Rh3BG080800

PAPA-1-like conserved region

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
6271566 .. 6275278
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG080800.1

Sequence Viewer

Length: 1629 bp
ATGGAGGGTTTTGGCGGCTTGGGATTCAGTGAAGTAAACAGTGCTGCAAGGAGGAAAAGGAGCAATACATCCCGTCGTCCTCGGAATGAGTCACAGCTTCCTTTGGATTATCGTGACATCTCTTCGCTGTCATCAACTCCTCCTTCAGACGATAATATGATTAAATCTGAGGGAGGAGGATACGTTGAATCTGATGAAGCTTCAAATAATGGTTCTTTTCGAGGCAGTAATGAGCATAGGCATACTGGGATTGATTCCAAAAGGTCGAGCATGGGTGTCCTTGGCCCTGCTAATAGGAAAGGCCCCAGCAAGGATGGGCCTTTTGGTATTGTTTCAGATAATTTAGAGAATAAGAGTACTGTGAAAAAGGTTAAGCTTAAGGTTGGTGGTGTTACACGCACAATTCAGGCCAAGTCCACATCTGATGGTGCATCTAATGTCGGGTTGTCCTCTACAAAATCTTCTCATATTTCAGATGCCCCTCGACCACGGAAGAGGTTGATTCTTCAGGAAAATTCAGATGACAATGGTTCCTTTGGTTCAGACAAGGGAAGTGGGTTACGAGGGGTTGCATCTAAGGATCCATCTAAAAGTGTCTTTGATCTTGGGAAGGATGATAGTTCAAGGGGTAGGATGCCTGAAGAACCTATTCGCAAGAGCAAACGCATCCCTAAGAGACGTGTGCTGGATGGAACAGTTGATGTTGGCGATGATGATGATGATGTGGAAGTTCGATACCTTGAAAAACTCAAAACATCAAAGAATACCCCAGATTGCAGTTTGGACTACCAAGAGGATGAGGAAAGAGCAGTCAGGAAAGAAAGGAAGATTTCAAGGGTGTTGAAGGGAAGTGGTGTTGGCCAGTACAGTGTAGATATGGTAGATTATGGCATATCAAGGTCAGGCAAGGAGGGTAAGAAGTCAAGATCGGGAAGAGTAGTTGATGATACTGATTATGTAGAAGAAGACGAACCTGTTTCTGATGGCGAGCCAGAACTCAAGATCAGGAAGAAGTCAAGAAAGGAGTTTGTTGAGTCATCCTCAGATAATAAGGAGATGACAGTAACTACTCGTCGAAGGGCCCTTCAAACTAGCAAAGATGTCTCTTCCAGCATAGGTGCAAGCGTAATTGAGTTTCCCAATGGGTTGCCTCCTGCGCCGCCAAGAAAGCAAAAAGATGAATTCTGTGCAGTGGAGCAGCAACTGAAGAAAGTTGAGGCTGCTCAGAGACGTAGGATGCAAGTAGAGAAGGCAGCTAGAGAATCTGAGGCTGAGGCAATCAGAAAAATTTTGGGCCAAGATTCCAGTCGGAAGAAAAAGGAAGACAAGATAAAGAAACGGCAAGAAGATCTGGCACAGGAAAGAGCTGCAAATTCTATGCTTCCATCAGATTCTGTTCGATGGGTGATGGGTCCATCAGGATCGATTGTTACTTTTCCTGATACAATTGGTTTACCAACCATATTTGACACCAAGCCTTGCAGTTACCCTCCTCCCCGTGAGAAGTGCGCCGGACCATATTGTACAAACCCATACAAGTACAGGGATTCCCAATCAAAGCTCCCTCTCTGCAGTCTTCAGTGCTACAAGGCGGTTCACGAAAAGATGCCTTCTCTATCTGCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

542

Amino Acids

59.75

Weight (kDa)

