PAPA-1-like conserved region
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56460 AT1G56460 AT1G56460 |
| fragaria_vesca | FvH4_6g07480 FvH4_6g07480 FvH4_6g07480 FvH4_6g07480 |
| malus_domestica | MD00G1208200.v1.1 MD04G1214800.v1.1 MD04G1215000.v1.1 MD12G1205400.v1.1 |
| prunus_persica | Prupe.6G312500_v2.0.a1 |
| pyrus_communis | pycom12g19330 |
| rosa_chinensis | RchiOBHm_Chr3g0457151 RchiOBHm_Chr3g0457181 |
| rosa_laevigata | RLG00000025244 |
| rosa_multiflora | Rmu_sc0000488.1_g000012 |
| rosa_roxburghii | Rroxscaffold_6G00422130 |
| rosa_rugosa | Rorug03G0019200 Rorug03G0019300 Rorug03G0019300 Rorug03G0019400 |
| rosa_samantha | Rh3AG079100 Rh3BG080800 Rh3CG080900 Rh3DG082800 |
| rosa_wichuraiana | Rw3G006800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 416 |
| AciI | CCGC | 1 cut(s) | 15 |
| AclWI | GGATC | 2 cut(s) | 588, 1429 |
| AcoI | YGGCCR | 1 cut(s) | 859 |
| AcsI | RAATTY | 3 cut(s) | 514, 1181, 1287 |
| AcuI | CTGAAG | 4 cut(s) | 129, 491, 660, 1226 |
| AfaI | GTAC | 3 cut(s) | 358, 1525, 1541 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 310 |
| AflII | CTTAAG | 1 cut(s) | 377 |
| AflIII | ACRYGT | 1 cut(s) | 679 |
| AgsI | TTSAA | 7 cut(s) | 188, 204, 624, 743, 834, 844, 1088 |
| AjiI | CACGTC | 1 cut(s) | 680 |
| AluBI | AGCT | 6 cut(s) | 97, 200, 376, 1256, 1367, 1561 |
| AluI | AGCT | 6 cut(s) | 97, 200, 376, 1256, 1367, 1561 |
| Alw26I | GTCTC | 4 cut(s) | 670, 1108, 1222, 1580 |
| AlwI | GGATC | 2 cut(s) | 588, 1429 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1204, 1394 |
| AoxI | GGCC | 6 cut(s) | 283, 301, 408, 859, 1080, 1294 |
| ApaI | GGGCCC | 1 cut(s) | 1084 |
| ApeKI | GCWGC | 5 cut(s) | 44, 1198, 1220, 1253, 1367 |
| ApoI | RAATTY | 3 cut(s) | 514, 1181, 1287 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 648 |
| AspLEI | GCGC | 2 cut(s) | 1127, 1511 |
| AspS9I | GGNCC | 7 cut(s) | 284, 302, 1080, 1081, 1294, 1412, 1514 |
| AsuHPI | GGTGA | 1 cut(s) | 1417 |
| AvaII | GGWCC | 2 cut(s) | 1412, 1514 |
| BaeGI | GKGCMC | 1 cut(s) | 1084 |
| BalI | TGGCCA | 1 cut(s) | 861 |
| BanII | GRGCYC | 1 cut(s) | 1084 |
| BbsI | GAAGAC | 3 cut(s) | 441, 972, 1329 |
| BbvCI | CCTCAGC | 1 cut(s) | 1272 |
| BbvI | GCAGC | 5 cut(s) | 31, 1207, 1210, 1265, 1354 |
| BccI | CCATC | 8 cut(s) | 308, 419, 683, 977, 1393, 1395, 1402, 1423 |
| BceAI | ACGGC | 1 cut(s) | 1355 |
| BciVI | GTATCC | 1 cut(s) | 173 |
| BcoDI | GTCTC | 4 cut(s) | 670, 1108, 1222, 1580 |
| BfaI | CTAG | 2 cut(s) | 1092, 1257 |
| BfmI | CTRYAG | 1 cut(s) | 1570 |
| BfrI | CTTAAG | 1 cut(s) | 377 |
| BfuI | GTATCC | 1 cut(s) | 173 |
| BglII | AGATCT | 1 cut(s) | 1348 |
| BisI | GCNGC | 6 cut(s) | 16, 45, 1199, 1221, 1254, 1368 |
