Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005975

Physical Location & Seq

Genomic Coordinates Forward (+)

29799574 .. 29802483

Gene Structure 2910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1214800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGGGTTTTGGAGGTTTGGGATTCAGTGATGTAAGCAGTGCTGTGAGAAGGAAAAGGAGTAACACATCTCGTCGTCCTCGGAATGAGTCACAGCTACCTTTGGATTGTCGTGATAATGTGTCATCAACTCCTTCAGAAGATGTAAGCAAAAGTGATGAGAATAACAATGGCGGTTCAATTACTCAAAAGAAAGATATTGATTTGAACTTATGCAGCGCAAGGGCTTCATTTAGTAACATTTTGGAGGCTGAGACTGTCCAGAATATGGATAACGGTGAGGGGGGAGGATCCGGAGAATCTGATGAATCTTCAAATGATGGTTCTTTTCGAGGCAGTGACGAGCATAGGCATAGGGGGATTGAATCCAAAAGGTCCAGCAAGGGTGCCCTTGCCCCGGCTAATTGGAAAAAGCTCCAACAACGTTGGGCCTTTTGGAGTTTTGGTGGTGTTACACGCACAATTCAGGCCAAGTCTTCATCTGATGGTGCATCTGCTGTTGGGCCATCTTCTGTAAAATCATCTCGCATTTCAGATACCCCTCGACCACGGCAGAAGTTGATTCTTCAGGAAGACTCAGATGACAATCCTTCCCTTAGTTCCGATAAAGAAAGTGGGTTACGAGGAGTCCCACAGAAGGATACATCTAAAAGTGTTGCTCATGTTGGGAAAGTTGAAGAACTTGTTCGCAAGAGTAAACGGGTCCCTAAGAGACGCTTCCTGGATGCAGTTGATGATGATGACATGGAAGTTCGATACCTTGAAAAACTCAAAACATCTAAGGTCACCTCAGATTATACTGCAGAGTACAATGAGGATGAGGAAAGGAAAACCAGAAAAGAAAGGAAGATTTCAACAGTGATGAAGGGGAGTGGTATTGGACCAAGTGTAGATTTGGCAGATTATGGCATACCAAGATCGGGCAAGGACGGTAAGAAGTTCAGAGTAGGAAGCGTTTCTGATGTTACTGATTATGTTGAAGAGGAAGAAGAACCTGTTTCCGATGGCGAGCCTAATACTAAAATGAAAAAAGTGAGAAAGGAGTTTGTTGAATCATCCTCATATAATAAGGAGATGACAGTCACTACTCGTCAAAGGGCTCTTAAAACTGGCAAAGACAGAATATATGGAGTGCAAGTTCAGTGCAAATGGAGGCCAAAACGAGTTAGGGGTGAGGATCGGAGATCAAGAAATACCAAAGAGCGACCGTTTTCGTTACCTAGGATCTATCTTGCAAAAGAACGGAGAATTAGATGGAGATCTCAACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAPA-1 zf-HIT

Protein Analysis

424

Amino Acids

47.43

Weight (kDa)

