RchiOBHm_Chr3g0457151

PAPA-1-like conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005975
Physical Location & Seq
Reverse (-)
6368559 .. 6369087
529 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42391

Sequence Viewer

Length: 222 bp
ATGGGTCCATCAGGATCGATTGTTACTTTTCCTGATACAGTTGGTTTACCAACCATATTTGACCCCAAGCCTTGCAGTTACCCTCCTCCCCGTGAGAAGTGCGCCGGACCATTTTGTACAGACCCATACAAGTACAGGGATTCCCAATCAAAGCTCCCTCTCTGCAGTCTCCAGTGCTGCAAGGCAGTTCACGAAAAGATGCCTTCTCTATCTGCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAPA-1 zf-HIT

Protein Analysis

73

Amino Acids

7.92

Weight (kDa)

8.19

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-HIT PF04438 30 - 61 1.6e-06 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 22
AfaI GTAC 2 cut(s) 118, 134
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 2 cut(s) 5, 107
AvaII GGWCC 2 cut(s) 5, 107
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme18I GGWCC 2 cut(s) 5, 107
BmgT120I GGNCC 2 cut(s) 5, 107
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 17
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 164
BshVI ATCGAT 1 cut(s) 17
BsiSI CCGG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 173
Bsp1407I TGTACA 1 cut(s) 116
Bsp143I GATC 1 cut(s) 14
BspDI ATCGAT 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 167
BspPI GGATC 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 116
BsrI ACTGG 1 cut(s) 172
BssMI GATC 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 40
BstAUI TGTACA 1 cut(s) 116
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 17
BsuTUI ATCGAT 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 179
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 2 cut(s) 5, 107
ClaI ATCGAT 1 cut(s) 17
Csp6I GTAC 2 cut(s) 117, 133
CviJI RGCY 2 cut(s) 70, 154
CviKI_1 RGCY 2 cut(s) 70, 154
CviQI GTAC 2 cut(s) 117, 133
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 5, 107
FaiI YATR 2 cut(s) 56, 127
Fnu4HI GCNGC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 178
GlaI GCGC 1 cut(s) 103
GluI GCNGC 1 cut(s) 178
GsuI CTGGAG 1 cut(s) 155
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 104
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 47, 190
Hpy188III TCNNGA 3 cut(s) 12, 32, 191
Hpy8I GTNNAC 2 cut(s) 47, 190
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 75, 165, 180
HspAI GCGC 1 cut(s) 102
Kzo9I GATC 1 cut(s) 14
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 4 cut(s) 45, 118, 121, 185
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 22, 77
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MnlI CCTC 3 cut(s) 93, 96, 168
MseI TTAA 1 cut(s) 220
MspI CCGG 1 cut(s) 105
NdeII GATC 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 5, 107
PstI CTGCAG 1 cut(s) 167
RsaI GTAC 2 cut(s) 118, 134
RsaNI GTAC 2 cut(s) 117, 133
SaqAI TTAA 1 cut(s) 220
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 2 cut(s) 5, 107
SetI ASST 1 cut(s) 156
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 2 cut(s) 5, 107
TaaI ACNGT 1 cut(s) 40
TaqI TCGA 1 cut(s) 17
TatI WGTACW 2 cut(s) 116, 132
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 220
Tru9I TTAA 1 cut(s) 220
TscAI CASTG 1 cut(s) 179
TseI GCWGC 1 cut(s) 177
TspRI CASTG 1 cut(s) 179
VpaK11BI GGWCC 2 cut(s) 5, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.