| BlsI | GCNGC | 6 cut(s) | 17, 46, 1200, 1222, 1255, 1369 |
| BmcAI | AGTACT | 1 cut(s) | 358 |
| Bme18I | GGWCC | 2 cut(s) | 1412, 1514 |
| BmgBI | CACGTC | 1 cut(s) | 680 |
| BmgT120I | GGNCC | 7 cut(s) | 284, 302, 1080, 1081, 1294, 1412, 1514 |
| BmiI | GGNNCC | 4 cut(s) | 304, 532, 1082, 1413 |
| BmrI | ACTGGG | 1 cut(s) | 255 |
| BmsI | GCATC | 7 cut(s) | 440, 466, 581, 624, 675, 1227, 1596 |
| BmuI | ACTGGG | 1 cut(s) | 255 |
| BpiI | GAAGAC | 3 cut(s) | 441, 972, 1329 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1025, 1057 |
| BpmI | CTGGAG | 1 cut(s) | 1562 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1272 |
| BpuEI | CTTGAG | 1 cut(s) | 983 |
| Bsa29I | ATCGAT | 1 cut(s) | 1424 |
| BsaJI | CCNNGG | 3 cut(s) | 80, 280, 488 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 168, 198 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 310 |
| Bse1I | ACTGG | 4 cut(s) | 250, 862, 1305, 1579 |
| BseCI | ATCGAT | 1 cut(s) | 1424 |
| BseDI | CCNNGG | 3 cut(s) | 80, 280, 488 |
| BseGI | GGATG | 8 cut(s) | 319, 619, 639, 666, 694, 802, 1037, 1242 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 310 |
| BseMII | CTCAG | 5 cut(s) | 159, 1056, 1238, 1257, 1263 |
| BseNI | ACTGG | 4 cut(s) | 250, 862, 1305, 1579 |
| BseRI | GAGGAG | 3 cut(s) | 129, 189, 1482 |
| BseSI | GKGCMC | 1 cut(s) | 1084 |
| BseXI | GCAGC | 5 cut(s) | 31, 1207, 1210, 1265, 1354 |
| BseYI | CCCAGC | 1 cut(s) | 305 |
| BsgI | GTGCAG | 3 cut(s) | 886, 1140, 1209 |
| BshFI | GGCC | 6 cut(s) | 285, 303, 410, 861, 1082, 1296 |
| BshVI | ATCGAT | 1 cut(s) | 1424 |
| BsiSI | CCGG | 1 cut(s) | 1512 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 310 |
| BsmAI | GTCTC | 4 cut(s) | 670, 1108, 1222, 1580 |
| BsmBI | CGTCTC | 2 cut(s) | 670, 1222 |
| BsnI | GGCC | 6 cut(s) | 285, 303, 410, 861, 1082, 1296 |
| Bsp120I | GGGCCC | 1 cut(s) | 1080 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1084 |
| Bsp1407I | TGTACA | 1 cut(s) | 1523 |
| Bsp143I | GATC | 6 cut(s) | 580, 601, 926, 1002, 1348, 1421 |
| BspACI | CCGC | 1 cut(s) | 15 |
| BspANI | GGCC | 6 cut(s) | 285, 303, 410, 861, 1082, 1296 |
| BspCNI | CTCAG | 5 cut(s) | 160, 1055, 1237, 1258, 1264 |
| BspDI | ATCGAT | 1 cut(s) | 1424 |
| BspLI | GGNNCC | 4 cut(s) | 304, 532, 1082, 1413 |
| BspMAI | CTGCAG | 1 cut(s) | 1574 |
| BspPI | GGATC | 2 cut(s) | 588, 1429 |
| BspTI | CTTAAG | 1 cut(s) | 377 |
| BsrGI | TGTACA | 1 cut(s) | 1523 |
| BsrI | ACTGG | 4 cut(s) | 250, 862, 1305, 1579 |
| BssECI | CCNNGG | 3 cut(s) | 80, 280, 488 |
| BssMI | GATC | 6 cut(s) | 580, 601, 926, 1002, 1348, 1421 |
| BssT1I | CCWWGG | 1 cut(s) | 280 |
| Bst4CI | ACNGT | 7 cut(s) | 41, 129, 361, 697, 779, 1063, 1447 |