9.29

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPA-1 PF04795 399 - 482 9.3e-22 PAPA-1-like conserved region
zf-HIT PF04438 499 - 530 4.4e-07 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 15, 1160, 1592
AclWI GGATC 3 cut(s) 575, 588, 1429
AcoI YGGCCR 1 cut(s) 859
AcsI RAATTY 4 cut(s) 514, 1181, 1287, 1372
AcuI CTGAAG 5 cut(s) 129, 491, 660, 1226, 1562
AfaI GTAC 4 cut(s) 358, 866, 1525, 1541
AfiI CCNNNNNNNGG 1 cut(s) 310
AflII CTTAAG 1 cut(s) 377
AflIII ACRYGT 1 cut(s) 679
AgsI TTSAA 7 cut(s) 188, 204, 624, 743, 834, 844, 1088
AjiI CACGTC 1 cut(s) 680
AluBI AGCT 6 cut(s) 97, 200, 376, 1256, 1367, 1561
AluI AGCT 6 cut(s) 97, 200, 376, 1256, 1367, 1561
Alw26I GTCTC 3 cut(s) 670, 1108, 1222
AlwI GGATC 3 cut(s) 575, 588, 1429
AlwNI CAGNNNCTG 2 cut(s) 1204, 1394
AoxI GGCC 7 cut(s) 283, 301, 317, 408, 859, 1080, 1294
ApaI GGGCCC 1 cut(s) 1084
ApeKI GCWGC 5 cut(s) 44, 1198, 1220, 1253, 1367
ApoI RAATTY 4 cut(s) 514, 1181, 1287, 1372
Asp700I GAANNNNTTC 1 cut(s) 648
AspLEI GCGC 2 cut(s) 1159, 1511
AspS9I GGNCC 8 cut(s) 284, 302, 317, 1080, 1081, 1294, 1412, 1514
AsuHPI GGTGA 1 cut(s) 1417
AvaII GGWCC 2 cut(s) 1412, 1514
BaeGI GKGCMC 1 cut(s) 1084
BalI TGGCCA 1 cut(s) 861
BamHI GGATCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 1084
BbsI GAAGAC 3 cut(s) 972, 1329, 1568
BbvCI CCTCAGC 1 cut(s) 1272
BbvI GCAGC 5 cut(s) 31, 1207, 1210, 1265, 1354
BccI CCATC 9 cut(s) 308, 419, 592, 683, 977, 1393, 1395, 1402, 1423
BceAI ACGGC 1 cut(s) 1355
BciVI GTATCC 1 cut(s) 173
BcoDI GTCTC 3 cut(s) 670, 1108, 1222
BfaI CTAG 2 cut(s) 1092, 1257
BfmI CTRYAG 1 cut(s) 1570
BfrI CTTAAG 1 cut(s) 377
BfuI GTATCC 1 cut(s) 173
BglII AGATCT 1 cut(s) 1348
BisI GCNGC 7 cut(s) 16, 45, 1160, 1199, 1221, 1254, 1368
BlsI GCNGC 7 cut(s) 17, 46, 1161, 1200, 1222, 1255, 1369
BmcAI AGTACT 1 cut(s) 358
Bme18I GGWCC 2 cut(s) 1412, 1514
BmgBI CACGTC 1 cut(s) 680
BmgT120I GGNCC 8 cut(s) 284, 302, 317, 1080, 1081, 1294, 1412, 1514
BmiI GGNNCC 5 cut(s) 304, 532, 582, 1082, 1413
BmrI ACTGGG 1 cut(s) 255
BmsI GCATC 7 cut(s) 440, 466, 581, 624, 675, 1227, 1596
BmuI ACTGGG 1 cut(s) 255
BpiI GAAGAC 3 cut(s) 972, 1329, 1568
BplI GAGNNNNNCTC 2 cut(s) 1025, 1057
Bpu10I CCTNAGC 1 cut(s) 1272
BpuEI CTTGAG 1 cut(s) 983
Bsa29I ATCGAT 1 cut(s) 1424
BsaJI CCNNGG 3 cut(s) 80, 280, 488
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 3 cut(s) 250, 862, 1305
BseCI ATCGAT 1 cut(s) 1424
BseDI CCNNGG 3 cut(s) 80, 280, 488
BseGI GGATG 9 cut(s) 68, 319, 619, 639, 666, 694, 802, 1037, 1242
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 5 cut(s) 159, 1056, 1238, 1257, 1263
