pycom12g19330

PAPA-1-like conserved region

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
21208042 .. 21210803
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g19330.4

Sequence Viewer

Length: 1716 bp
ATGGAGGGTTTTGGAGGTTTGGGATTCAGCGATGGAAGCAATGCTGTGAGGAAGAAAAGGAGTAACACGTCTCGTCGTCCTCGGAACGAGTCGCAGCTACCTTTGGATTGTCGTGATAATGTGTCATCAACTCCTTCTTCGGAAGATGTAAGCAAAAGTGATGAGAATAACGATGATGGTTCAATTACTCGAAAGAGAGACATTAATTTGAACTTATGCAGCGCAAGGGCTTCGTTTAGTAACATTATGGAAGCTGAGACTGTCCAGAATATGGATAAAGGTGAGGGAGGAGGTTCCGGAGAATCTGAGGAAGCTTCAAACGATGGTTCATTTCGAGGCAGTGATGAACATAGGCATAGGGGGATTGATTCCAAAAGGTCCAGCAAGGGTGCTCTTGCCCCTGCTAATTGGAAAGGCACAAACAAGCTTGGGCCTGGTGGAGTTGTTTCAGATGGCTCAGAGAATGAGAATAAAGTGAAAATGGTTAAACTTAAAGTTGGTGGTGTTACACGCACAATTCAGGCCAAGTCTACATCTGGTGGTGCATCTACTGTTGGTCCGTCTTCTGTAAAATCTTCTCGCATTTCAGATGCCCCTCGACCACGCCAGAAGTTGATTCTTCAGGAAGACTCAGATGATAGTCCTTCCCTTAGTTCAGATAAAGGAAGTGGGTTACGAGGAGTCCCACGGAAGGATACATCTAAAACTGTCACTCGTGTTGGGAAGGCTGAAGAACCTGTGCGCAAGAGCAAACGGGTCCCTAAGAGACGCGTCCTGGATACGGTTGATGATGGAGATGATGATGACATGGAAGTTCGATACCTTGAAAAACTCAAAACATCTAAGGTCACCTCAGATTATACTGCAGAGTACAATGAGGATGAGGAAAGGAAAACTAGAAAAGAAAGGAAGATTTCGACTGTGATGAAGGGGAGTGGTATTGGACTAAGTGTAGATTTGGGAGATTATGGCATACCAAGATCAGGCAAGGATGGTAAGAAGTCCAGAGTAGGAAGCGTATCTGATGATACTGATTATGTTGAAGAGGAAGAGGAACCTGTTTCTGATAGTGAGCATATTACTAAAAGCAAAAAATCGAGAAAGGACTTTGTTGAATCATCCTCATATAACAAGAAGGAGATGACAGTCACTACTCGTCAAAGGGCTCTTAACACTGGCAAAGATGTCTCTTCCAGCTCTGGTGCAGGTTTATTTGAGTTCCCAAATGGGTTGCCCCCGGCTCCACCAAGAAAGCAAAAGGAGAAACCCTGCGCATTGGAGCAGCAAATCAAGAAAACTGAGGCGGCGGAGAGACGTAGGATGCAAGTAGAGAAGGCAACTCGAGAATCTGAGGCTGAGGCAATCAGAAAAATTCTGGGGCAAGATTCCAGTAGGAAGAAACGAGAAGACAAGATAAAGAAACGGCAAGAAGATATGGCTCAGGAGAGGGCTGCAAATGCTTTCATACTTCCGCCAGATTCTGTCCGATGGGTGATGGGTCCATCAGGATCGGTTGTAACCTTCCCCAATGAAATGGGCTTGCCAGCTATATTCGACTCCAAGCCTTGCAGTTACCCTCCTCCCCGAGAAAAGTGTGCCGGACCATATTGTACAAATCCATACAAGTACCGGGATTCACAGTCGAAGCTCCCTTTGTGCAGTCTCCGGTGTTACAAGGCAATACATGAAAAGATGGCTCCTCTATCTGCCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

572

Amino Acids

62.63

Weight (kDa)

9.2

Isoelectric Point (pI)