| Bst6I | CTCTTC | 4 cut(s) | 127, 488, 928, 1111 |
| BstAFI | CTTAAG | 1 cut(s) | 377 |
| BstAUI | TGTACA | 1 cut(s) | 1523 |
| BstC8I | GCNNGC | 1 cut(s) | 989 |
| BstDEI | CTNAG | 8 cut(s) | 168, 576, 672, 759, 1042, 1224, 1266, 1272 |
| BstDSI | CCRYGG | 1 cut(s) | 488 |
| BstF5I | GGATG | 8 cut(s) | 319, 619, 639, 666, 694, 802, 1037, 1242 |
| BstHHI | GCGC | 2 cut(s) | 1127, 1511 |
| BstKTI | GATC | 6 cut(s) | 583, 604, 929, 1005, 1351, 1424 |
| BstMAI | GTCTC | 4 cut(s) | 670, 1108, 1222, 1580 |
| BstMBI | GATC | 6 cut(s) | 580, 601, 926, 1002, 1348, 1421 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1373 |
| BstSFI | CTRYAG | 1 cut(s) | 1570 |
| BstSLI | GKGCMC | 1 cut(s) | 1084 |
| BstV1I | GCAGC | 5 cut(s) | 31, 1207, 1210, 1265, 1354 |
| BstV2I | GAAGAC | 3 cut(s) | 441, 972, 1329 |
| BstX2I | RGATCY | 2 cut(s) | 580, 1348 |
| BstYI | RGATCY | 2 cut(s) | 580, 1348 |
| Bsu15I | ATCGAT | 1 cut(s) | 1424 |
| BsuI | GTATCC | 1 cut(s) | 173 |
| BsuRI | GGCC | 6 cut(s) | 285, 303, 410, 861, 1082, 1296 |
| BsuTUI | ATCGAT | 1 cut(s) | 1424 |
| BtgI | CCRYGG | 1 cut(s) | 488 |
| BtgZI | GCGATG | 1 cut(s) | 723 |
| BtrI | CACGTC | 1 cut(s) | 680 |
| BtsCI | GGATG | 8 cut(s) | 319, 619, 639, 666, 694, 802, 1037, 1242 |
| BtsI | GCAGTG | 2 cut(s) | 874, 1197 |
| BtsIMutI | CAGTG | 7 cut(s) | 34, 46, 125, 869, 874, 1197, 1586 |
| Cac8I | GCNNGC | 1 cut(s) | 989 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1204, 1394 |
| CfoI | GCGC | 2 cut(s) | 1127, 1511 |
| Cfr13I | GGNCC | 7 cut(s) | 284, 302, 1080, 1081, 1294, 1412, 1514 |
| ClaI | ATCGAT | 1 cut(s) | 1424 |
| Csp6I | GTAC | 3 cut(s) | 357, 1524, 1540 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 535, 570 |
| CviAII | CATG | 1 cut(s) | 271 |
| CviQI | GTAC | 3 cut(s) | 357, 1524, 1540 |
| DdeI | CTNAG | 8 cut(s) | 168, 576, 672, 759, 1042, 1224, 1266, 1272 |
| DpnI | GATC | 6 cut(s) | 582, 603, 928, 1004, 1350, 1423 |
| DpnII | GATC | 6 cut(s) | 580, 601, 926, 1002, 1348, 1421 |
| EaeI | YGGCCR | 1 cut(s) | 859 |
| Eam1104I | CTCTTC | 4 cut(s) | 127, 488, 928, 1111 |
| EarI | CTCTTC | 4 cut(s) | 127, 488, 928, 1111 |
| Eco130I | CCWWGG | 1 cut(s) | 280 |
| Eco24I | GRGCYC | 1 cut(s) | 1084 |
| Eco47I | GGWCC | 2 cut(s) | 1412, 1514 |
| Eco57I | CTGAAG | 4 cut(s) | 129, 491, 660, 1226 |
| EcoO109I | RGGNCCY | 3 cut(s) | 302, 1080, 1081 |
| EcoRI | GAATTC | 1 cut(s) | 1181 |
| EcoT14I | CCWWGG | 1 cut(s) | 280 |
| EcoT38I | GRGCYC | 1 cut(s) | 1084 |
| ErhI | CCWWGG | 1 cut(s) | 280 |
| Esp3I | CGTCTC | 2 cut(s) | 670, 1222 |
| FaeI | CATG | 1 cut(s) | 274 |
| FatI | CATG | 1 cut(s) | 270 |
| FblI | GTMKAC | 1 cut(s) | 416 |
| Fnu4HI | GCNGC | 6 cut(s) | 16, 45, 1199, 1221, 1254, 1368 |