9.56

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56460 AT1G56460 AT1G56460
fragaria_vesca	FvH4_6g07480 FvH4_6g07480 FvH4_6g07480 FvH4_6g07480
malus_domestica	MD00G1208200.v1.1 MD04G1214800.v1.1 MD04G1215000.v1.1 MD12G1205400.v1.1
prunus_persica	Prupe.6G312500_v2.0.a1
pyrus_communis	pycom12g19330
rosa_chinensis	RchiOBHm_Chr3g0457151 RchiOBHm_Chr3g0457181
rosa_laevigata	RLG00000025244
rosa_multiflora	Rmu_sc0000488.1_g000012
rosa_roxburghii	Rroxscaffold_6G00422130
rosa_rugosa	Rorug03G0019200 Rorug03G0019300 Rorug03G0019300 Rorug03G0019400
rosa_samantha	Rh3AG079100 Rh3BG080800 Rh3CG080900 Rh3DG082800
rosa_wichuraiana	Rw3G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	1 cut(s)	174
AclI	AACGTT	1 cut(s)	424
AclWI	GGATC	4 cut(s)	285, 298, 1185, 1232
AcuI	CTGAAG	2 cut(s)	120, 551
AfaI	GTAC	1 cut(s)	809
AfiI	CCNNNNNNNGG	4 cut(s)	268, 397, 637, 920
AgsI	TTSAA	9 cut(s)	180, 208, 315, 365, 677, 764, 855, 980, 1052
AjnI	CCWGG	1 cut(s)	720
AloI	GAACNNNNNNTCC	2 cut(s)	1122, 1154
AluBI	AGCT	2 cut(s)	97, 415
AluI	AGCT	2 cut(s)	97, 415
Alw26I	GTCTC	2 cut(s)	248, 706
AlwI	GGATC	4 cut(s)	285, 298, 1185, 1232
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	4 cut(s)	429, 468, 503, 1154
ApeKI	GCWGC	1 cut(s)	216
Asp700I	GAANNNNTTC	2 cut(s)	684, 955
AspA2I	CCTAGG	1 cut(s)	1220
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	5 cut(s)	375, 429, 503, 703, 881
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	290, 778, 1184
AvaII	GGWCC	3 cut(s)	375, 703, 881
AvrII	CCTAGG	1 cut(s)	1220
BaeGI	GKGCMC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	1102
BbsI	GAAGAC	2 cut(s)	468, 579
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	5 cut(s)	314, 479, 514, 998, 1248
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	722
BciVI	GTATCC	1 cut(s)	634
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	248, 706
BfaI	CTAG	1 cut(s)	1221
BfmI	CTRYAG	1 cut(s)	801
BfuI	GTATCC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	1259
BisI	GCNGC	1 cut(s)	217
BlnI	CCTAGG	1 cut(s)	1220
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	398, 722
Bme18I	GGWCC	3 cut(s)	375, 703, 881
BmgT120I	GGNCC	5 cut(s)	375, 429, 503, 703, 881
BmiI	GGNNCC	4 cut(s)	292, 388, 704, 705
BmrFI	CCNGG	2 cut(s)	398, 722
BmsI	GCATC	2 cut(s)	500, 715
BpiI	GAAGAC	2 cut(s)	468, 579
BpuMI	CCSGG	1 cut(s)	398
BsaBI	GATNNNNATC	2 cut(s)	585, 1258
BsaJI	CCNNGG	4 cut(s)	80, 396, 548, 1220
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	4 cut(s)	430, 460, 1122, 1152
Bsc4I	CCNNNNNNNGG	4 cut(s)	268, 397, 637, 920
Bse1I	ACTGG	1 cut(s)	1114
Bse8I	GATNNNNATC	2 cut(s)	585, 1258
BseAI	TCCGGA	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	4 cut(s)	80, 396, 548, 1220
BseGI	GGATG	3 cut(s)	730, 823, 1055
BseJI	GATNNNNATC	2 cut(s)	585, 1258
BseLI	CCNNNNNNNGG	4 cut(s)	268, 397, 637, 920
BseMII	CTCAG	3 cut(s)	243, 591, 804
BseNI	ACTGG	1 cut(s)	1114
BseRI	GAGGAG	1 cut(s)	639
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	1208
BshFI	GGCC	4 cut(s)	431, 470, 505, 1156
BshNI	GGYRCC	1 cut(s)	386
BsiEI	CGRYCG	1 cut(s)	1208
BsiSI	CCGG	2 cut(s)	294, 398
BslFI	GGGAC	2 cut(s)	614, 689
BslI	CCNNNNNNNGG	4 cut(s)	268, 397, 637, 920
BsmAI	GTCTC	2 cut(s)	248, 706
BsmBI	CGTCTC	1 cut(s)	706