52.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 743, 1273
Acc36I ACCTGC 1 cut(s) 1196
AccB7I CCANNNNNTGG 1 cut(s) 271
AccI GTMKAC 1 cut(s) 530
AccII CGCG 1 cut(s) 771
AccIII TCCGGA 1 cut(s) 296
AciI CCGC 3 cut(s) 1304, 1307, 1472
AclWI GGATC 1 cut(s) 1516
AcsI RAATTY 1 cut(s) 1371
AcuI CTGAAG 2 cut(s) 605, 750
AfaI GTAC 3 cut(s) 872, 1612, 1628
AfiI CCNNNNNNNGG 4 cut(s) 271, 691, 781, 983
AflIII ACRYGT 2 cut(s) 66, 769
AgsI TTSAA 6 cut(s) 183, 211, 318, 827, 1043, 1115
AjiI CACGTC 1 cut(s) 69
AjnI CCWGG 2 cut(s) 433, 774
AluBI AGCT 7 cut(s) 97, 254, 314, 427, 1197, 1547, 1648
AluI AGCT 7 cut(s) 97, 254, 314, 427, 1197, 1547, 1648
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 7 cut(s) 75, 192, 251, 760, 1192, 1306, 1667
AlwI GGATC 1 cut(s) 1516
AlwNI CAGNNNCTG 1 cut(s) 1481
Ama87I CYCGRG 2 cut(s) 1341, 1584
Aor13HI TCCGGA 1 cut(s) 296
AoxI GGCC 2 cut(s) 431, 522
ApeKI GCWGC 4 cut(s) 94, 219, 1282, 1451
ApoI RAATTY 1 cut(s) 1371
AseI ATTAAT 1 cut(s) 204
AspLEI GCGC 3 cut(s) 224, 744, 1274
AspS9I GGNCC 6 cut(s) 378, 431, 557, 757, 1499, 1601
AsuC2I CCSGG 2 cut(s) 1238, 1631
AsuHPI GGTGA 3 cut(s) 293, 841, 1504
AvaI CYCGRG 2 cut(s) 1341, 1584
AvaII GGWCC 5 cut(s) 378, 557, 757, 1499, 1601
BanII GRGCYC 1 cut(s) 1168
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 3 cut(s) 555, 633, 1413
Bbv12I GWGCWC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 1356
BbvI GCAGC 4 cut(s) 106, 231, 1294, 1438
BceAI ACGGC 1 cut(s) 1439
BcgI CGANNNNNNTGC 2 cut(s) 213, 247
BciT130I CCWGG 2 cut(s) 435, 776
BciVI GTATCC 2 cut(s) 688, 772
BcnI CCSGG 2 cut(s) 1238, 1631
BcoDI GTCTC 7 cut(s) 75, 192, 251, 760, 1192, 1306, 1667
BfaI CTAG 1 cut(s) 897
BfmI CTRYAG 1 cut(s) 864
BfuAI ACCTGC 1 cut(s) 1196
BfuI GTATCC 2 cut(s) 688, 772
BisI GCNGC 5 cut(s) 95, 220, 1283, 1305, 1452
BlsI GCNGC 5 cut(s) 96, 221, 1284, 1306, 1453
Bme1390I CCNGG 4 cut(s) 435, 776, 1238, 1631
Bme18I GGWCC 5 cut(s) 378, 557, 757, 1499, 1601
BmeT110I CYCGRG 2 cut(s) 1341, 1584
BmgBI CACGTC 1 cut(s) 69
BmgT120I GGNCC 6 cut(s) 378, 431, 557, 757, 1499, 1601
BmiI GGNNCC 7 cut(s) 295, 758, 759, 1056, 1242, 1500, 1698
BmrFI CCNGG 4 cut(s) 435, 776, 1238, 1631
BmsI GCATC 3 cut(s) 554, 580, 1311
BpiI GAAGAC 3 cut(s) 555, 633, 1413
Bpu10I CCTNAGC 2 cut(s) 1356, 1440
BpuMI CCSGG 2 cut(s) 1238, 1631
BsaJI CCNNGG 3 cut(s) 80, 686, 1236
BsaWI WCCGGW 2 cut(s) 296, 1665
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 691, 781, 983
Bse1I ACTGG 2 cut(s) 1180, 1389
Bse3DI GCAATG 1 cut(s) 46
BseAI TCCGGA 1 cut(s) 296
BseBI CCWGG 2 cut(s) 435, 776
BseDI CCNNGG 3 cut(s) 80, 686, 1236