| FokI | GGATG | 8 cut(s) | 326, 626, 646, 653, 701, 809, 1024, 1249 |
| FriOI | GRGCYC | 1 cut(s) | 1084 |
| Fsp4HI | GCNGC | 6 cut(s) | 16, 45, 1199, 1221, 1254, 1368 |
| FspBI | CTAG | 2 cut(s) | 1092, 1257 |
| GlaI | GCGC | 2 cut(s) | 1126, 1510 |
| GluI | GCNGC | 6 cut(s) | 16, 45, 1199, 1221, 1254, 1368 |
| GsaI | CCCAGC | 1 cut(s) | 309 |
| GsuI | CTGGAG | 1 cut(s) | 1562 |
| HaeIII | GGCC | 6 cut(s) | 285, 303, 410, 861, 1082, 1296 |
| HapII | CCGG | 1 cut(s) | 1512 |
| HhaI | GCGC | 2 cut(s) | 1127, 1511 |
| Hin1II | CATG | 1 cut(s) | 274 |
| Hin6I | GCGC | 2 cut(s) | 1125, 1509 |
| HinP1I | GCGC | 2 cut(s) | 1125, 1509 |
| HindIII | AAGCTT | 2 cut(s) | 198, 374 |
| HpaII | CCGG | 1 cut(s) | 1512 |
| HphI | GGTGA | 1 cut(s) | 1417 |
| Hpy166II | GTNNAC | 4 cut(s) | 37, 417, 1454, 1597 |
| Hpy8I | GTNNAC | 4 cut(s) | 37, 417, 1454, 1597 |
| Hpy99I | CGWCG | 2 cut(s) | 78, 1077 |
| HpyAV | CCTTC | 7 cut(s) | 153, 604, 838, 1071, 1094, 1243, 1620 |
| HpyCH4III | ACNGT | 7 cut(s) | 41, 129, 361, 697, 779, 1063, 1447 |
| HpyCH4IV | ACGT | 3 cut(s) | 183, 679, 1231 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1373 |
| HpyF3I | CTNAG | 8 cut(s) | 168, 576, 672, 759, 1042, 1224, 1266, 1272 |
| HpySE526I | ACGT | 3 cut(s) | 183, 679, 1231 |
| Hsp92II | CATG | 1 cut(s) | 274 |
| HspAI | GCGC | 2 cut(s) | 1125, 1509 |
| Kzo9I | GATC | 6 cut(s) | 580, 601, 926, 1002, 1348, 1421 |
| LmnI | GCTCC | 3 cut(s) | 60, 1195, 1566 |
| Lsp1109I | GCAGC | 5 cut(s) | 31, 1207, 1210, 1265, 1354 |
| LweI | GCATC | 7 cut(s) | 440, 466, 581, 624, 675, 1227, 1596 |
| MaeI | CTAG | 2 cut(s) | 1092, 1257 |
| MaeII | ACGT | 3 cut(s) | 183, 679, 1231 |
| MaeIII | GTNAC | 7 cut(s) | 90, 113, 391, 558, 1063, 1429, 1484 |
| MalI | GATC | 6 cut(s) | 582, 603, 928, 1004, 1350, 1423 |
| MboI | GATC | 6 cut(s) | 580, 601, 926, 1002, 1348, 1421 |
| MfeI | CAATTG | 1 cut(s) | 1128 |
| MflI | RGATCY | 2 cut(s) | 580, 1348 |
| MhlI | GDGCHC | 1 cut(s) | 1084 |
| MlsI | TGGCCA | 1 cut(s) | 861 |
| MluCI | AATT | 7 cut(s) | 340, 402, 514, 1013, 1128, 1181, 1287 |
| MluNI | TGGCCA | 1 cut(s) | 861 |
| MlyI | GAGTC | 2 cut(s) | 98, 1043 |
| MmeI | TCCRAC | 1 cut(s) | 1289 |
| Mox20I | TGGCCA | 1 cut(s) | 861 |
| MroXI | GAANNNNTTC | 1 cut(s) | 648 |
| MscI | TGGCCA | 1 cut(s) | 861 |
| MseI | TTAA | 5 cut(s) | 162, 372, 378, 384, 1627 |
| Msp20I | TGGCCA | 1 cut(s) | 861 |
| MspA1I | CMGCKG | 1 cut(s) | 15 |
| MspCI | CTTAAG | 1 cut(s) | 377 |
| MspI | CCGG | 1 cut(s) | 1512 |
| MunI | CAATTG | 1 cut(s) | 1128 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1373 |
| NdeII | GATC | 6 cut(s) | 580, 601, 926, 1002, 1348, 1421 |
