Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005975

Physical Location & Seq

Genomic Coordinates Reverse (-)

4486824 .. 4490511

Gene Structure 3688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07480.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGAGAGTTTTGGCGGCTTGGGATTCAGTGATATAAGCAGTGCCGCAAGGAGGAAAAGGAGCAATACGTCTCGTCGTCCTCGGAATGAGGCACAGCTTCTGGATTATCGTGACATCTCTTCTCTCTCGTCAACGCCTCCTTCAGACGATAATGTTACTAAAACTGAGGGAGGAGGGTATGTAGAATCTGATGAAGCTTCGAATAATGGTTCTTTTCGAGGCAGTAATGAGCATAGGCATACTGGGATTGATTCCAAAAGGTCCAGCAAGGGTGGCCTTGGCTCTGCTAATAGGAGAGGCCCAAGTAAGGATGGGTCATTCGGTATTGGTTCAGATGTTTTGGAGAATAAGAGTACTGTGAAAAAGGTTAAGCTTAAGGTTGGTGGTGTTACACGCACAATTCAGGCCAAGTCTACATCTGATGGTGCATCTAATGTTGGGTTGACTTCTTCAAAATCTTCTCATATTTCTGATGCCCCTCGACCACGGAAGAGGTCGATTATTCAGGAAAATTCAGATGAAAATGGCTCCTTTGGTTCAGATAAGGGAAGTGGGTTACGAGGGGTTGCATCTAAGGATCCATCTAAAGGTGTCTTTGATGTTGGGAAGGATAATACTTCAAGGGGTAGGATACCTGAAGAACCTATTCGCAAAAGCAAACGGGTTCCTAAGAGACGTTTGCTGGATGGAACAGTTGATGTTGGAGATGATGACGATGATGTGGAAGTTCGATACCTTGAAAAACTCAAAAAATCTAAGAATACCCCAGATTACAGTTTGGACTACCAAGAGGATGAGGAAAGAGCAGTCAGGAAAGAAAAGAGAATTTCAAAGGTGTTGAATGGAAGTGGTGCTGGCCAGTACGGTGTAGATTTGGTAGATGGCATTTCAAAGTCAGACAAGGAGGGTAAGAAGTCAAGATCAGGAAGAGTAGTTGATGACACTGATTATGTAGAAGAAGAAGAAGATGAACCTGTTTCTGATGGCGAGCCAGAACTCAAGATCAGGAAAAACTCGAGAAAGGAGTTTGCTGACTCTTCCTCAGATAATAAGGAGATGACAGTCACTACTCGTCGAAGGGCCCTTCAAACTAACAAAGATGTATCTTCCAGCATAGGTCCAAGTACAATTGAGTTTCCCAACGGGTTGCCCCCTGCACCACCAAGAAAGCAAAAAGAGGAACTCTGTGCGGTGGAACAGCAACTGAAGAAAGCTGAGGCTGCTCAGAGACGAAAGATGCAAGTGGAGAAGGCAGCCAGAGAATCGGAGGCTGAGGCAATCAGAAAAATTTTGGGTCAAGATTCCAGTCGGAAGAAGAAGGAAGACAAGATAAAGAAACGGCAAGAAGATATGGCACAGGAGAGAGCTGCAAATGCTATGCTTCCATCAGATTCTGTTCGATGGGTGATGGGTCCATCAGGATCAATTGTTACTTTTCCTGATACAGTTGGCTTACCAACCATATTTGATTCCAAGCCTTGCAGTTACCCTCCTCCCCGTGAGAAGTGTGCCGGACCATATTGTACAAACCCATACAAGTACAGGGATTCCCAATCAAAGCTCCCTCTGTGCAGTCTCCAGTGTTACAAGGCAGTTCATGAAAAGATGCCTTCTCTATCCGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAPA-1 zf-HIT

Protein Analysis

543

Amino Acids

59.44

Weight (kDa)