BsmFI	GGGAC	2 cut(s)	614, 689
BsnI	GGCC	4 cut(s)	431, 470, 505, 1156
Bsp1286I	GDGCHC	2 cut(s)	391, 1102
Bsp13I	TCCGGA	1 cut(s)	293
Bsp143I	GATC	6 cut(s)	290, 917, 1177, 1184, 1224, 1259
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	4 cut(s)	431, 470, 505, 1156
BspCNI	CTCAG	3 cut(s)	244, 590, 803
BspEI	TCCGGA	1 cut(s)	293
BspLI	GGNNCC	4 cut(s)	292, 388, 704, 705
BspMAI	CTGCAG	1 cut(s)	805
BspPI	GGATC	4 cut(s)	285, 298, 1185, 1232
BspT107I	GGYRCC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	1114
BssECI	CCNNGG	4 cut(s)	80, 396, 548, 1220
BssMI	GATC	6 cut(s)	290, 917, 1177, 1184, 1224, 1259
BssT1I	CCWWGG	1 cut(s)	1220
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	6 cut(s)	259, 278, 859, 932, 1081, 1209
Bst6I	CTCTTC	1 cut(s)	975
BstC8I	GCNNGC	1 cut(s)	1010
BstDEI	CTNAG	6 cut(s)	252, 577, 596, 708, 780, 790
BstDSI	CCRYGG	1 cut(s)	548
BstEII	GGTNACC	1 cut(s)	784
BstF5I	GGATG	3 cut(s)	730, 823, 1055
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	6 cut(s)	293, 920, 1180, 1187, 1227, 1262
BstMAI	GTCTC	2 cut(s)	248, 706
BstMBI	GATC	6 cut(s)	290, 917, 1177, 1184, 1224, 1259
BstMCI	CGRYCG	1 cut(s)	1208
BstNI	CCWGG	1 cut(s)	722
BstPI	GGTNACC	1 cut(s)	784
BstSCI	CCNGG	2 cut(s)	396, 720
BstSFI	CTRYAG	1 cut(s)	801
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	228
BstV2I	GAAGAC	2 cut(s)	468, 579
BstX2I	RGATCY	3 cut(s)	290, 1224, 1259
BstYI	RGATCY	3 cut(s)	290, 1224, 1259
BsuI	GTATCC	1 cut(s)	634
BsuRI	GGCC	4 cut(s)	431, 470, 505, 1156
BtgI	CCRYGG	1 cut(s)	548
BtsCI	GGATG	3 cut(s)	730, 823, 1055
BtsI	GCAGTG	2 cut(s)	46, 343
BtsIMutI	CAGTG	5 cut(s)	34, 46, 343, 864, 1148
Cac8I	GCNNGC	1 cut(s)	1010
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	5 cut(s)	375, 429, 503, 703, 881
CseI	GACGC	1 cut(s)	723
Csp6I	GTAC	1 cut(s)	808
CviAII	CATG	2 cut(s)	662, 745
CviQI	GTAC	1 cut(s)	808
DdeI	CTNAG	6 cut(s)	252, 577, 596, 708, 780, 790
DpnI	GATC	6 cut(s)	292, 919, 1179, 1186, 1226, 1261
DpnII	GATC	6 cut(s)	290, 917, 1177, 1184, 1224, 1259
Eam1104I	CTCTTC	1 cut(s)	975
EarI	CTCTTC	1 cut(s)	975
Eco130I	CCWWGG	1 cut(s)	1220
Eco24I	GRGCYC	1 cut(s)	1102
Eco47I	GGWCC	3 cut(s)	375, 703, 881
Eco57I	CTGAAG	2 cut(s)	120, 551
Eco91I	GGTNACC	1 cut(s)	784
EcoO109I	RGGNCCY	1 cut(s)	703
EcoO65I	GGTNACC	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	1220
EcoT38I	GRGCYC	1 cut(s)	1102
ErhI	CCWWGG	1 cut(s)	1220
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	2 cut(s)	665, 748
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	2 cut(s)	614, 689
FatI	CATG	2 cut(s)	661, 744
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	3 cut(s)	737, 830, 1042
FriOI	GRGCYC	1 cut(s)	1102
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	1221
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	217
HaeIII	GGCC	4 cut(s)	431, 470, 505, 1156
HapII	CCGG	2 cut(s)	294, 398
HgaI	GACGC	1 cut(s)	723
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	665, 748
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	9 cut(s)	24, 89, 299, 308, 365, 562, 575, 627, 1052
HpaII	CCGG	2 cut(s)	294, 398
HphI	GGTGA	3 cut(s)	290, 778, 1184
Hpy166II	GTNNAC	1 cut(s)	698
Hpy188III	TCNNGA	5 cut(s)	113, 262, 294, 569, 1188
Hpy8I	GTNNAC	1 cut(s)	698
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	5 cut(s)	45, 144, 600, 631, 859
