Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005975

Physical Location & Seq

Genomic Coordinates Reverse (-)

50776438 .. 50778983

Gene Structure 2546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1208200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGGTTTTGGAGGTTTGGGATTCAGTGATGTAAGCAGTGCTGTGAGAAGGAAAAGGAGTAACACATCTCGTCGTCCTCGGAATGAGTCACAGCTACCTTTGGATTGTCGTGATAATGTGTCATCAACTCCTTCAGAAGATGTAAGCAAAAGTGATGAGAATAACAATGGCGGTTCAATTACTCAAAAGAAAGATATTGATTTGAACTTATGCAGCGCAAGGGCTTCATTTAGTAACATTTTGGAGGCTGAGACTGTCCAGAATATGGATAACGGTGAGGGGGGAGGATCCGGAGAATCTGATGAATCTTCAAATGATGGTTCTTTTCGAGGCAGTGACGAGCATAGGCATAGGGGGATTGAATCCAAAAGGTCCAGCAAGGGTGCCCTTGCCCCGGCTAATTGGAAAAGCTCCAACAACGTTGGGCCTTTTGGAGTTGTTTCCGATTGCTCAGAGAATGAGAATAAAGTGAAAATGGTTAAGCTTAAAGTTGGTGGTGTTACACGCACAATTCAGGCCAAGTCTTCATCTGATGGTGCATCTGCTGTTGGGCCATCTTCTGTAAAATCATCTCGCATTTCAGATACCCCTCGACCACGGCAGAAGTTGATTCTTCAGGAAGACTCAGATGACAATCCTTCCCTTAGTTCCGATAAAGAAAGTGGGTTACGAGGAGTCCCACAGAAGGATACATCTAAAAGTGTTGCTCATGTTGGGAAAGTTGAAGAACTTGTTCGCAAGAGTAAACGGGTCCCTAAGAGACGCTTCCTGGATGCAGTTGATGATGATGACATGGAAGTTCGATACCTTGAAAAACTCAAAACATCTAAGGTCACCTCAGATTATACTGCAGAGTACAATGAGGATGAGGAAAGGAAAACCAGAAAAGAAAGGAAGATTTCAACAGTGATGAAGGGGAGTGGTATTGGACCAAGTGTAGATTTGGCAGATTATGCCATCAAAAGACGGTGGCCATCGGCGCCAGGCCGAGCAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAPA-1 zf-HIT

Protein Analysis

334

Amino Acids

36.22

Weight (kDa)