9.22

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAPA-1	PF04795	399 - 482	2.7e-22	PAPA-1-like conserved region
zf-HIT	PF04438	499 - 530	4.4e-07	HIT zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56460 AT1G56460 AT1G56460
fragaria_vesca	FvH4_6g07480 FvH4_6g07480 FvH4_6g07480 FvH4_6g07480
malus_domestica	MD00G1208200.v1.1 MD04G1214800.v1.1 MD04G1215000.v1.1 MD12G1205400.v1.1
prunus_persica	Prupe.6G312500_v2.0.a1
pyrus_communis	pycom12g19330
rosa_chinensis	RchiOBHm_Chr3g0457151 RchiOBHm_Chr3g0457181
rosa_laevigata	RLG00000025244
rosa_multiflora	Rmu_sc0000488.1_g000012
rosa_roxburghii	Rroxscaffold_6G00422130
rosa_rugosa	Rorug03G0019200 Rorug03G0019300 Rorug03G0019300 Rorug03G0019400
rosa_samantha	Rh3AG079100 Rh3BG080800 Rh3CG080900 Rh3DG082800
rosa_wichuraiana	Rw3G006800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	413
AciI	CCGC	4 cut(s)	15, 45, 1190, 1620
AclWI	GGATC	3 cut(s)	572, 585, 1429
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	3 cut(s)	511, 825, 1287
AcuI	CTGAAG	3 cut(s)	126, 657, 1226
AfaI	GTAC	5 cut(s)	355, 863, 1126, 1525, 1541
AfiI	CCNNNNNNNGG	3 cut(s)	51, 307, 587
AflII	CTTAAG	1 cut(s)	374
AgsI	TTSAA	7 cut(s)	453, 621, 740, 831, 841, 891, 1088
AluBI	AGCT	6 cut(s)	97, 197, 373, 1214, 1367, 1561
AluI	AGCT	6 cut(s)	97, 197, 373, 1214, 1367, 1561
Alw26I	GTCTC	4 cut(s)	75, 667, 1222, 1580
AlwI	GGATC	3 cut(s)	572, 585, 1429
AlwNI	CAGNNNCTG	3 cut(s)	100, 1204, 1394
Ama87I	CYCGRG	1 cut(s)	1015
AoxI	GGCC	5 cut(s)	274, 298, 405, 856, 1080
ApaI	GGGCCC	1 cut(s)	1084
ApeKI	GCWGC	3 cut(s)	1220, 1253, 1367
ApoI	RAATTY	3 cut(s)	511, 825, 1287
Asp700I	GAANNNNTTC	1 cut(s)	645
AspS9I	GGNCC	7 cut(s)	261, 299, 1080, 1081, 1118, 1412, 1514
AsuHPI	GGTGA	1 cut(s)	1417
AsuII	TTCGAA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	1015
AvaII	GGWCC	4 cut(s)	261, 1118, 1412, 1514
BaeGI	GKGCMC	1 cut(s)	1084
BalI	TGGCCA	1 cut(s)	858
BamHI	GGATCC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	1084
BbsI	GAAGAC	1 cut(s)	1329
BbvCI	CCTCAGC	2 cut(s)	1215, 1272
BbvI	GCAGC	3 cut(s)	1207, 1265, 1354
BceAI	ACGGC	1 cut(s)	1355
BciVI	GTATCC	1 cut(s)	624
BcoDI	GTCTC	4 cut(s)	75, 667, 1222, 1580
BfrI	CTTAAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	624
BisI	GCNGC	5 cut(s)	16, 45, 1221, 1254, 1368
BlsI	GCNGC	5 cut(s)	17, 46, 1222, 1255, 1369
BmcAI	AGTACT	1 cut(s)	355
Bme18I	GGWCC	4 cut(s)	261, 1118, 1412, 1514
BmeT110I	CYCGRG	1 cut(s)	1015
BmgT120I	GGNCC	7 cut(s)	261, 299, 1080, 1081, 1118, 1412, 1514
BmiI	GGNNCC	5 cut(s)	529, 579, 666, 1082, 1413
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	5 cut(s)	437, 463, 578, 1227, 1596
