1289 |
| MfeI | CAATTG | 1 cut(s) | 294 |
| MluCI | AATT | 6 cut(s) | 294, 486, 669, 674, 791, 1136 |
| MlyI | GAGTC | 4 cut(s) | 185, 1196, 1268, 1466 |
| MmeI | TCCRAC | 2 cut(s) | 159, 507 |
| Mph1103I | ATGCAT | 1 cut(s) | 448 |
| MroXI | GAANNNNTTC | 2 cut(s) | 264, 669 |
| MseI | TTAA | 2 cut(s) | 348, 975 |
| MspA1I | CMGCKG | 1 cut(s) | 1402 |
| MspI | CCGG | 1 cut(s) | 607 |
| MspR9I | CCNGG | 1 cut(s) | 482 |
| MunI | CAATTG | 1 cut(s) | 294 |
| MvaI | CCWGG | 1 cut(s) | 482 |
| MvnI | CGCG | 2 cut(s) | 935, 1402 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1121, 1485 |
| NdeII | GATC | 4 cut(s) | 88, 500, 1096, 1289 |
| NlaIII | CATG | 2 cut(s) | 446, 555 |
| NlaIV | GGNNCC | 3 cut(s) | 1317, 1327, 1419 |
| NmuCI | GTSAC | 1 cut(s) | 991 |
| NsiI | ATGCAT | 1 cut(s) | 448 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 434 |
| PdmI | GAANNNNTTC | 2 cut(s) | 264, 669 |
| PfeI | GAWTC | 6 cut(s) | 24, 104, 548, 1163, 1189, 1451 |
| PflFI | GACNNNGTC | 1 cut(s) | 433 |
| PkrI | GCNGC | 4 cut(s) | 1123, 1156, 1270, 1478 |
| Ple19I | CGATCG | 1 cut(s) | 503 |
| PleI | GAGTC | 4 cut(s) | 184, 1196, 1268, 1465 |
| PmaCI | CACGTG | 1 cut(s) | 800 |
| PmlI | CACGTG | 1 cut(s) | 800 |
| PpsI | GAGTC | 4 cut(s) | 184, 1196, 1268, 1465 |
| Ppu21I | YACGTR | 1 cut(s) | 800 |
| PpuMI | RGGWCCY | 1 cut(s) | 1316 |
| Psp5II | RGGWCCY | 1 cut(s) | 1316 |
| Psp6I | CCWGG | 1 cut(s) | 480 |
| PspCI | CACGTG | 1 cut(s) | 800 |
| PspGI | CCWGG | 1 cut(s) | 480 |
| PspN4I | GGNNCC | 3 cut(s) | 1317, 1327, 1419 |
| PspPI | GGNCC | 3 cut(s) | 744, 1316, 1418 |
| PspPPI | RGGWCCY | 1 cut(s) | 1316 |
| PstI | CTGCAG | 1 cut(s) | 1273 |
| PstNI | CAGNNNCTG | 2 cut(s) | 134, 1172 |
| PsyI | GACNNNGTC | 1 cut(s) | 433 |
| PvuI | CGATCG | 1 cut(s) | 503 |
| RsaI | GTAC | 2 cut(s) | 273, 1429 |
| RsaNI | GTAC | 2 cut(s) | 272, 1428 |
| SacII | CCGCGG | 1 cut(s) | 1403 |
| SalI | GTCGAC | 1 cut(s) | 1002 |
| SaqAI | TTAA | 2 cut(s) | 348, 975 |
| SatI | GCNGC | 4 cut(s) | 1122, 1155, 1269, 1477 |
| Sau3AI | GATC | 4 cut(s) | 88, 500, 1096, 1289 |
| Sau96I | GGNCC | 3 cut(s) | 744, 1316, 1418 |
| SchI | GAGTC | 4 cut(s) | 185, 1196, 1268, 1466 |
| ScrFI | CCNGG | 1 cut(s) | 482 |
| SfaNI | GCATC | 6 cut(s) | 260, 404, 445, 455, 850, 1475 |
| SfcI | CTRYAG | 2 cut(s) | 711, 1269 |
| Sfr303I | CCGCGG | 1 cut(s) | 1403 |
| SgrBI | CCGCGG | 1 cut(s) | 1403 |
| SgrDI | CGTCGACG | 1 cut(s) | 1002 |
| SinI | GGWCC | 3 cut(s) | 744, 1316, 1418 |
| Sse9I | AATT | 6 cut(s) | 294, 486, 669, 674, 791, 1136 |
| SsiI | CCGC | 3 cut(s) | 1400, 1402, 1415 |
| SspMI | CTAG | 6 cut(s) | 276, 920, 942, 1065, 1158, 1206 |
| StyD4I | CCNGG | 1 cut(s) | 480 |
| StyI | CCWWGG | 5 cut(s) | 80, 208, 459, 768, 1257 |
| TaaI | ACNGT | 5 cut(s) | 96, 525, 991, 1300, 1388 |
| TaiI | ACGT | 5 cut(s) | 313, 625, 802, 1009, 1135 |
| TaqI | TCGA | 9 cut(s) | 91, 313, 428, 503, 642, 1003, 1032, 1146, 1277 |
| TasI | AATT | 6 cut(s) | 294, 486, 669, 674, 791, 1136 |
| TatI | WGTACW | 1 cut(s) | 1427 |
| TfiI | GAWTC | 6 cut(s) | 24, 104, 548, 1163, 1189, 1451 |
| Tru1I | TTAA | 2 cut(s) | 348, 975 |
| Tru9I | TTAA | 2 cut(s) | 348, 975 |
| TscAI | CASTG | 5 cut(s) | 177, 253, 262, 538, 1305 |
| TseFI | GTSAC | 1 cut(s) | 991 |
| TseI | GCWGC | 4 cut(s) | 1121, 1154, 1268, 1476 |
| Tsp45I | GTSAC | 1 cut(s) | 991 |
| TspDTI | ATGAA | 8 cut(s) | 102, 192, 198, 540, 648, 704, 750, 791 |
| TspRI | CASTG | 5 cut(s) | 177, 253, 262, 538, 1305 |
| Tth111I | GACNNNGTC | 1 cut(s) | 433 |
| VpaK11BI | GGWCC | 3 cut(s) | 744, 1316, 1418 |
| XapI | RAATTY | 3 cut(s) | 486, 669, 791 |
| XmiI | GTMKAC | 1 cut(s) | 1003 |
| XmnI | GAANNNNTTC | 2 cut(s) | 264, 669 |
| XspI | CTAG | 6 cut(s) | 276, 920, 942, 1065, 1158, 1206 |
| Zsp2I | ATGCAT | 1 cut(s) | 448 |