8.93

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56460 AT1G56460 AT1G56460
fragaria_vesca	FvH4_6g07480 FvH4_6g07480 FvH4_6g07480 FvH4_6g07480
malus_domestica	MD00G1208200.v1.1 MD04G1214800.v1.1 MD04G1215000.v1.1 MD12G1205400.v1.1
prunus_persica	Prupe.6G312500_v2.0.a1
pyrus_communis	pycom12g19330
rosa_chinensis	RchiOBHm_Chr3g0457151 RchiOBHm_Chr3g0457181
rosa_laevigata	RLG00000025244
rosa_multiflora	Rmu_sc0000488.1_g000012
rosa_roxburghii	Rroxscaffold_6G00422130
rosa_rugosa	Rorug03G0019200 Rorug03G0019300 Rorug03G0019300 Rorug03G0019400
rosa_samantha	Rh3AG079100 Rh3BG080800 Rh3CG080900 Rh3DG082800
rosa_wichuraiana	Rw3G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	386, 982
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	1 cut(s)	174
AclI	AACGTT	1 cut(s)	423
AclWI	GGATC	2 cut(s)	285, 298
AcoI	YGGCCR	1 cut(s)	974
AcuI	CTGAAG	2 cut(s)	120, 602
AcyI	GRCGYC	1 cut(s)	983
AfaI	GTAC	1 cut(s)	860
AfiI	CCNNNNNNNGG	3 cut(s)	268, 397, 688
AgsI	TTSAA	7 cut(s)	180, 208, 315, 365, 728, 815, 906
AjnI	CCWGG	2 cut(s)	771, 985
AluBI	AGCT	3 cut(s)	97, 414, 487
AluI	AGCT	3 cut(s)	97, 414, 487
Alw26I	GTCTC	2 cut(s)	248, 757
AlwI	GGATC	2 cut(s)	285, 298
Aor13HI	TCCGGA	1 cut(s)	293
AoxI	GGCC	5 cut(s)	428, 519, 554, 974, 988
ApeKI	GCWGC	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	221, 985
AspS9I	GGNCC	5 cut(s)	375, 428, 554, 754, 932
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	2 cut(s)	290, 829
AvaII	GGWCC	3 cut(s)	375, 754, 932
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	976
BamHI	GGATCC	1 cut(s)	290
BanI	GGYRCC	2 cut(s)	386, 982
BbsI	GAAGAC	2 cut(s)	519, 630
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	5 cut(s)	314, 530, 565, 968, 985
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	773, 987
BciVI	GTATCC	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	248, 757
BfmI	CTRYAG	1 cut(s)	852
BfoI	RGCGCY	1 cut(s)	986
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	3 cut(s)	398, 773, 987
Bme18I	GGWCC	3 cut(s)	375, 754, 932
BmgT120I	GGNCC	5 cut(s)	375, 428, 554, 754, 932
BmiI	GGNNCC	5 cut(s)	292, 388, 755, 756, 984
BmrFI	CCNGG	3 cut(s)	398, 773, 987
BmsI	GCATC	2 cut(s)	551, 766
BpiI	GAAGAC	2 cut(s)	519, 630
BpuMI	CCSGG	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	983
BsaJI	CCNNGG	3 cut(s)	80, 396, 599
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 397, 688
Bse8I	GATNNNNATC	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	773, 987
BseDI	CCNNGG	3 cut(s)	80, 396, 599
BseGI	GGATG	2 cut(s)	781, 874
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	3 cut(s)	268, 397, 688
BseMII	CTCAG	4 cut(s)	243, 468, 642, 855
BseRI	GAGGAG	1 cut(s)	690
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	228
BshFI	GGCC	5 cut(s)	430, 521, 556, 976, 990
BshNI	GGYRCC	2 cut(s)	386, 982
BsiSI	CCGG	2 cut(s)	294, 398
BslFI	GGGAC	2 cut(s)	665, 740
BslI	CCNNNNNNNGG	3 cut(s)	268, 397, 688
BsmAI	GTCTC	2 cut(s)	248, 757
BsmBI	CGTCTC	1 cut(s)	757
BsmFI	GGGAC	2 cut(s)	665, 740
BsnI	GGCC	5 cut(s)	430, 521, 556, 976, 990