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	1329
BpmI	CTGGAG	1 cut(s)	1562
Bpu10I	CCTNAGC	2 cut(s)	1215, 1272
Bpu14I	TTCGAA	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	983
BsaJI	CCNNGG	3 cut(s)	80, 277, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 307, 587
Bse1I	ACTGG	4 cut(s)	247, 859, 1305, 1579
BseDI	CCNNGG	3 cut(s)	80, 277, 485
BseGI	GGATG	3 cut(s)	316, 691, 799
BseLI	CCNNNNNNNGG	3 cut(s)	51, 307, 587
BseMII	CTCAG	5 cut(s)	156, 1056, 1206, 1238, 1263
BseNI	ACTGG	4 cut(s)	247, 859, 1305, 1579
BseRI	GAGGAG	2 cut(s)	186, 1482
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	3 cut(s)	1207, 1265, 1354
BsgI	GTGCAG	2 cut(s)	1140, 1591
BshFI	GGCC	5 cut(s)	276, 300, 407, 858, 1082
BsiHKCI	CYCGRG	1 cut(s)	1015
BsiSI	CCGG	1 cut(s)	1512
BslI	CCNNNNNNNGG	3 cut(s)	51, 307, 587
BsmAI	GTCTC	4 cut(s)	75, 667, 1222, 1580
BsmBI	CGTCTC	3 cut(s)	75, 667, 1222
BsnI	GGCC	5 cut(s)	276, 300, 407, 858, 1082
BsoBI	CYCGRG	1 cut(s)	1015
Bsp119I	TTCGAA	1 cut(s)	200
Bsp120I	GGGCCC	1 cut(s)	1080
Bsp1286I	GDGCHC	1 cut(s)	1084
Bsp1407I	TGTACA	1 cut(s)	1523
Bsp143I	GATC	4 cut(s)	577, 920, 1002, 1421
BspACI	CCGC	4 cut(s)	15, 45, 1190, 1620
BspANI	GGCC	5 cut(s)	276, 300, 407, 858, 1082
BspCNI	CTCAG	5 cut(s)	157, 1055, 1207, 1237, 1264
BspHI	TCATGA	1 cut(s)	1597
BspLI	GGNNCC	5 cut(s)	529, 579, 666, 1082, 1413
BspPI	GGATC	3 cut(s)	572, 585, 1429
BspT104I	TTCGAA	1 cut(s)	200
BspTI	CTTAAG	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	1523
BsrI	ACTGG	4 cut(s)	247, 859, 1305, 1579
BssECI	CCNNGG	3 cut(s)	80, 277, 485
BssMI	GATC	4 cut(s)	577, 920, 1002, 1421
BssT1I	CCWWGG	1 cut(s)	277
Bst4CI	ACNGT	6 cut(s)	358, 694, 776, 866, 1063, 1447
Bst6I	CTCTTC	4 cut(s)	124, 485, 922, 1042
BstAFI	CTTAAG	1 cut(s)	374
BstAUI	TGTACA	1 cut(s)	1523
BstBI	TTCGAA	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	856, 989
BstDEI	CTNAG	8 cut(s)	165, 573, 669, 756, 1042, 1215, 1224, 1272
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	316, 691, 799
BstKTI	GATC	4 cut(s)	580, 923, 1005, 1424
BstMAI	GTCTC	4 cut(s)	75, 667, 1222, 1580
BstMBI	GATC	4 cut(s)	577, 920, 1002, 1421
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 1220, 1373
BstNSI	RCATGY	1 cut(s)	1626
BstSLI	GKGCMC	1 cut(s)	1084
BstV1I	GCAGC	3 cut(s)	1207, 1265, 1354
BstV2I	GAAGAC	1 cut(s)	1329
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	624
BsuRI	GGCC	5 cut(s)	276, 300, 407, 858, 1082
BtgI	CCRYGG	1 cut(s)	485
BtsCI	GGATG	3 cut(s)	316, 691, 799
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	4 cut(s)	34, 46, 942, 1586
Cac8I	GCNNGC	2 cut(s)	856, 989