| NlaIII | CATG | 1 cut(s) | 274 |
| NlaIV | GGNNCC | 4 cut(s) | 304, 532, 1082, 1413 |
| NmuCI | GTSAC | 2 cut(s) | 90, 113 |
| PdmI | GAANNNNTTC | 1 cut(s) | 648 |
| PfeI | GAWTC | 8 cut(s) | 24, 188, 254, 502, 1262, 1301, 1391, 1547 |
| PkrI | GCNGC | 6 cut(s) | 17, 46, 1200, 1222, 1255, 1369 |
| PleI | GAGTC | 2 cut(s) | 97, 1042 |
| PpsI | GAGTC | 2 cut(s) | 97, 1042 |
| PspFI | CCCAGC | 1 cut(s) | 305 |
| PspN4I | GGNNCC | 4 cut(s) | 304, 532, 1082, 1413 |
| PspOMI | GGGCCC | 1 cut(s) | 1080 |
| PspPI | GGNCC | 7 cut(s) | 284, 302, 1080, 1081, 1294, 1412, 1514 |
| PstI | CTGCAG | 1 cut(s) | 1574 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1204, 1394 |
| PsuI | RGATCY | 2 cut(s) | 580, 1348 |
| RsaI | GTAC | 3 cut(s) | 358, 1525, 1541 |
| RsaNI | GTAC | 3 cut(s) | 357, 1524, 1540 |
| SaqAI | TTAA | 5 cut(s) | 162, 372, 378, 384, 1627 |
| SatI | GCNGC | 6 cut(s) | 16, 45, 1199, 1221, 1254, 1368 |
| Sau3AI | GATC | 6 cut(s) | 580, 601, 926, 1002, 1348, 1421 |
| Sau96I | GGNCC | 7 cut(s) | 284, 302, 1080, 1081, 1294, 1412, 1514 |
| ScaI | AGTACT | 1 cut(s) | 358 |
| SchI | GAGTC | 2 cut(s) | 98, 1043 |
| SduI | GDGCHC | 1 cut(s) | 1084 |
| SfaNI | GCATC | 7 cut(s) | 440, 466, 581, 624, 675, 1227, 1596 |
| SfcI | CTRYAG | 1 cut(s) | 1570 |
| SinI | GGWCC | 2 cut(s) | 1412, 1514 |
| SmlI | CTYRAG | 2 cut(s) | 377, 998 |
| SmoI | CTYRAG | 2 cut(s) | 377, 998 |
| Sse9I | AATT | 7 cut(s) | 340, 402, 514, 1013, 1128, 1181, 1287 |
| SsiI | CCGC | 1 cut(s) | 15 |
| SspMI | CTAG | 2 cut(s) | 1092, 1257 |
| StyI | CCWWGG | 1 cut(s) | 280 |
| TaaI | ACNGT | 7 cut(s) | 41, 129, 361, 697, 779, 1063, 1447 |
| TaiI | ACGT | 3 cut(s) | 186, 682, 1234 |
| TaqI | TCGA | 6 cut(s) | 220, 484, 733, 1075, 1399, 1424 |
| TasI | AATT | 7 cut(s) | 340, 402, 514, 1013, 1128, 1181, 1287 |
| TatI | WGTACW | 3 cut(s) | 356, 1523, 1539 |
| TauI | GCSGC | 1 cut(s) | 18 |
| TfiI | GAWTC | 8 cut(s) | 24, 188, 254, 502, 1262, 1301, 1391, 1547 |
| Tru1I | TTAA | 5 cut(s) | 162, 372, 378, 384, 1627 |
| Tru9I | TTAA | 5 cut(s) | 162, 372, 378, 384, 1627 |
| TscAI | CASTG | 7 cut(s) | 34, 46, 132, 869, 874, 1197, 1586 |
| TseFI | GTSAC | 2 cut(s) | 90, 113 |
| TseI | GCWGC | 5 cut(s) | 44, 1198, 1220, 1253, 1367 |
| Tsp45I | GTSAC | 2 cut(s) | 90, 113 |
| TspDTI | ATGAA | 2 cut(s) | 210, 1194 |
| TspGWI | ACGGA | 1 cut(s) | 505 |
| TspRI | CASTG | 7 cut(s) | 34, 46, 132, 869, 874, 1197, 1586 |
| Vha464I | CTTAAG | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 2 cut(s) | 1412, 1514 |
| XapI | RAATTY | 3 cut(s) | 514, 1181, 1287 |
| XmiI | GTMKAC | 1 cut(s) | 416 |
| XmnI | GAANNNNTTC | 1 cut(s) | 648 |
| XspI | CTAG | 2 cut(s) | 1092, 1257 |
| ZrmI | AGTACT | 1 cut(s) | 358 |