HpyCH4III	ACNGT	6 cut(s)	259, 278, 859, 932, 1081, 1209
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	7 cut(s)	216, 491, 728, 803, 1135, 1146, 1235
HpyF3I	CTNAG	6 cut(s)	252, 577, 596, 708, 780, 790
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	2 cut(s)	665, 748
HspAI	GCGC	1 cut(s)	219
KflI	GGGWCCC	1 cut(s)	703
Kpn2I	TCCGGA	1 cut(s)	293
Kzo9I	GATC	6 cut(s)	290, 917, 1177, 1184, 1224, 1259
LmnI	GCTCC	1 cut(s)	420
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	2 cut(s)	500, 715
MaeI	CTAG	1 cut(s)	1221
MaeII	ACGT	1 cut(s)	424
MalI	GATC	6 cut(s)	292, 919, 1179, 1186, 1226, 1261
MboI	GATC	6 cut(s)	290, 917, 1177, 1184, 1224, 1259
MflI	RGATCY	3 cut(s)	290, 1224, 1259
MhlI	GDGCHC	2 cut(s)	391, 1102
MluCI	AATT	4 cut(s)	180, 403, 462, 1248
MlyI	GAGTC	3 cut(s)	98, 569, 636
MmeI	TCCRAC	1 cut(s)	442
MroI	TCCGGA	1 cut(s)	293
MroXI	GAANNNNTTC	2 cut(s)	684, 955
MseI	TTAA	1 cut(s)	1104
MspI	CCGG	2 cut(s)	294, 398
MspR9I	CCNGG	2 cut(s)	398, 722
MvaI	CCWGG	1 cut(s)	722
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	6 cut(s)	290, 917, 1177, 1184, 1224, 1259
NlaIII	CATG	2 cut(s)	665, 748
NlaIV	GGNNCC	4 cut(s)	292, 388, 704, 705
NmuCI	GTSAC	4 cut(s)	90, 338, 784, 1081
PdmI	GAANNNNTTC	2 cut(s)	684, 955
PfeI	GAWTC	6 cut(s)	24, 299, 308, 365, 562, 1052
PflMI	CCANNNNNTGG	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	720
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	3 cut(s)	97, 569, 635
PpsI	GAGTC	3 cut(s)	97, 569, 635
PpuMI	RGGWCCY	1 cut(s)	703
Psp1406I	AACGTT	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	703
Psp6I	CCWGG	1 cut(s)	720
PspEI	GGTNACC	1 cut(s)	784
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	4 cut(s)	292, 388, 704, 705
PspPI	GGNCC	5 cut(s)	375, 429, 503, 703, 881
PspPPI	RGGWCCY	1 cut(s)	703
PstI	CTGCAG	1 cut(s)	805
PsuI	RGATCY	3 cut(s)	290, 1224, 1259
RsaI	GTAC	1 cut(s)	809
RsaNI	GTAC	1 cut(s)	808
SaqAI	TTAA	1 cut(s)	1104
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	6 cut(s)	290, 917, 1177, 1184, 1224, 1259
Sau96I	GGNCC	5 cut(s)	375, 429, 503, 703, 881
SchI	GAGTC	3 cut(s)	98, 569, 636
ScrFI	CCNGG	2 cut(s)	398, 722
SduI	GDGCHC	2 cut(s)	391, 1102
SfaNI	GCATC	2 cut(s)	500, 715
SfcI	CTRYAG	1 cut(s)	801
SinI	GGWCC	3 cut(s)	375, 703, 881
Sse9I	AATT	4 cut(s)	180, 403, 462, 1248
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	1 cut(s)	1221
StyD4I	CCNGG	2 cut(s)	396, 720
StyI	CCWWGG	1 cut(s)	1220
TaaI	ACNGT	6 cut(s)	259, 278, 859, 932, 1081, 1209
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	331, 544, 754
TasI	AATT	4 cut(s)	180, 403, 462, 1248
TatI	WGTACW	1 cut(s)	807
TfiI	GAWTC	6 cut(s)	24, 299, 308, 365, 562, 1052
Tru1I	TTAA	1 cut(s)	1104
Tru9I	TTAA	1 cut(s)	1104
TscAI	CASTG	5 cut(s)	34, 46, 343, 864, 1148
TseFI	GTSAC	4 cut(s)	90, 338, 784, 1081
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	4 cut(s)	90, 338, 784, 1081
TspDTI	ATGAA	5 cut(s)	219, 321, 468, 878, 1040
TspGWI	ACGGA	1 cut(s)	1258
TspRI	CASTG	5 cut(s)	34, 46, 343, 864, 1148
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	3 cut(s)	375, 703, 881
XmaJI	CCTAGG	1 cut(s)	1220
XmnI	GAANNNNTTC	2 cut(s)	684, 955
XspI	CTAG	1 cut(s)	1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.