CaiI	CAGNNNCTG	3 cut(s)	100, 1204, 1394
CciI	TCATGA	1 cut(s)	1597
Cfr13I	GGNCC	7 cut(s)	261, 299, 1080, 1081, 1118, 1412, 1514
Csp6I	GTAC	5 cut(s)	354, 862, 1125, 1524, 1540
CviAII	CATG	2 cut(s)	1598, 1623
CviQI	GTAC	5 cut(s)	354, 862, 1125, 1524, 1540
DdeI	CTNAG	8 cut(s)	165, 573, 669, 756, 1042, 1215, 1224, 1272
DpnI	GATC	4 cut(s)	579, 922, 1004, 1423
DpnII	GATC	4 cut(s)	577, 920, 1002, 1421
EaeI	YGGCCR	1 cut(s)	856
Eam1104I	CTCTTC	4 cut(s)	124, 485, 922, 1042
EarI	CTCTTC	4 cut(s)	124, 485, 922, 1042
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	1084
Eco47I	GGWCC	4 cut(s)	261, 1118, 1412, 1514
Eco57I	CTGAAG	3 cut(s)	126, 657, 1226
Eco88I	CYCGRG	1 cut(s)	1015
EcoO109I	RGGNCCY	2 cut(s)	1080, 1081
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	1084
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	3 cut(s)	75, 667, 1222
FaeI	CATG	2 cut(s)	1601, 1626
FatI	CATG	2 cut(s)	1597, 1622
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	5 cut(s)	16, 45, 1221, 1254, 1368
FokI	GGATG	3 cut(s)	323, 698, 806
FriOI	GRGCYC	1 cut(s)	1084
Fsp4HI	GCNGC	5 cut(s)	16, 45, 1221, 1254, 1368
GluI	GCNGC	5 cut(s)	16, 45, 1221, 1254, 1368
GsuI	CTGGAG	1 cut(s)	1562
HaeIII	GGCC	5 cut(s)	276, 300, 407, 858, 1082
HapII	CCGG	1 cut(s)	1512
Hin1II	CATG	2 cut(s)	1601, 1626
HincII	GTYRAC	2 cut(s)	132, 444
HindII	GTYRAC	2 cut(s)	132, 444
HindIII	AAGCTT	2 cut(s)	195, 371
HinfI	GANTC	9 cut(s)	24, 185, 251, 1034, 1262, 1301, 1391, 1469, 1547
HpaII	CCGG	1 cut(s)	1512
HphI	GGTGA	1 cut(s)	1417
Hpy166II	GTNNAC	3 cut(s)	132, 414, 444
Hpy8I	GTNNAC	3 cut(s)	132, 414, 444
Hpy99I	CGWCG	2 cut(s)	78, 1077
HpyAV	CCTTC	7 cut(s)	150, 601, 1071, 1094, 1243, 1312, 1620
HpyCH4III	ACNGT	6 cut(s)	358, 694, 776, 866, 1063, 1447
HpyCH4IV	ACGT	2 cut(s)	68, 676
HpyCH4V	TGCA	7 cut(s)	428, 569, 1157, 1240, 1370, 1482, 1572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 1220, 1373
HpyF3I	CTNAG	8 cut(s)	165, 573, 669, 756, 1042, 1215, 1224, 1272
HpySE526I	ACGT	2 cut(s)	68, 676
Hsp92II	CATG	2 cut(s)	1601, 1626
Kzo9I	GATC	4 cut(s)	577, 920, 1002, 1421
LmnI	GCTCC	3 cut(s)	60, 533, 1566
Lsp1109I	GCAGC	3 cut(s)	1207, 1265, 1354
LweI	GCATC	5 cut(s)	437, 463, 578, 1227, 1596
MaeII	ACGT	2 cut(s)	68, 676
MaeIII	GTNAC	8 cut(s)	110, 154, 388, 555, 1063, 1429, 1484, 1583
MalI	GATC	4 cut(s)	579, 922, 1004, 1423
MboI	GATC	4 cut(s)	577, 920, 1002, 1421
MfeI	CAATTG	2 cut(s)	1128, 1425
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	1084
MlsI	TGGCCA	1 cut(s)	858
MluCI	AATT	6 cut(s)	399, 511, 825, 1128, 1287, 1425
MluNI	TGGCCA	1 cut(s)	858
MlyI	GAGTC	1 cut(s)	1028
MmeI	TCCRAC	2 cut(s)	682, 1289
Mox20I	TGGCCA	1 cut(s)	858