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp13I	TCCGGA	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	290
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	5 cut(s)	430, 521, 556, 976, 990
BspCNI	CTCAG	4 cut(s)	244, 467, 641, 854
BspEI	TCCGGA	1 cut(s)	293
BspLI	GGNNCC	5 cut(s)	292, 388, 755, 756, 984
BspMAI	CTGCAG	1 cut(s)	856
BspPI	GGATC	2 cut(s)	285, 298
BspT107I	GGYRCC	2 cut(s)	386, 982
BssECI	CCNNGG	3 cut(s)	80, 396, 599
BssMI	GATC	1 cut(s)	290
BssNI	GRCGYC	1 cut(s)	983
Bst2UI	CCWGG	2 cut(s)	773, 987
Bst4CI	ACNGT	4 cut(s)	259, 278, 910, 972
BstACI	GRCGYC	1 cut(s)	983
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstDEI	CTNAG	7 cut(s)	252, 454, 628, 647, 759, 831, 841
BstDSI	CCRYGG	1 cut(s)	599
BstEII	GGTNACC	1 cut(s)	835
BstF5I	GGATG	2 cut(s)	781, 874
BstH2I	RGCGCY	1 cut(s)	986
BstHHI	GCGC	2 cut(s)	221, 985
BstKTI	GATC	1 cut(s)	293
BstMAI	GTCTC	2 cut(s)	248, 757
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	956, 982
BstNI	CCWGG	2 cut(s)	773, 987
BstPI	GGTNACC	1 cut(s)	835
BstSCI	CCNGG	3 cut(s)	396, 771, 985
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	228
BstV2I	GAAGAC	2 cut(s)	519, 630
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	5 cut(s)	430, 521, 556, 976, 990
BtgI	CCRYGG	1 cut(s)	599
BtsCI	GGATG	2 cut(s)	781, 874
BtsI	GCAGTG	3 cut(s)	46, 343, 1002
BtsIMutI	CAGTG	5 cut(s)	34, 46, 343, 915, 1002
CfoI	GCGC	2 cut(s)	221, 985
Cfr13I	GGNCC	5 cut(s)	375, 428, 554, 754, 932
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	859
CviAII	CATG	2 cut(s)	713, 796
CviQI	GTAC	1 cut(s)	859
DdeI	CTNAG	7 cut(s)	252, 454, 628, 647, 759, 831, 841
DinI	GGCGCC	1 cut(s)	984
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	974
Eco47I	GGWCC	3 cut(s)	375, 754, 932
Eco57I	CTGAAG	2 cut(s)	120, 602
Eco91I	GGTNACC	1 cut(s)	835
EcoO109I	RGGNCCY	1 cut(s)	754
EcoO65I	GGTNACC	1 cut(s)	835
EcoRII	CCWGG	2 cut(s)	771, 985
EgeI	GGCGCC	1 cut(s)	984
EheI	GGCGCC	1 cut(s)	984
Esp3I	CGTCTC	1 cut(s)	757
FaeI	CATG	2 cut(s)	716, 799
FaiI	YATR	8 cut(s)	214, 269, 348, 354, 714, 797, 849, 957
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FaqI	GGGAC	2 cut(s)	665, 740
FatI	CATG	2 cut(s)	712, 795
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	2 cut(s)	788, 881
Fsp4HI	GCNGC	1 cut(s)	217
GlaI	GCGC	2 cut(s)	220, 984
GluI	GCNGC	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	986
HaeIII	GGCC	5 cut(s)	430, 521, 556, 976, 990
HapII	CCGG	2 cut(s)	294, 398
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	2 cut(s)	221, 985
Hin1I	GRCGYC	1 cut(s)	983
Hin1II	CATG	2 cut(s)	716, 799
Hin6I	GCGC	2 cut(s)	219, 983
HinP1I	GCGC	2 cut(s)	219, 983
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	8 cut(s)	24, 89, 299, 308, 365, 613, 626, 678
HpaII	CCGG	2 cut(s)	294, 398
HphI	GGTGA	2 cut(s)	290, 829
Hpy166II	GTNNAC	1 cut(s)	749
Hpy188III	TCNNGA	4 cut(s)	113, 262, 294, 620
Hpy8I	GTNNAC	1 cut(s)	749
Hpy99I	CGWCG	1 cut(s)	78
HpyAV	CCTTC	5 cut(s)	45, 144, 651, 682, 910
HpyCH4III	ACNGT	4 cut(s)	259, 278, 910, 972
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	216, 542, 779, 854