BseGI GGATG 4 cut(s) 886, 997, 1118, 1326
BseLI CCNNNNNNNGG 4 cut(s) 271, 691, 781, 983
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 9 cut(s) 246, 297, 471, 645, 867, 1290, 1341, 1347, 1454
BseNI ACTGG 2 cut(s) 1180, 1389
BseRI GAGGAG 4 cut(s) 303, 693, 1569, 1689
BseXI GCAGC 4 cut(s) 106, 231, 1294, 1438
BsgI GTGCAG 2 cut(s) 1224, 1678
Bsh1236I CGCG 1 cut(s) 771
BshFI GGCC 2 cut(s) 433, 524
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 2 cut(s) 1341, 1584
BsiSI CCGG 5 cut(s) 297, 1238, 1599, 1630, 1666
BslFI GGGAC 2 cut(s) 668, 743
BslI CCNNNNNNNGG 4 cut(s) 271, 691, 781, 983
BsmAI GTCTC 7 cut(s) 75, 192, 251, 760, 1192, 1306, 1667
BsmBI CGTCTC 3 cut(s) 75, 760, 1306
BsmFI GGGAC 2 cut(s) 668, 743
BsnI GGCC 2 cut(s) 433, 524
BsoBI CYCGRG 2 cut(s) 1341, 1584
Bsp1286I GDGCHC 2 cut(s) 394, 1168
Bsp13I TCCGGA 1 cut(s) 296
Bsp1407I TGTACA 1 cut(s) 1610
Bsp143I GATC 2 cut(s) 980, 1508
BspACI CCGC 3 cut(s) 1304, 1307, 1472
BspANI GGCC 2 cut(s) 433, 524
BspCNI CTCAG 9 cut(s) 247, 298, 470, 644, 866, 1291, 1342, 1348, 1453
BspEI TCCGGA 1 cut(s) 296
BspFNI CGCG 1 cut(s) 771
BspLI GGNNCC 7 cut(s) 295, 758, 759, 1056, 1242, 1500, 1698
BspMAI CTGCAG 1 cut(s) 868
BspMI ACCTGC 1 cut(s) 1196
BspPI GGATC 1 cut(s) 1516
BsrDI GCAATG 1 cut(s) 46
BsrGI TGTACA 1 cut(s) 1610
BsrI ACTGG 2 cut(s) 1180, 1389
BssECI CCNNGG 3 cut(s) 80, 686, 1236
BssMI GATC 2 cut(s) 980, 1508
BssSI CACGAG 1 cut(s) 714
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 2 cut(s) 435, 776
Bst4CI ACNGT 7 cut(s) 262, 553, 709, 784, 922, 1147, 1641
Bst6I CTCTTC 3 cut(s) 1038, 1044, 1195
BstAUI TGTACA 1 cut(s) 1610
BstC8I GCNNGC 2 cut(s) 1541, 1545
BstDSI CCRYGG 1 cut(s) 686
BstEII GGTNACC 1 cut(s) 847
BstF5I GGATG 4 cut(s) 886, 997, 1118, 1326
BstFNI CGCG 1 cut(s) 771
BstHHI GCGC 3 cut(s) 224, 744, 1274
BstKTI GATC 2 cut(s) 983, 1511
BstMAI GTCTC 7 cut(s) 75, 192, 251, 760, 1192, 1306, 1667
BstMBI GATC 2 cut(s) 980, 1508
BstMWI GCNNNNNNNGC 2 cut(s) 36, 1457
BstNI CCWGG 2 cut(s) 435, 776
BstPI GGTNACC 1 cut(s) 847
BstSCI CCNGG 4 cut(s) 433, 774, 1236, 1629
BstSFI CTRYAG 1 cut(s) 864
BstUI CGCG 1 cut(s) 771
BstV1I GCAGC 4 cut(s) 106, 231, 1294, 1438
BstV2I GAAGAC 3 cut(s) 555, 633, 1413
BstXI CCANNNNNNTGG 1 cut(s) 1534
BsuI GTATCC 2 cut(s) 688, 772
BsuRI GGCC 2 cut(s) 433, 524
BtgI CCRYGG 1 cut(s) 686
BtgZI GCGATG 1 cut(s) 45
BtrI CACGTC 1 cut(s) 69
BtsCI GGATG 4 cut(s) 886, 997, 1118, 1326
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 346, 1173
BveI ACCTGC 1 cut(s) 1196
Cac8I GCNNGC 2 cut(s) 1541, 1545
CaiI CAGNNNCTG 1 cut(s) 1481
CfoI GCGC 3 cut(s) 224, 744, 1274