MroXI	GAANNNNTTC	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	858
MseI	TTAA	3 cut(s)	369, 375, 1627
Msp20I	TGGCCA	1 cut(s)	858
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	1512
MunI	CAATTG	2 cut(s)	1128, 1425
MwoI	GCNNNNNNNGC	3 cut(s)	273, 1220, 1373
NdeII	GATC	4 cut(s)	577, 920, 1002, 1421
NlaIII	CATG	2 cut(s)	1601, 1626
NlaIV	GGNNCC	5 cut(s)	529, 579, 666, 1082, 1413
NmuCI	GTSAC	2 cut(s)	110, 1063
NspI	RCATGY	1 cut(s)	1626
NspV	TTCGAA	1 cut(s)	200
PaeR7I	CTCGAG	1 cut(s)	1015
PagI	TCATGA	1 cut(s)	1597
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	8 cut(s)	24, 185, 251, 1262, 1301, 1391, 1469, 1547
PkrI	GCNGC	5 cut(s)	17, 46, 1222, 1255, 1369
PleI	GAGTC	1 cut(s)	1028
PpsI	GAGTC	1 cut(s)	1028
PspN4I	GGNNCC	5 cut(s)	529, 579, 666, 1082, 1413
PspOMI	GGGCCC	1 cut(s)	1080
PspPI	GGNCC	7 cut(s)	261, 299, 1080, 1081, 1118, 1412, 1514
PstNI	CAGNNNCTG	3 cut(s)	100, 1204, 1394
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	5 cut(s)	355, 863, 1126, 1525, 1541
RsaNI	GTAC	5 cut(s)	354, 862, 1125, 1524, 1540
SaqAI	TTAA	3 cut(s)	369, 375, 1627
SatI	GCNGC	5 cut(s)	16, 45, 1221, 1254, 1368
Sau3AI	GATC	4 cut(s)	577, 920, 1002, 1421
Sau96I	GGNCC	7 cut(s)	261, 299, 1080, 1081, 1118, 1412, 1514
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	1 cut(s)	1028
SduI	GDGCHC	1 cut(s)	1084
SfaNI	GCATC	5 cut(s)	437, 463, 578, 1227, 1596
Sfr274I	CTCGAG	1 cut(s)	1015
SfuI	TTCGAA	1 cut(s)	200
SinI	GGWCC	4 cut(s)	261, 1118, 1412, 1514
SlaI	CTCGAG	1 cut(s)	1015
SmlI	CTYRAG	3 cut(s)	374, 998, 1015
SmoI	CTYRAG	3 cut(s)	374, 998, 1015
Sse9I	AATT	6 cut(s)	399, 511, 825, 1128, 1287, 1425
SsiI	CCGC	4 cut(s)	15, 45, 1190, 1620
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	6 cut(s)	358, 694, 776, 866, 1063, 1447
TaiI	ACGT	2 cut(s)	71, 679
TaqI	TCGA	8 cut(s)	200, 217, 481, 497, 730, 1016, 1075, 1399
TasI	AATT	6 cut(s)	399, 511, 825, 1128, 1287, 1425
TatI	WGTACW	4 cut(s)	353, 1124, 1523, 1539
TauI	GCSGC	2 cut(s)	18, 47
TfiI	GAWTC	8 cut(s)	24, 185, 251, 1262, 1301, 1391, 1469, 1547
Tru1I	TTAA	3 cut(s)	369, 375, 1627
Tru9I	TTAA	3 cut(s)	369, 375, 1627
TscAI	CASTG	4 cut(s)	34, 46, 949, 1586
TseFI	GTSAC	2 cut(s)	110, 1063
TseI	GCWGC	3 cut(s)	1220, 1253, 1367
Tsp45I	GTSAC	2 cut(s)	110, 1063
TspDTI	ATGAA	5 cut(s)	207, 534, 984, 1586, 1614
TspGWI	ACGGA	1 cut(s)	502
TspRI	CASTG	4 cut(s)	34, 46, 949, 1586
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	4 cut(s)	261, 1118, 1412, 1514
XapI	RAATTY	3 cut(s)	511, 825, 1287
XceI	RCATGY	1 cut(s)	1626
XhoI	CTCGAG	1 cut(s)	1015
XmiI	GTMKAC	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.