BseNI ACTGG 3 cut(s) 250, 862, 1305
BseRI GAGGAG 3 cut(s) 129, 189, 1482
BseSI GKGCMC 1 cut(s) 1084
BseXI GCAGC 5 cut(s) 31, 1207, 1210, 1265, 1354
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 1209
BshFI GGCC 7 cut(s) 285, 303, 319, 410, 861, 1082, 1296
BshVI ATCGAT 1 cut(s) 1424
BsiSI CCGG 1 cut(s) 1512
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 3 cut(s) 670, 1108, 1222
BsmBI CGTCTC 2 cut(s) 670, 1222
BsnI GGCC 7 cut(s) 285, 303, 319, 410, 861, 1082, 1296
Bsp120I GGGCCC 1 cut(s) 1080
Bsp1286I GDGCHC 1 cut(s) 1084
Bsp1407I TGTACA 1 cut(s) 1523
Bsp143I GATC 6 cut(s) 580, 601, 926, 1002, 1348, 1421
BspACI CCGC 3 cut(s) 15, 1160, 1592
BspANI GGCC 7 cut(s) 285, 303, 319, 410, 861, 1082, 1296
BspCNI CTCAG 5 cut(s) 160, 1055, 1237, 1258, 1264
BspDI ATCGAT 1 cut(s) 1424
BspLI GGNNCC 5 cut(s) 304, 532, 582, 1082, 1413
BspMAI CTGCAG 1 cut(s) 1574
BspPI GGATC 3 cut(s) 575, 588, 1429
BspTI CTTAAG 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 1523
BsrI ACTGG 3 cut(s) 250, 862, 1305
BssECI CCNNGG 3 cut(s) 80, 280, 488
BssMI GATC 6 cut(s) 580, 601, 926, 1002, 1348, 1421
BssT1I CCWWGG 1 cut(s) 280
Bst4CI ACNGT 5 cut(s) 41, 361, 697, 869, 1063
Bst6I CTCTTC 4 cut(s) 127, 488, 928, 1111
BstAFI CTTAAG 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 1523
BstC8I GCNNGC 2 cut(s) 989, 1123
BstDEI CTNAG 7 cut(s) 168, 576, 672, 1042, 1224, 1266, 1272
BstDSI CCRYGG 1 cut(s) 488
BstF5I GGATG 9 cut(s) 68, 319, 619, 639, 666, 694, 802, 1037, 1242
BstHHI GCGC 2 cut(s) 1159, 1511
BstKTI GATC 6 cut(s) 583, 604, 929, 1005, 1351, 1424
BstMAI GTCTC 3 cut(s) 670, 1108, 1222
BstMBI GATC 6 cut(s) 580, 601, 926, 1002, 1348, 1421
BstMWI GCNNNNNNNGC 2 cut(s) 1156, 1168
BstSFI CTRYAG 1 cut(s) 1570
BstSLI GKGCMC 1 cut(s) 1084
BstV1I GCAGC 5 cut(s) 31, 1207, 1210, 1265, 1354
BstV2I GAAGAC 3 cut(s) 972, 1329, 1568
BstX2I RGATCY 2 cut(s) 580, 1348
BstYI RGATCY 2 cut(s) 580, 1348
Bsu15I ATCGAT 1 cut(s) 1424
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 7 cut(s) 285, 303, 319, 410, 861, 1082, 1296
BsuTUI ATCGAT 1 cut(s) 1424
BtgI CCRYGG 1 cut(s) 488
BtgZI GCGATG 1 cut(s) 723
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 9 cut(s) 68, 319, 619, 639, 666, 694, 802, 1037, 1242
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 5 cut(s) 34, 46, 874, 1197, 1586
Cac8I GCNNGC 2 cut(s) 989, 1123
CaiI CAGNNNCTG 2 cut(s) 1204, 1394
CfoI GCGC 2 cut(s) 1159, 1511
Cfr13I GGNCC 8 cut(s) 284, 302, 317, 1080, 1081, 1294, 1412, 1514
ClaI ATCGAT 1 cut(s) 1424
Csp6I GTAC 4 cut(s) 357, 865, 1524, 1540
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 1 cut(s) 271