HpyF10VI	GCNNNNNNNGC	2 cut(s)	956, 982
HpyF3I	CTNAG	7 cut(s)	252, 454, 628, 647, 759, 831, 841
HpySE526I	ACGT	1 cut(s)	423
Hsp92I	GRCGYC	1 cut(s)	983
Hsp92II	CATG	2 cut(s)	716, 799
HspAI	GCGC	2 cut(s)	219, 983
KasI	GGCGCC	1 cut(s)	982
KflI	GGGWCCC	1 cut(s)	754
Kpn2I	TCCGGA	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	2 cut(s)	551, 766
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	7 cut(s)	62, 90, 236, 338, 502, 669, 835
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	8 cut(s)	152, 303, 519, 552, 608, 635, 740, 910
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	976
MluCI	AATT	3 cut(s)	180, 403, 513
MluNI	TGGCCA	1 cut(s)	976
Mly113I	GGCGCC	1 cut(s)	983
MlyI	GAGTC	3 cut(s)	98, 620, 687
MmeI	TCCRAC	1 cut(s)	441
Mox20I	TGGCCA	1 cut(s)	976
MroI	TCCGGA	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	735
MscI	TGGCCA	1 cut(s)	976
MseI	TTAA	2 cut(s)	483, 489
Msp20I	TGGCCA	1 cut(s)	976
MspI	CCGG	2 cut(s)	294, 398
MspR9I	CCNGG	3 cut(s)	398, 773, 987
MvaI	CCWGG	2 cut(s)	773, 987
MwoI	GCNNNNNNNGC	2 cut(s)	956, 982
NarI	GGCGCC	1 cut(s)	983
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	2 cut(s)	716, 799
NlaIV	GGNNCC	5 cut(s)	292, 388, 755, 756, 984
NmuCI	GTSAC	3 cut(s)	90, 338, 835
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	5 cut(s)	24, 299, 308, 365, 613
PflMI	CCANNNNNTGG	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	1 cut(s)	218
PleI	GAGTC	3 cut(s)	97, 620, 686
PluTI	GGCGCC	1 cut(s)	986
PpsI	GAGTC	3 cut(s)	97, 620, 686
PpuMI	RGGWCCY	1 cut(s)	754
Psp1406I	AACGTT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	2 cut(s)	771, 985
PspEI	GGTNACC	1 cut(s)	835
PspGI	CCWGG	2 cut(s)	771, 985
PspN4I	GGNNCC	5 cut(s)	292, 388, 755, 756, 984
PspPI	GGNCC	5 cut(s)	375, 428, 554, 754, 932
PspPPI	RGGWCCY	1 cut(s)	754
PstI	CTGCAG	1 cut(s)	856
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	1 cut(s)	860
RsaNI	GTAC	1 cut(s)	859
SaqAI	TTAA	2 cut(s)	483, 489
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	1 cut(s)	290
Sau96I	GGNCC	5 cut(s)	375, 428, 554, 754, 932
SchI	GAGTC	3 cut(s)	98, 620, 687
ScrFI	CCNGG	3 cut(s)	398, 773, 987
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	2 cut(s)	551, 766
SfcI	CTRYAG	1 cut(s)	852
SfoI	GGCGCC	1 cut(s)	984
SinI	GGWCC	3 cut(s)	375, 754, 932
Sse9I	AATT	3 cut(s)	180, 403, 513
SsiI	CCGC	1 cut(s)	174
SspDI	GGCGCC	1 cut(s)	982
StyD4I	CCNGG	3 cut(s)	396, 771, 985
TaaI	ACNGT	4 cut(s)	259, 278, 910, 972
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	3 cut(s)	331, 595, 805
TasI	AATT	3 cut(s)	180, 403, 513
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	5 cut(s)	24, 299, 308, 365, 613
Tru1I	TTAA	2 cut(s)	483, 489
Tru9I	TTAA	2 cut(s)	483, 489
TscAI	CASTG	5 cut(s)	34, 46, 343, 915, 1002
TseFI	GTSAC	3 cut(s)	90, 338, 835
TseI	GCWGC	1 cut(s)	216
Tsp45I	GTSAC	3 cut(s)	90, 338, 835
TspDTI	ATGAA	4 cut(s)	219, 321, 519, 929
TspRI	CASTG	5 cut(s)	34, 46, 343, 915, 1002
Van91I	CCANNNNNTGG	1 cut(s)	268
VpaK11BI	GGWCC	3 cut(s)	375, 754, 932
XmnI	GAANNNNTTC	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.