Cfr13I GGNCC 6 cut(s) 378, 431, 557, 757, 1499, 1601
CseI GACGC 2 cut(s) 760, 777
Csp6I GTAC 3 cut(s) 871, 1611, 1627
CviAII CATG 2 cut(s) 808, 1685
CviQI GTAC 3 cut(s) 871, 1611, 1627
DpnI GATC 2 cut(s) 982, 1510
DpnII GATC 2 cut(s) 980, 1508
Eam1104I CTCTTC 3 cut(s) 1038, 1044, 1195
EarI CTCTTC 3 cut(s) 1038, 1044, 1195
EciI GGCGGA 2 cut(s) 1322, 1461
Eco24I GRGCYC 1 cut(s) 1168
Eco47I GGWCC 5 cut(s) 378, 557, 757, 1499, 1601
Eco57I CTGAAG 2 cut(s) 605, 750
Eco88I CYCGRG 2 cut(s) 1341, 1584
Eco91I GGTNACC 1 cut(s) 847
EcoO109I RGGNCCY 1 cut(s) 757
EcoO65I GGTNACC 1 cut(s) 847
EcoRII CCWGG 2 cut(s) 433, 774
EcoT38I GRGCYC 1 cut(s) 1168
Esp3I CGTCTC 3 cut(s) 75, 760, 1306
FaeI CATG 2 cut(s) 811, 1688
FaqI GGGAC 2 cut(s) 668, 743
FatI CATG 2 cut(s) 807, 1684
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 5 cut(s) 95, 220, 1283, 1305, 1452
FokI GGATG 4 cut(s) 893, 1004, 1105, 1333
FriOI GRGCYC 1 cut(s) 1168
Fsp4HI GCNGC 5 cut(s) 95, 220, 1283, 1305, 1452
FspBI CTAG 1 cut(s) 897
FspI TGCGCA 2 cut(s) 743, 1273
GlaI GCGC 3 cut(s) 223, 743, 1273
GluI GCNGC 5 cut(s) 95, 220, 1283, 1305, 1452
HaeIII GGCC 2 cut(s) 433, 524
HapII CCGG 5 cut(s) 297, 1238, 1599, 1630, 1666
HgaI GACGC 2 cut(s) 760, 777
HhaI GCGC 3 cut(s) 224, 744, 1274
Hin1II CATG 2 cut(s) 811, 1688
Hin6I GCGC 3 cut(s) 222, 742, 1272
HinP1I GCGC 3 cut(s) 222, 742, 1272
HindIII AAGCTT 2 cut(s) 312, 425
HpaII CCGG 5 cut(s) 297, 1238, 1599, 1630, 1666
HphI GGTGA 3 cut(s) 293, 841, 1504
Hpy166II GTNNAC 1 cut(s) 531
Hpy8I GTNNAC 1 cut(s) 531
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 8 cut(s) 144, 654, 685, 718, 922, 1129, 1327, 1531
HpyCH4III ACNGT 7 cut(s) 262, 553, 709, 784, 922, 1147, 1641
HpyCH4IV ACGT 2 cut(s) 68, 1315
HpyCH4V TGCA 8 cut(s) 219, 545, 866, 1205, 1324, 1454, 1569, 1659
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 1457
HpySE526I ACGT 2 cut(s) 68, 1315
Hsp92II CATG 2 cut(s) 811, 1688
HspAI GCGC 3 cut(s) 222, 742, 1272
KflI GGGWCCC 1 cut(s) 757
Kpn2I TCCGGA 1 cut(s) 296
Kzo9I GATC 2 cut(s) 980, 1508
LmnI GCTCC 4 cut(s) 1246, 1279, 1653, 1702
Lsp1109I GCAGC 4 cut(s) 106, 231, 1294, 1438
LweI GCATC 3 cut(s) 554, 580, 1311
MaeI CTAG 1 cut(s) 897
MaeII ACGT 2 cut(s) 68, 1315
MalI GATC 2 cut(s) 982, 1510
MboI GATC 2 cut(s) 980, 1508
MhlI GDGCHC 2 cut(s) 394, 1168
MluCI AATT 5 cut(s) 183, 205, 406, 516, 1371
MluI ACGCGT 1 cut(s) 769
MlyI GAGTC 4 cut(s) 98, 623, 690, 1550
MroI TCCGGA 1 cut(s) 296
MseI TTAA 4 cut(s) 204, 486, 492, 1170
MspI CCGG 5 cut(s) 297, 1238, 1599, 1630, 1666
MspR9I CCNGG 4 cut(s) 435, 776, 1238, 1631
MvaI CCWGG 2 cut(s) 435, 776