CviQI GTAC 4 cut(s) 357, 865, 1524, 1540
DdeI CTNAG 7 cut(s) 168, 576, 672, 1042, 1224, 1266, 1272
DpnI GATC 6 cut(s) 582, 603, 928, 1004, 1350, 1423
DpnII GATC 6 cut(s) 580, 601, 926, 1002, 1348, 1421
EaeI YGGCCR 1 cut(s) 859
Eam1104I CTCTTC 4 cut(s) 127, 488, 928, 1111
EarI CTCTTC 4 cut(s) 127, 488, 928, 1111
Eco130I CCWWGG 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 1084
Eco47I GGWCC 2 cut(s) 1412, 1514
Eco57I CTGAAG 5 cut(s) 129, 491, 660, 1226, 1562
EcoO109I RGGNCCY 3 cut(s) 302, 1080, 1081
EcoRI GAATTC 1 cut(s) 1181
EcoT14I CCWWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 1084
ErhI CCWWGG 1 cut(s) 280
Esp3I CGTCTC 2 cut(s) 670, 1222
FaeI CATG 1 cut(s) 274
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 7 cut(s) 16, 45, 1160, 1199, 1221, 1254, 1368
FokI GGATG 9 cut(s) 55, 326, 626, 646, 653, 701, 809, 1024, 1249
FriOI GRGCYC 1 cut(s) 1084
Fsp4HI GCNGC 7 cut(s) 16, 45, 1160, 1199, 1221, 1254, 1368
FspBI CTAG 2 cut(s) 1092, 1257
GlaI GCGC 2 cut(s) 1158, 1510
GluI GCNGC 7 cut(s) 16, 45, 1160, 1199, 1221, 1254, 1368
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 7 cut(s) 285, 303, 319, 410, 861, 1082, 1296
HapII CCGG 1 cut(s) 1512
HhaI GCGC 2 cut(s) 1159, 1511
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 2 cut(s) 1157, 1509
HinP1I GCGC 2 cut(s) 1157, 1509
HindIII AAGCTT 2 cut(s) 198, 374
HpaII CCGG 1 cut(s) 1512
HphI GGTGA 1 cut(s) 1417
Hpy166II GTNNAC 4 cut(s) 37, 417, 1454, 1597
Hpy8I GTNNAC 4 cut(s) 37, 417, 1454, 1597
Hpy99I CGWCG 2 cut(s) 78, 1077
HpyAV CCTTC 7 cut(s) 153, 604, 838, 1071, 1094, 1243, 1620
HpyCH4III ACNGT 5 cut(s) 41, 361, 697, 869, 1063
HpyCH4IV ACGT 3 cut(s) 183, 679, 1231
HpyF10VI GCNNNNNNNGC 2 cut(s) 1156, 1168
HpyF3I CTNAG 7 cut(s) 168, 576, 672, 1042, 1224, 1266, 1272
HpySE526I ACGT 3 cut(s) 183, 679, 1231
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 2 cut(s) 1157, 1509
Kzo9I GATC 6 cut(s) 580, 601, 926, 1002, 1348, 1421
LmnI GCTCC 3 cut(s) 60, 1195, 1566
Lsp1109I GCAGC 5 cut(s) 31, 1207, 1210, 1265, 1354
LweI GCATC 7 cut(s) 440, 466, 581, 624, 675, 1227, 1596
MaeI CTAG 2 cut(s) 1092, 1257
MaeII ACGT 3 cut(s) 183, 679, 1231
MaeIII GTNAC 7 cut(s) 90, 113, 391, 558, 1063, 1429, 1484
MalI GATC 6 cut(s) 582, 603, 928, 1004, 1350, 1423
MboI GATC 6 cut(s) 580, 601, 926, 1002, 1348, 1421
MfeI CAATTG 1 cut(s) 1446
MflI RGATCY 2 cut(s) 580, 1348
MhlI GDGCHC 1 cut(s) 1084
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 8 cut(s) 340, 402, 514, 1128, 1181, 1287, 1372, 1446
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 2 cut(s) 98, 1043
MmeI TCCRAC 1 cut(s) 1289
Mox20I TGGCCA 1 cut(s) 861
MroXI GAANNNNTTC 1 cut(s) 648
MscI TGGCCA 1 cut(s) 861
MseI TTAA 4 cut(s) 162, 372, 378, 1627
Msp20I TGGCCA 1 cut(s) 861
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 1 cut(s) 1512
MunI CAATTG 1 cut(s) 1446
MwoI GCNNNNNNNGC 2 cut(s) 1156, 1168
NdeII GATC 6 cut(s) 580, 601, 926, 1002, 1348, 1421
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 5 cut(s) 304, 532, 582, 1082, 1413
NmuCI GTSAC 2 cut(s) 90, 113
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 8 cut(s) 24, 188, 254, 502, 1262, 1301, 1391, 1547
PkrI GCNGC 7 cut(s) 17, 46, 1161, 1200, 1222, 1255, 1369
PleI GAGTC 2 cut(s) 97, 1042
PpsI GAGTC 2 cut(s) 97, 1042
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 5 cut(s) 304, 532, 582, 1082, 1413
PspOMI GGGCCC 1 cut(s) 1080
PspPI GGNCC 8 cut(s) 284, 302, 317, 1080, 1081, 1294, 1412, 1514
PstI CTGCAG 1 cut(s) 1574
PstNI CAGNNNCTG 2 cut(s) 1204, 1394
PsuI RGATCY 2 cut(s) 580, 1348
RsaI GTAC 4 cut(s) 358, 866, 1525, 1541
RsaNI GTAC 4 cut(s) 357, 865, 1524, 1540
SaqAI TTAA 4 cut(s) 162, 372, 378, 1627
SatI GCNGC 7 cut(s) 16, 45, 1160, 1199, 1221, 1254, 1368
Sau3AI GATC 6 cut(s) 580, 601, 926, 1002, 1348, 1421
Sau96I GGNCC 8 cut(s) 284, 302, 317, 1080, 1081, 1294, 1412, 1514
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 2 cut(s) 98, 1043
SduI GDGCHC 1 cut(s) 1084
SfaNI GCATC 7 cut(s) 440, 466, 581, 624, 675, 1227, 1596
SfcI CTRYAG 1 cut(s) 1570
SinI GGWCC 2 cut(s) 1412, 1514
SmlI CTYRAG 2 cut(s) 377, 998
SmoI CTYRAG 2 cut(s) 377, 998
Sse9I AATT 8 cut(s) 340, 402, 514, 1128, 1181, 1287, 1372, 1446
SsiI CCGC 3 cut(s) 15, 1160, 1592
SspMI CTAG 2 cut(s) 1092, 1257
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 5 cut(s) 41, 361, 697, 869, 1063
TaiI ACGT 3 cut(s) 186, 682, 1234
TaqI TCGA 7 cut(s) 220, 266, 484, 733, 1075, 1399, 1424
TasI AATT 8 cut(s) 340, 402, 514, 1128, 1181, 1287, 1372, 1446
TatI WGTACW 4 cut(s) 356, 864, 1523, 1539
TauI GCSGC 2 cut(s) 18, 1162
TfiI GAWTC 8 cut(s) 24, 188, 254, 502, 1262, 1301, 1391, 1547
Tru1I TTAA 4 cut(s) 162, 372, 378, 1627
Tru9I TTAA 4 cut(s) 162, 372, 378, 1627
TscAI CASTG 5 cut(s) 34, 46, 874, 1197, 1586
TseFI GTSAC 2 cut(s) 90, 113
TseI GCWGC 5 cut(s) 44, 1198, 1220, 1253, 1367
Tsp45I GTSAC 2 cut(s) 90, 113
TspDTI ATGAA 2 cut(s) 210, 1194
TspGWI ACGGA 1 cut(s) 505
TspRI CASTG 5 cut(s) 34, 46, 874, 1197, 1586
Vha464I CTTAAG 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 1412, 1514
XapI RAATTY 4 cut(s) 514, 1181, 1287, 1372
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 2 cut(s) 1092, 1257
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.