MvnI CGCG 1 cut(s) 771
MwoI GCNNNNNNNGC 2 cut(s) 36, 1457
NciI CCSGG 2 cut(s) 1238, 1631
NdeII GATC 2 cut(s) 980, 1508
NlaIII CATG 2 cut(s) 811, 1688
NlaIV GGNNCC 7 cut(s) 295, 758, 759, 1056, 1242, 1500, 1698
NmuCI GTSAC 3 cut(s) 709, 847, 1147
NsbI TGCGCA 2 cut(s) 743, 1273
PaeR7I CTCGAG 1 cut(s) 1341
PfeI GAWTC 9 cut(s) 24, 302, 368, 616, 1115, 1346, 1385, 1478, 1634
PflMI CCANNNNNTGG 1 cut(s) 271
PfoI TCCNGGA 1 cut(s) 774
PkrI GCNGC 5 cut(s) 96, 221, 1284, 1306, 1453
PleI GAGTC 4 cut(s) 97, 623, 689, 1550
PpsI GAGTC 4 cut(s) 97, 623, 689, 1550
PpuMI RGGWCCY 1 cut(s) 757
PshBI ATTAAT 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 757
Psp6I CCWGG 2 cut(s) 433, 774
PspEI GGTNACC 1 cut(s) 847
PspGI CCWGG 2 cut(s) 433, 774
PspN4I GGNNCC 7 cut(s) 295, 758, 759, 1056, 1242, 1500, 1698
PspPI GGNCC 6 cut(s) 378, 431, 557, 757, 1499, 1601
PspPPI RGGWCCY 1 cut(s) 757
PstI CTGCAG 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 1481
RsaI GTAC 3 cut(s) 872, 1612, 1628
RsaNI GTAC 3 cut(s) 871, 1611, 1627
SaqAI TTAA 4 cut(s) 204, 486, 492, 1170
SatI GCNGC 5 cut(s) 95, 220, 1283, 1305, 1452
Sau3AI GATC 2 cut(s) 980, 1508
Sau96I GGNCC 6 cut(s) 378, 431, 557, 757, 1499, 1601
SchI GAGTC 4 cut(s) 98, 623, 690, 1550
ScrFI CCNGG 4 cut(s) 435, 776, 1238, 1631
SduI GDGCHC 2 cut(s) 394, 1168
SfaNI GCATC 3 cut(s) 554, 580, 1311
SfcI CTRYAG 1 cut(s) 864
Sfr274I CTCGAG 1 cut(s) 1341
SinI GGWCC 5 cut(s) 378, 557, 757, 1499, 1601
SlaI CTCGAG 1 cut(s) 1341
SmlI CTYRAG 1 cut(s) 1341
SmoI CTYRAG 1 cut(s) 1341
Sse9I AATT 5 cut(s) 183, 205, 406, 516, 1371
SsiI CCGC 3 cut(s) 1304, 1307, 1472
SspMI CTAG 1 cut(s) 897
StyD4I CCNGG 4 cut(s) 433, 774, 1236, 1629
TaaI ACNGT 7 cut(s) 262, 553, 709, 784, 922, 1147, 1641
TaiI ACGT 2 cut(s) 71, 1318
TaqI TCGA 9 cut(s) 190, 334, 598, 817, 917, 1097, 1342, 1554, 1643
TasI AATT 5 cut(s) 183, 205, 406, 516, 1371
TatI WGTACW 2 cut(s) 870, 1610
TauI GCSGC 1 cut(s) 1307
TfiI GAWTC 9 cut(s) 24, 302, 368, 616, 1115, 1346, 1385, 1478, 1634
Tru1I TTAA 4 cut(s) 204, 486, 492, 1170
Tru9I TTAA 4 cut(s) 204, 486, 492, 1170
TscAI CASTG 2 cut(s) 346, 1180
TseFI GTSAC 3 cut(s) 709, 847, 1147
TseI GCWGC 4 cut(s) 94, 219, 1282, 1451
Tsp45I GTSAC 3 cut(s) 709, 847, 1147
TspDTI ATGAA 6 cut(s) 318, 360, 941, 1453, 1545, 1701
TspGWI ACGGA 2 cut(s) 549, 703
TspRI CASTG 2 cut(s) 346, 1180
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 5 cut(s) 378, 557, 757, 1499, 1601
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 1 cut(s) 1371
XhoI CTCGAG 1 cut(s) 1341
XmiI GTMKAC 1 cut(s) 530
XspI CTAG 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.